Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N02209 Erythranthe guttata HOM05D005109 ORTHO05D006084 6.5e-191 670.6 351 100.0
MSTRG.17494 Avicennia marina HOM05D005109 ORTHO05D006084 7.1e-97 358.2 383 58.7
Migut.D00430 Erythranthe guttata HOM05D005109 ORTHO05D006084 7.3e-94 348.2 390 59.0
Oeu063313.1 Olea europaea HOM05D005109 ORTHO05D006084 2.0e-83 313.5 359 55.4
Cc01_g18260 Coffea canephora HOM05D005109 ORTHO05D006084 1.3e-79 300.8 374 49.2
SalBow4G0920 Salvia bowleyana HOM05D005109 ORTHO05D006084 2.3e-79 300.1 369 54.5
Dinv34633 Davidia involucrata HOM05D005109 ORTHO05D006084 4.3e-78 295.8 366 53.3
Potri.002G037800 Populus trichocarpa HOM05D005109 ORTHO05D006084 3.4e-75 286.2 396 48.0
CSS0032892 Camellia sinensis var. sinensis HOM05D005109 ORTHO05D006084 7.6e-75 285.0 367 51.2
Peaxi162Scf01280g00016 Petunia axillaris HOM05D005109 ORTHO05D006084 3.8e-74 282.7 377 48.3
Solyc09g025260.4 Solanum lycopersicum HOM05D005109 ORTHO05D006084 2.1e-72 276.9 362 47.5
Manes.13G034800 Manihot esculenta HOM05D005109 ORTHO05D006084 1.0e-71 274.6 382 46.3
PGSC0003DMG400010318 Solanum tuberosum HOM05D005109 ORTHO05D006084 1.8e-71 273.9 383 46.2
Thecc.01G257200 Theobroma cacao HOM05D005109 ORTHO05D006084 1.8e-71 273.9 386 46.6
Gohir.D08G208700 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.5e-70 270.8 385 46.8
Nitab4.5_0000470g0030 Nicotiana tabacum HOM05D005109 ORTHO05D006084 1.5e-70 270.8 382 46.6
Sopen09g028260 Solanum pennellii HOM05D005109 ORTHO05D006084 2.5e-70 270.0 383 46.2
Gohir.A08G190200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 4.3e-70 269.2 385 46.8
Gorai.004G221100 Gossypium raimondii HOM05D005109 ORTHO05D006084 7.4e-70 268.5 385 46.8
CAN.G1147.5 Capsicum annuum HOM05D005109 ORTHO05D006084 1.8e-68 263.8 372 46.5
QL09p039103 Quercus lobata HOM05D005109 ORTHO05D006084 1.8e-68 263.8 397 45.3
Sabra02G0030500 Salix brachista HOM05D005109 ORTHO05D006084 2.4e-68 263.5 386 47.2
Hma1.2p1_0273F.1_g109610 Hydrangea macrophylla HOM05D005109 ORTHO05D006084 5.3e-68 262.3 371 47.7
GSVIVG01028346001 Vitis vinifera HOM05D005109 ORTHO05D006084 2.6e-67 260.0 364 49.2
Cfa002435 Carpinus fangiana HOM05D005109 ORTHO05D006084 8.5e-66 255.0 416 42.8
Nn1g02784 Nelumbo nucifera HOM05D005109 ORTHO05D006084 1.1e-65 254.6 396 44.9
TWI18G0717 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 1.1e-65 254.6 377 46.2
unitig_8.g3734 Utricularia gibba HOM05D005109 ORTHO05D006084 2.7e-64 250.0 365 48.8
EL10As5g23493 Beta vulgaris HOM05D005109 ORTHO05D006084 6.1e-64 248.8 398 42.0
Haze_24641 Corylus avellana HOM05D005109 ORTHO05D006084 7.9e-64 248.4 411 42.8
CiPaw.03G265200 Carya illinoinensis HOM05D005109 ORTHO05D006084 1.4e-63 247.7 400 43.5
Manes.12G033000 Manihot esculenta HOM05D005109 ORTHO05D006084 2.3e-63 246.9 387 42.9
Duzib211G0434 Durio zibethinus HOM05D005109 ORTHO05D006084 5.7e-62 242.3 386 44.8
Ciclev10024128m.g Citrus clementina HOM05D005109 ORTHO05D006084 7.4e-62 241.9 403 42.4
Ah.11g049450 Amaranthus hybridus HOM05D005109 ORTHO05D006084 9.7e-62 241.5 393 42.0
Duzib133G1173 Durio zibethinus HOM05D005109 ORTHO05D006084 3.7e-61 239.6 380 43.9
TWI12G1013 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 6.9e-60 235.3 378 43.9
MBI10_g20266_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 2.0e-59 233.8 369 45.8
Gohir.A11G131200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 2.6e-59 233.4 363 44.6
Gohir.D11G136900 Gossypium hirsutum HOM05D005109 ORTHO05D006084 4.5e-59 232.6 365 43.8
Gorai.007G146600 Gossypium raimondii HOM05D005109 ORTHO05D006084 4.5e-59 232.6 366 44.5
Prupe.8G222600 Prunus persica HOM05D005109 ORTHO05D006084 4.5e-59 232.6 387 42.9
Duzib138G0302 Durio zibethinus HOM05D005109 ORTHO05D006084 3.8e-58 229.6 385 43.6
RcHm_v2.0_Chr6g0287941 Rosa chinensis HOM05D005109 ORTHO05D006084 3.8e-58 229.6 418 40.2
FvH4_2g21350 Fragaria vesca HOM05D005109 ORTHO05D006084 1.4e-57 227.6 408 41.4
HanXRQChr04g0110521 Helianthus annuus HOM05D005109 ORTHO05D006084 1.4e-57 227.6 364 45.1
CANSAT01G1854 Cannabis sativa HOM05D005109 ORTHO05D006084 1.9e-57 227.3 403 39.7
COL.COLO4_03875 Corchorus olitorius HOM05D005109 ORTHO05D006084 3.2e-57 226.5 391 42.5
MD05G1196200 Malus domestica HOM05D005109 ORTHO05D006084 5.5e-57 225.7 410 41.7
Sabra05G0173800 Salix brachista HOM05D005109 ORTHO05D006084 9.4e-57 224.9 372 43.3
ECA236G0222 Erigeron canadensis HOM05D005109 ORTHO05D006084 1.6e-56 224.2 370 45.1
Cpa.g.sc50.15 Carica papaya HOM05D005109 ORTHO05D006084 3.6e-56 223.0 398 41.0
FAN24G2940 Fragaria x ananassa HOM05D005109 ORTHO05D006084 3.6e-56 223.0 408 40.2
FAN20G2708 Fragaria x ananassa HOM05D005109 ORTHO05D006084 6.1e-56 222.2 386 42.2
Eucgr.B01549 Eucalyptus grandis HOM05D005109 ORTHO05D006084 1.0e-55 221.5 388 41.0
Glyma.10G037400 Glycine max HOM05D005109 ORTHO05D006084 1.4e-55 221.1 382 41.1
AUR62011844 Chenopodium quinoa HOM05D005109 ORTHO05D006084 1.8e-55 220.7 291 49.1
MD10G1183500 Malus domestica HOM05D005109 ORTHO05D006084 2.3e-55 220.3 410 40.2
FAN15G3301 Fragaria x ananassa HOM05D005109 ORTHO05D006084 3.9e-55 219.5 392 42.1
DCAR_012551 Daucus carota HOM05D005109 ORTHO05D006084 5.1e-55 219.2 333 45.0
Nitab4.5_0005001g0040 Nicotiana tabacum HOM05D005109 ORTHO05D006084 8.8e-55 218.4 304 48.0
Phvul.007G192400 Phaseolus vulgaris HOM05D005109 ORTHO05D006084 2.0e-54 217.2 382 41.4
Eucgr.G01947 Eucalyptus grandis HOM05D005109 ORTHO05D006084 2.6e-54 216.9 377 41.1
ClCG07G001090 Citrullus lanatus HOM05D005109 ORTHO05D006084 4.4e-54 216.1 422 37.9
Lj5g0011614 Lotus japonicus HOM05D005109 ORTHO05D006084 4.4e-54 216.1 386 42.2
Glyma.13G124000 Glycine max HOM05D005109 ORTHO05D006084 1.3e-53 214.5 379 41.4
PGR031G1666 Punica granatum HOM05D005109 ORTHO05D006084 1.3e-53 214.5 371 43.4
TAR633G2233 Trochodendron aralioides HOM05D005109 ORTHO05D006084 1.3e-53 214.5 360 44.4
THA.LOC104826217 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 2.8e-53 213.4 388 42.0
VMungo0720G0144 Vigna mungo HOM05D005109 ORTHO05D006084 2.8e-53 213.4 363 42.1
Ca_28090_v3 Cicer arietinum L. HOM05D005109 ORTHO05D006084 1.8e-52 210.7 382 40.3
arahy.Tifrunner.gnm1.ann1.ZTJ4VR Arachis hypogaea HOM05D005109 ORTHO05D006084 2.0e-51 207.2 379 39.8
Lalb_Chr21g0313891 Lupinus albus HOM05D005109 ORTHO05D006084 3.5e-51 206.5 404 39.4
Actinidia07301 Actinidia chinensis HOM05D005109 ORTHO05D006084 4.5e-51 206.1 216 56.5
arahy.Tifrunner.gnm1.ann1.A1W3C7 Arachis hypogaea HOM05D005109 ORTHO05D006084 7.7e-51 205.3 368 40.2
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 7.7e-51 205.3 377 41.9
Actinidia09543 Actinidia chinensis HOM05D005109 ORTHO05D006084 3.8e-50 203.0 309 44.3
Potri.005G225200 Populus trichocarpa HOM05D005109 ORTHO05D006084 3.8e-50 203.0 390 39.2
TPR.G18473 Trifolium pratense HOM05D005109 ORTHO05D006084 3.8e-50 203.0 392 39.5
DCAR_018491 Daucus carota HOM05D005109 ORTHO05D006084 1.1e-49 201.4 363 40.8
PSO832G0134 Papaver somniferum HOM05D005109 ORTHO05D006084 1.5e-49 201.1 405 39.8
THA.LOC104800869 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 4.2e-49 199.5 403 39.5
Sed0018169 Sechium edule HOM05D005109 ORTHO05D006084 1.6e-48 197.6 389 38.8
PSO210G5198 Papaver somniferum HOM05D005109 ORTHO05D006084 2.7e-48 196.8 372 40.6
CsaV3_3G022220 Cucumis sativus L. HOM05D005109 ORTHO05D006084 3.6e-48 196.4 413 37.0
Medtr1g069855 Medicago truncatula HOM05D005109 ORTHO05D006084 1.0e-47 194.9 378 38.4
MELO3C012881.2 Cucumis melo HOM05D005109 ORTHO05D006084 1.8e-47 194.1 403 38.7
Lalb_Chr06g0170501 Lupinus albus HOM05D005109 ORTHO05D006084 3.0e-47 193.4 442 36.0
Lalb_Chr02g0152441 Lupinus albus HOM05D005109 ORTHO05D006084 4.0e-47 193.0 396 38.1
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 5.2e-47 192.6 377 38.5
Sed0014438 Sechium edule HOM05D005109 ORTHO05D006084 1.1e-46 191.4 425 36.2
Atru.chr5.1705 Acer truncatum HOM05D005109 ORTHO05D006084 1.5e-46 191.0 368 39.1
Sc17g0000590 Simmondsia chinensis HOM05D005109 ORTHO05D006084 1.5e-46 191.0 445 36.0
Rhsim13G0035600 Rhododendron simsii HOM05D005109 ORTHO05D006084 9.7e-46 188.3 399 36.8
Sp1g05000 Schrenkiella parvula HOM05D005109 ORTHO05D006084 6.3e-45 185.7 408 38.2
C03p20590 Brassica napus HOM05D005109 ORTHO05D006084 2.0e-43 180.6 385 39.5
ATR0736G115 Amborella trichopoda HOM05D005109 ORTHO05D006084 1.0e-42 178.3 341 42.5
Aqoxy5G00221 Aquilegia oxysepala HOM05D005109 ORTHO05D006084 1.3e-42 177.9 405 38.3
BcaC01g05971 Brassica carinata HOM05D005109 ORTHO05D006084 6.5e-42 175.6 387 39.3
BolC3t14465H Brassica oleracea HOM05D005109 ORTHO05D006084 6.5e-42 175.6 387 39.3
Aa31LG5G5770 Aethionema arabicum HOM05D005109 ORTHO05D006084 5.5e-41 172.6 390 40.5
AT1G06190 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 7.2e-41 172.2 415 35.7
Sp4g13630 Schrenkiella parvula HOM05D005109 ORTHO05D006084 7.2e-41 172.2 399 37.1
BcaC01g05975 Brassica carinata HOM05D005109 ORTHO05D006084 1.2e-40 171.4 384 39.1
C03p20550 Brassica napus HOM05D005109 ORTHO05D006084 1.2e-40 171.4 384 39.1
BolC3t14435H Brassica oleracea HOM05D005109 ORTHO05D006084 1.2e-40 171.4 384 39.1
Dinv33475 Davidia involucrata HOM05D005109 ORTHO05D006084 1.2e-40 171.4 180 56.1
CARHR005720 Cardamine hirsuta HOM05D005109 ORTHO05D006084 2.1e-40 170.6 419 36.5
Cc05_g01680 Coffea canephora HOM05D005109 ORTHO05D006084 1.0e-39 168.3 196 51.0
AL163U10030 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 1.4e-39 167.9 424 35.1
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 1.4e-39 167.9 401 38.7
A03p17410 Brassica napus HOM05D005109 ORTHO05D006084 6.8e-39 165.6 390 36.7
BraA03t11013Z Brassica rapa HOM05D005109 ORTHO05D006084 6.8e-39 165.6 390 36.7
Psat6g041760 Pisum sativum HOM05D005109 ORTHO05D006084 8.8e-39 165.2 375 37.3
BraA10t42751Z Brassica rapa HOM05D005109 ORTHO05D006084 1.2e-38 164.9 398 38.7
Thhalv10016746m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 1.2e-38 164.9 411 35.0
Glyma.03G163800 Glycine max HOM05D005109 ORTHO05D006084 7.5e-38 162.2 373 36.7
vmacro02668 Vaccinium macrocarpon HOM05D005109 ORTHO05D006084 7.5e-38 162.2 328 40.2
BcaB02g06816 Brassica carinata HOM05D005109 ORTHO05D006084 2.8e-37 160.2 413 37.0
BcaC05g24297 Brassica carinata HOM05D005109 ORTHO05D006084 1.4e-36 157.9 344 39.0
C05p04510 Brassica napus HOM05D005109 ORTHO05D006084 1.4e-36 157.9 344 39.0
CARHR124750 Cardamine hirsuta HOM05D005109 ORTHO05D006084 1.4e-36 157.9 350 39.7
Carub.0001s0555 Capsella rubella HOM05D005109 ORTHO05D006084 1.8e-36 157.5 422 34.4
BolC5t29222H Brassica oleracea HOM05D005109 ORTHO05D006084 4.1e-36 156.4 353 38.0
Zm00001eb258380 Zea mays HOM05D005109 ORTHO05D006084 5.4e-36 156.0 387 34.4
BcaB01g04060 Brassica carinata HOM05D005109 ORTHO05D006084 7.7e-35 152.1 337 39.5
Thhalv10007829m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 1.1e-33 148.3 352 38.1
Aa31LG1G7210 Aethionema arabicum HOM05D005109 ORTHO05D006084 4.2e-33 146.4 402 33.8
AL4G26340 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 4.2e-33 146.4 414 32.6
HPP92_012858 Vanilla planifolia HOM05D005109 ORTHO05D006084 4.0e-31 139.8 363 35.5
Glyma.19G165100 Glycine max HOM05D005109 ORTHO05D006084 5.2e-31 139.4 354 34.5
Os03g0183100 Oryza sativa ssp. japonica HOM05D005109 ORTHO05D006084 8.8e-31 138.7 338 34.3
COL.COLO4_04035 Corchorus olitorius HOM05D005109 ORTHO05D006084 1.1e-28 131.7 265 39.6
Actinidia30161 Actinidia chinensis HOM05D005109 ORTHO05D006084 7.0e-28 129.0 236 42.4
Psat0s1200g0040 Pisum sativum HOM05D005109 ORTHO05D006084 7.0e-28 129.0 279 36.9
AL1G16170 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 7.2e-25 119.0 409 31.3
AT2G31150 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 1.1e-20 105.1 222 40.1
Lj1C67T4 Lonicera japonica HOM05D005109 ORTHO05D006084 1.6e-19 101.3 312 34.0
Hund00596 Selenicereus undatus HOM05D005109 ORTHO05D006084 1.0e-15 88.6 200 35.5
Rhsim01G0262800 Rhododendron simsii HOM05D005109 ORTHO05D006084 1.5e-14 84.7 197 32.5
Migut.M01016 Erythranthe guttata HOM05D008010 ORTHO05D010085 2.3e-10 70.9 257 27.2
CDE02G3939 Ceratophyllum demersum HOM05D005109 ORTHO05D006084 6.6e-10 69.3 281 27.8
ClCG03G007530 Citrullus lanatus HOM05D008010 ORTHO05D010085 1.1e-07 62.0 211 28.9
Sed0009144 Sechium edule HOM05D008010 ORTHO05D010085 1.4e-07 61.6 209 31.6
FAN25G1163 Fragaria x ananassa HOM05D008010 ORTHO05D010085 1.8e-07 61.2 237 27.4
Peaxi162Scf00371g00017 Petunia axillaris HOM05D008010 ORTHO05D010085 2.3e-07 60.8 213 29.6
CAN.G411.60 Capsicum annuum HOM05D008010 ORTHO05D010085 4.0e-07 60.1 211 27.5
FvH4_3g07440 Fragaria vesca HOM05D008010 ORTHO05D010085 5.2e-07 59.7 237 28.3
Nitab4.5_0008462g0010 Nicotiana tabacum HOM05D008010 ORTHO05D010085 6.8e-07 59.3 211 28.4
Eucgr.D00477 Eucalyptus grandis HOM05D008010 ORTHO05D010085 1.2e-06 58.5 261 27.2
FAN21G0683 Fragaria x ananassa HOM05D008010 ORTHO05D010085 1.5e-06 58.2 237 26.6
Actinidia37514 Actinidia chinensis HOM05D000378 ORTHO05D006084 2.6e-06 57.4 72 48.6
FAN16G3557 Fragaria x ananassa HOM05D008010 ORTHO05D010085 3.4e-06 57.0 211 28.0
Gorai.010G160200 Gossypium raimondii HOM05D008010 ORTHO05D010085 3.4e-06 57.0 251 25.5
Potri.011G069300 Populus trichocarpa HOM05D008010 ORTHO05D010085 3.4e-06 57.0 213 31.5
Solyc02g072260.4 Solanum lycopersicum HOM05D008010 ORTHO05D010085 3.4e-06 57.0 209 29.2
PGR031G1466 Punica granatum HOM05D008010 ORTHO05D010085 7.5e-06 55.8 209 29.7


User provided reference genes

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