Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N02315 Erythranthe guttata HOM05D000008 ORTHO05D000005 1.1e-111 406.8 223 100.0
MSTRG.17591 Avicennia marina HOM05D062635 ORTHO05D000005 7.1e-18 95.1 238 36.6
SGA_v2.0_scaffold3G01505 Striga asiatica HOM05D000008 ORTHO05D000005 2.7e-17 93.2 237 40.1
Nitab4.5_0010133g0010 Nicotiana tabacum HOM05D000008 ORTHO05D000005 7.4e-15 85.1 162 38.9
PGSC0003DMG400007360 Solanum tuberosum HOM05D000008 ORTHO05D000005 2.1e-14 83.6 178 38.8
CAN.G1496.2 Capsicum annuum HOM05D000008 ORTHO05D000005 3.7e-14 82.8 182 37.9
Sopen11g025590 Solanum pennellii HOM05D000008 ORTHO05D000005 4.8e-14 82.4 171 39.2
Dinv43447 Davidia involucrata HOM05D000008 ORTHO05D000005 1.1e-13 81.3 164 37.8
Solyc11g065840.3 Solanum lycopersicum HOM05D000008 ORTHO05D000005 1.1e-13 81.3 168 38.7
Nitab4.5_0005819g0010 Nicotiana tabacum HOM05D000008 ORTHO05D000005 3.1e-13 79.7 163 38.0
RcHm_v2.0_Chr5g0051961 Rosa chinensis HOM05D000008 ORTHO05D000005 3.1e-13 79.7 156 34.6
Peaxi162Scf00004g02328 Petunia axillaris HOM05D000008 ORTHO05D000005 4.0e-13 79.3 241 34.4
FAN11G3139 Fragaria x ananassa HOM05D000008 ORTHO05D000005 5.3e-13 79.0 160 36.9
Cc00_g08050 Coffea canephora HOM05D000008 ORTHO05D000005 1.2e-12 77.8 168 36.3
FvH4_3g28890 Fragaria vesca HOM05D000008 ORTHO05D000005 1.2e-12 77.8 160 36.2
FAN16G1915 Fragaria x ananassa HOM05D000008 ORTHO05D000005 2.0e-12 77.0 160 36.2
FAN16G3271 Fragaria x ananassa HOM05D000008 ORTHO05D000005 2.0e-12 77.0 160 36.2
FAN25G3066 Fragaria x ananassa HOM05D000008 ORTHO05D000005 2.0e-12 77.0 160 35.6
FAN21G2252 Fragaria x ananassa HOM05D000008 ORTHO05D000005 1.0e-11 74.7 158 36.1
Manes.06G164800 Manihot esculenta HOM05D000008 ORTHO05D000005 1.0e-11 74.7 156 38.5
Phvul.004G046000 Phaseolus vulgaris HOM05D000008 ORTHO05D000005 1.0e-11 74.7 169 30.8
TAR633G1043 Trochodendron aralioides HOM05D000008 ORTHO05D000005 1.0e-11 74.7 125 43.2
Prupe.4G247800 Prunus persica HOM05D000008 ORTHO05D000005 1.3e-11 74.3 169 36.1
Dinv36264 Davidia involucrata HOM05D000008 ORTHO05D000005 1.7e-11 73.9 151 37.7
Lalb_Chr03g0034061 Lupinus albus HOM05D000008 ORTHO05D000005 2.2e-11 73.6 158 34.2
MD11G1196500 Malus domestica HOM05D000008 ORTHO05D000005 2.2e-11 73.6 161 39.8
Lj3g0009433 Lotus japonicus HOM05D000008 ORTHO05D000005 3.8e-11 72.8 168 36.3
Manes.14G002400 Manihot esculenta HOM05D000008 ORTHO05D000005 4.9e-11 72.4 152 35.5
Gorai.001G138800 Gossypium raimondii HOM05D000008 ORTHO05D000005 1.1e-10 71.2 146 35.6
Dinv22180 Davidia involucrata HOM05D000008 ORTHO05D000005 1.4e-10 70.9 123 37.4
Dinv09358 Davidia involucrata HOM05D000008 ORTHO05D000005 4.2e-10 69.3 165 33.9
Gohir.A09G114700 Gossypium hirsutum HOM05D000008 ORTHO05D000005 4.2e-10 69.3 149 34.9
Gohir.D07G128400 Gossypium hirsutum HOM05D000008 ORTHO05D000005 7.1e-10 68.6 146 34.9
TAR636G2544 Trochodendron aralioides HOM05D000008 ORTHO05D000005 7.1e-10 68.6 154 33.8
Actinidia06338 Actinidia chinensis HOM05D000008 ORTHO05D000005 9.3e-10 68.2 160 32.5
MD03G1176000 Malus domestica HOM05D000008 ORTHO05D000005 9.3e-10 68.2 175 36.6
CSS0029977 Camellia sinensis var. sinensis HOM05D000008 ORTHO05D000005 1.2e-09 67.8 93 46.2
Haze_03210 Corylus avellana HOM05D000008 ORTHO05D000005 1.6e-09 67.4 92 45.7
Potri.009G053900 Populus trichocarpa HOM05D000008 ORTHO05D000005 2.1e-09 67.0 131 35.1
DCAR_031543 Daucus carota HOM05D000008 ORTHO05D000005 2.7e-09 66.6 85 43.5
Gohir.A07G124100 Gossypium hirsutum HOM05D000008 ORTHO05D000005 2.7e-09 66.6 146 34.2
Thecc.01G411200 Theobroma cacao HOM05D000008 ORTHO05D000005 2.7e-09 66.6 168 33.9
Thecc.09G232900 Theobroma cacao HOM05D000008 ORTHO05D000005 2.7e-09 66.6 127 37.0
Potri.001G267300 Populus trichocarpa HOM05D000008 ORTHO05D000005 3.5e-09 66.2 109 38.5
HPP92_006096 Vanilla planifolia HOM05D000008 ORTHO05D000005 3.5e-09 66.2 117 35.9
GSVIVG01025269001 Vitis vinifera HOM05D000008 ORTHO05D000005 4.6e-09 65.9 129 35.7
Hma1.2p1_1190F.1_g265400 Hydrangea macrophylla HOM05D000008 ORTHO05D000005 6.0e-09 65.5 163 34.4
Actinidia23969 Actinidia chinensis HOM05D000008 ORTHO05D000005 7.9e-09 65.1 126 36.5
Gorai.006G129100 Gossypium raimondii HOM05D000008 ORTHO05D000005 7.9e-09 65.1 83 47.0
Oeu023359.1 Olea europaea HOM05D000008 ORTHO05D000005 1.0e-08 64.7 180 34.4
VMungo0464G0324 Vigna mungo HOM05D000008 ORTHO05D000005 1.3e-08 64.3 162 30.9
Sabra09G0039300 Salix brachista HOM05D000008 ORTHO05D000005 2.3e-08 63.5 180 31.7
Ciclev10033941m.g Citrus clementina HOM05D000008 ORTHO05D000005 3.0e-08 63.2 165 30.9
Eucgr.B03684 Eucalyptus grandis HOM05D000008 ORTHO05D000005 3.0e-08 63.2 95 40.0
Gohir.D09G111400 Gossypium hirsutum HOM05D000008 ORTHO05D000005 3.0e-08 63.2 83 45.8
Rhsim13G0221600 Rhododendron simsii HOM05D000008 ORTHO05D000005 3.0e-08 63.2 123 43.1
Peaxi162Scf00428g00117 Petunia axillaris HOM05D000008 ORTHO05D000005 3.9e-08 62.8 171 31.0
QL04p006651 Quercus lobata HOM05D000008 ORTHO05D000005 3.9e-08 62.8 91 42.9
CiPaw.14G119200 Carya illinoinensis HOM05D000008 ORTHO05D000005 8.7e-08 61.6 123 35.0
Actinidia16331 Actinidia chinensis HOM05D000008 ORTHO05D000005 1.1e-07 61.2 87 46.0
Cfa009767 Carpinus fangiana HOM05D000008 ORTHO05D000005 1.5e-07 60.8 167 31.1
Psat5g207440 Pisum sativum HOM05D000008 ORTHO05D000005 1.5e-07 60.8 131 31.3
TWI34G0800 Tripterygium wilfordii HOM05D000008 ORTHO05D000005 1.5e-07 60.8 83 43.4
Duzib150G0088 Durio zibethinus HOM05D000008 ORTHO05D000005 1.9e-07 60.5 143 35.7
ECA233G3986 Erigeron canadensis HOM05D000008 ORTHO05D000005 1.9e-07 60.5 177 30.5
Glyma.11G133700 Glycine max HOM05D000008 ORTHO05D000005 1.9e-07 60.5 180 31.1
TWI09G1563 Tripterygium wilfordii HOM05D000008 ORTHO05D000005 2.5e-07 60.1 126 39.7
Haze_23133 Corylus avellana HOM05D000008 ORTHO05D000005 3.3e-07 59.7 157 36.3
TAR623G1002 Trochodendron aralioides HOM05D000008 ORTHO05D000005 3.3e-07 59.7 154 38.3
Potri.001G258700 Populus trichocarpa HOM05D000008 ORTHO05D000005 4.3e-07 59.3 171 30.4
Lj3g0012577 Lotus japonicus HOM05D000008 ORTHO05D000005 5.7e-07 58.9 162 33.3
AUR62019295 Chenopodium quinoa HOM05D000008 ORTHO05D000005 7.4e-07 58.5 36 63.9
CANSAT54G1258 Cannabis sativa HOM05D000008 ORTHO05D000005 9.6e-07 58.2 137 35.8
Lsat_1_v5_gn_6_47800 Lactuca sativa HOM05D000008 ORTHO05D000005 9.6e-07 58.2 123 34.1
Gohir.A08G144600 Gossypium hirsutum HOM05D000008 ORTHO05D000005 1.3e-06 57.8 177 31.1
HanXRQChr02g0056181 Helianthus annuus HOM05D000008 ORTHO05D000005 1.3e-06 57.8 110 36.4
vmacro04158 Vaccinium macrocarpon HOM05D000008 ORTHO05D000005 1.3e-06 57.8 78 47.4
Lj3g0014134 Lotus japonicus HOM05D000008 ORTHO05D000005 1.6e-06 57.4 149 32.9
EL10Ac4g10258 Beta vulgaris HOM05D000008 ORTHO05D000005 2.1e-06 57.0 62 53.2
EL10Ac4g10274 Beta vulgaris HOM05D000008 ORTHO05D000005 2.1e-06 57.0 62 53.2
Sabra09G0045400 Salix brachista HOM05D000008 ORTHO05D000005 2.1e-06 57.0 87 41.4
HanXRQChr00c0225g0572731 Helianthus annuus HOM05D000008 ORTHO05D000005 2.8e-06 56.6 123 34.1
TPR.G12180 Trifolium pratense HOM05D000008 ORTHO05D000005 2.8e-06 56.6 159 30.2
COL.COLO4_02788 Corchorus olitorius HOM05D000008 ORTHO05D000005 3.7e-06 56.2 81 44.4
Medtr3g028740 Medicago truncatula HOM05D000008 ORTHO05D000005 3.7e-06 56.2 88 42.0
Eucgr.G03385 Eucalyptus grandis HOM05D000008 ORTHO05D000005 4.8e-06 55.8 90 37.8
Glyma.12G057900 Glycine max HOM05D000008 ORTHO05D000005 4.8e-06 55.8 173 30.6
Potri.009G061500 Populus trichocarpa HOM05D000008 ORTHO05D000005 6.3e-06 55.5 103 35.9
Glyma.13G339900 Glycine max HOM05D000008 ORTHO05D000005 8.2e-06 55.1 162 32.1
Gohir.A13G216600 Gossypium hirsutum HOM05D000008 ORTHO05D000005 8.2e-06 55.1 46 58.7
Nn2g15386 Nelumbo nucifera HOM05D000008 ORTHO05D000005 8.2e-06 55.1 100 41.0


User provided reference genes

Program Settings