Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N02166 Erythranthe guttata HOM05D003358 ORTHO05D003864 3.6e-98 361.7 198 100.0
Migut.N02147 Erythranthe guttata HOM05D003358 ORTHO05D003864 1.8e-73 279.6 188 81.9
Migut.N02149 Erythranthe guttata HOM05D003358 ORTHO05D003864 5.5e-70 268.1 195 76.4
Migut.N02146 Erythranthe guttata HOM05D003358 ORTHO05D003864 1.3e-66 256.9 144 91.7
EL10Ac7g17196 Beta vulgaris HOM05D003358 ORTHO05D003864 4.8e-34 148.7 169 49.1
Migut.D00256 Erythranthe guttata HOM05D003358 ORTHO05D003864 8.2e-34 147.9 169 49.1
GSVIVG01011070001 Vitis vinifera HOM05D003358 ORTHO05D003864 1.1e-33 147.5 169 49.1
Actinidia24873 Actinidia chinensis HOM05D003358 ORTHO05D003864 1.4e-33 147.1 171 48.0
Nitab4.5_0007767g0030 Nicotiana tabacum HOM05D003358 ORTHO05D003864 1.4e-33 147.1 170 48.2
SalBow4G3039 Salvia bowleyana HOM05D003358 ORTHO05D003864 1.4e-33 147.1 169 48.5
Solyc06g084360.4 Solanum lycopersicum HOM05D003358 ORTHO05D003864 1.4e-33 147.1 170 47.1
Oeu001439.1 Olea europaea HOM05D003358 ORTHO05D003864 2.4e-33 146.4 169 47.9
HanXRQChr10g0282971 Helianthus annuus HOM05D003358 ORTHO05D003864 3.1e-33 146.0 169 47.3
ECA247G2569 Erigeron canadensis HOM05D003358 ORTHO05D003864 4.1e-33 145.6 169 47.3
Sc17g0003900 Simmondsia chinensis HOM05D003358 ORTHO05D003864 5.3e-33 145.2 169 47.9
MSTRG.21581 Avicennia marina HOM05D003358 ORTHO05D003864 7.0e-33 144.8 169 47.9
CAN.G1682.13 Capsicum annuum HOM05D003358 ORTHO05D003864 7.0e-33 144.8 169 47.3
CAN.G1682.14 Capsicum annuum HOM05D003358 ORTHO05D003864 7.0e-33 144.8 169 47.3
Cc01_g19840 Coffea canephora HOM05D003358 ORTHO05D003864 7.0e-33 144.8 169 46.7
Hund05356 Selenicereus undatus HOM05D003358 ORTHO05D003864 7.0e-33 144.8 169 47.9
DCAR_012453 Daucus carota HOM05D003358 ORTHO05D003864 9.1e-33 144.4 169 46.2
Dinv11261 Davidia involucrata HOM05D003358 ORTHO05D003864 9.1e-33 144.4 169 47.3
Gohir.A08G044700 Gossypium hirsutum HOM05D003358 ORTHO05D003864 9.1e-33 144.4 169 45.6
Gohir.D08G054400 Gossypium hirsutum HOM05D003358 ORTHO05D003864 9.1e-33 144.4 169 45.6
Gorai.004G054800 Gossypium raimondii HOM05D003358 ORTHO05D003864 9.1e-33 144.4 169 45.6
AUR62033697 Chenopodium quinoa HOM05D003358 ORTHO05D003864 1.2e-32 144.1 169 46.7
AUR62036783 Chenopodium quinoa HOM05D003358 ORTHO05D003864 1.2e-32 144.1 169 46.7
Lsat_1_v5_gn_9_4540 Lactuca sativa HOM05D003358 ORTHO05D003864 1.6e-32 143.7 170 46.5
Nn1g02094 Nelumbo nucifera HOM05D003358 ORTHO05D003864 1.6e-32 143.7 169 47.3
PGSC0003DMG402020120 Solanum tuberosum HOM05D003358 ORTHO05D003864 2.0e-32 143.3 169 46.7
Peaxi162Scf00783g00337 Petunia axillaris HOM05D003358 ORTHO05D003864 2.6e-32 142.9 169 47.3
Sopen06g035750 Solanum pennellii HOM05D003358 ORTHO05D003864 2.6e-32 142.9 169 46.2
TWI23G0223 Tripterygium wilfordii HOM05D003358 ORTHO05D003864 2.6e-32 142.9 169 46.7
CSS0003095 Camellia sinensis var. sinensis HOM05D003358 ORTHO05D003864 3.5e-32 142.5 169 46.2
CSS0028362 Camellia sinensis var. sinensis HOM05D003358 ORTHO05D003864 3.5e-32 142.5 169 46.2
Thecc.01G284800 Theobroma cacao HOM05D003358 ORTHO05D003864 3.5e-32 142.5 169 46.7
PSO170G4489 Papaver somniferum HOM05D003358 ORTHO05D003864 4.5e-32 142.1 168 47.0
PSO407G0137 Papaver somniferum HOM05D003358 ORTHO05D003864 4.5e-32 142.1 168 47.0
Hma1.2p1_0257F.1_g103860 Hydrangea macrophylla HOM05D003358 ORTHO05D003864 7.7e-32 141.4 169 46.7
Lj1C44G0 Lonicera japonica HOM05D003358 ORTHO05D003864 1.7e-31 140.2 169 45.6
Ciclev10020955m.g Citrus clementina HOM05D003358 ORTHO05D003864 2.2e-31 139.8 169 46.2
CARHR047070 Cardamine hirsuta HOM05D003358 ORTHO05D003864 2.9e-31 139.4 169 44.4
AT1G63900 Arabidopsis thaliana HOM05D003358 ORTHO05D003864 3.8e-31 139.0 169 44.4
CiPaw.07G095400 Carya illinoinensis HOM05D003358 ORTHO05D003864 5.0e-31 138.7 169 46.2
Eucgr.H01525 Eucalyptus grandis HOM05D003358 ORTHO05D003864 5.0e-31 138.7 169 46.7
Aa31LG1G29500 Aethionema arabicum HOM05D003358 ORTHO05D003864 6.5e-31 138.3 169 44.4
ATR0626G053 Amborella trichopoda HOM05D003358 ORTHO05D003864 6.5e-31 138.3 169 46.2
CDE05G1806 Ceratophyllum demersum HOM05D003358 ORTHO05D003864 6.5e-31 138.3 169 46.2
Gohir.A11G120000 Gossypium hirsutum HOM05D003358 ORTHO05D003864 6.5e-31 138.3 169 43.8
CDE07G0407 Ceratophyllum demersum HOM05D003358 ORTHO05D003864 8.5e-31 137.9 169 46.2
ClCG09G006810 Citrullus lanatus HOM05D003358 ORTHO05D003864 8.5e-31 137.9 169 47.9
Duzib138G0559 Durio zibethinus HOM05D003358 ORTHO05D003864 8.5e-31 137.9 169 45.0
AL2G11230 Arabidopsis lyrata HOM05D003358 ORTHO05D003864 1.1e-30 137.5 169 43.8
Carub.0002s0094 Capsella rubella HOM05D003358 ORTHO05D003864 1.1e-30 137.5 169 43.8
Actinidia00727 Actinidia chinensis HOM05D003358 ORTHO05D003864 1.5e-30 137.1 149 51.7
RcHm_v2.0_Chr6g0291861 Rosa chinensis HOM05D003358 ORTHO05D003864 1.5e-30 137.1 169 45.0
TAR633G1108 Trochodendron aralioides HOM05D003358 ORTHO05D003864 1.5e-30 137.1 169 46.2
CSS0018318 Camellia sinensis var. sinensis HOM05D003358 ORTHO05D003864 1.9e-30 136.7 169 45.6
Cpa.g.sc9.121 Carica papaya HOM05D003358 ORTHO05D003864 1.9e-30 136.7 169 43.8
MELO3C015867.2 Cucumis melo HOM05D003358 ORTHO05D003864 1.9e-30 136.7 169 47.9
CsaV3_7G028540 Cucumis sativus L. HOM05D003358 ORTHO05D003864 1.9e-30 136.7 169 47.9
unitig_0.g80 Utricularia gibba HOM05D003358 ORTHO05D003864 1.9e-30 136.7 169 45.6
FvH4_2g24080 Fragaria vesca HOM05D003358 ORTHO05D003864 3.2e-30 136.0 169 44.4
FAN15G0418 Fragaria x ananassa HOM05D003358 ORTHO05D003864 3.2e-30 136.0 169 44.4
FAN24G0501 Fragaria x ananassa HOM05D003358 ORTHO05D003864 3.2e-30 136.0 169 44.4
Glyma.02G149800 Glycine max HOM05D003358 ORTHO05D003864 3.2e-30 136.0 169 45.0
Zm00001eb329440 Zea mays HOM05D003358 ORTHO05D003864 3.2e-30 136.0 169 45.0
Haze_04760 Corylus avellana HOM05D003358 ORTHO05D003864 4.2e-30 135.6 169 45.0
vmacro02543 Vaccinium macrocarpon HOM05D003358 ORTHO05D003864 4.2e-30 135.6 154 50.6
FAN20G3017 Fragaria x ananassa HOM05D003358 ORTHO05D003864 5.5e-30 135.2 169 44.4
Thhalv10008106m.g Eutrema salsugineum HOM05D003358 ORTHO05D003864 7.2e-30 134.8 170 44.1
Manes.05G072700 Manihot esculenta HOM05D003358 ORTHO05D003864 7.2e-30 134.8 169 44.4
Zm00001eb110530 Zea mays HOM05D003358 ORTHO05D003864 9.4e-30 134.4 169 45.0
Ciclev10020957m.g Citrus clementina HOM05D003358 ORTHO05D003864 1.2e-29 134.0 169 44.4
MD03G1270200 Malus domestica HOM05D003358 ORTHO05D003864 1.2e-29 134.0 169 44.4
Sed0023278 Sechium edule HOM05D003358 ORTHO05D003864 1.2e-29 134.0 169 47.3
Glyma.10G024100 Glycine max HOM05D003358 ORTHO05D003864 2.1e-29 133.3 169 44.4
Gohir.D11G124766 Gossypium hirsutum HOM05D003358 ORTHO05D003864 2.1e-29 133.3 169 42.6
Potri.014G138000 Populus trichocarpa HOM05D003358 ORTHO05D003864 2.1e-29 133.3 169 43.8
Prupe.8G246900 Prunus persica HOM05D003358 ORTHO05D003864 2.7e-29 132.9 169 42.6
Sabra14G0104100 Salix brachista HOM05D003358 ORTHO05D003864 3.6e-29 132.5 169 43.2
A09p13990 Brassica napus HOM05D003358 ORTHO05D003864 4.7e-29 132.1 170 43.5
BraA09t37046Z Brassica rapa HOM05D003358 ORTHO05D003864 4.7e-29 132.1 170 43.5
Os07g0647800 Oryza sativa ssp. japonica HOM05D003358 ORTHO05D003864 4.7e-29 132.1 169 44.4
BcaB07g31539 Brassica carinata HOM05D003358 ORTHO05D003864 6.1e-29 131.7 170 43.5
BolC9t54582H Brassica oleracea HOM05D003358 ORTHO05D003864 6.1e-29 131.7 170 43.5
Nn4g26144 Nelumbo nucifera HOM05D003358 ORTHO05D003864 6.1e-29 131.7 169 44.4
QL12p022545 Quercus lobata HOM05D003358 ORTHO05D003864 6.1e-29 131.7 169 43.8
VMungo0720G0236 Vigna mungo HOM05D003358 ORTHO05D003864 6.1e-29 131.7 169 43.8
Aa31LG10G16880 Aethionema arabicum HOM05D003358 ORTHO05D003864 8.0e-29 131.3 169 42.6
BcaC04g22672 Brassica carinata HOM05D003358 ORTHO05D003864 8.0e-29 131.3 170 43.5
C09p16810 Brassica napus HOM05D003358 ORTHO05D003864 8.0e-29 131.3 170 43.5
SGA_v2.0_scaffold1G00442 Striga asiatica HOM05D003358 ORTHO05D003864 8.0e-29 131.3 169 46.2
Ah.08g212910 Amaranthus hybridus HOM05D003358 ORTHO05D003864 1.0e-28 131.0 143 49.0
MD11G1291200 Malus domestica HOM05D003358 ORTHO05D003864 1.0e-28 131.0 169 43.2
Phvul.007G169100 Phaseolus vulgaris HOM05D003358 ORTHO05D003864 1.0e-28 131.0 170 42.9
CANSAT25G0133 Cannabis sativa HOM05D003358 ORTHO05D003864 1.4e-28 130.6 154 48.7
arahy.Tifrunner.gnm1.ann1.KX9J6A Arachis hypogaea HOM05D003358 ORTHO05D003864 1.8e-28 130.2 169 43.8
arahy.Tifrunner.gnm1.ann1.N9ZP1U Arachis hypogaea HOM05D003358 ORTHO05D003864 1.8e-28 130.2 169 43.8
Lalb_Chr06g0163131 Lupinus albus HOM05D003358 ORTHO05D003864 1.8e-28 130.2 169 43.2
Sp2g00790 Schrenkiella parvula HOM05D003358 ORTHO05D003864 3.0e-28 129.4 170 42.9
MBI17_g17897_MAGBIO Magnolia biondii HOM05D003358 ORTHO05D003864 6.7e-28 128.3 166 45.2
THA.LOC104823098 Tarenaya hassleriana HOM05D003358 ORTHO05D003864 8.8e-28 127.9 143 46.2
Psat6g168920 Pisum sativum HOM05D003358 ORTHO05D003864 1.5e-27 127.1 169 42.6
Ca_10402_v3 Cicer arietinum L. HOM05D003358 ORTHO05D003864 2.0e-27 126.7 169 41.4
Lj5g0011221 Lotus japonicus HOM05D003358 ORTHO05D003864 4.4e-27 125.6 169 42.6
TPR.G13299 Trifolium pratense HOM05D003358 ORTHO05D003864 5.7e-27 125.2 170 41.8
Pp3c22_7850 Physcomitrium patens HOM05D003358 ORTHO05D003864 9.7e-27 124.4 169 42.0
Rhsim01G0276900 Rhododendron simsii HOM05D003358 ORTHO05D003864 9.7e-27 124.4 171 43.3
Cfa006095 Carpinus fangiana HOM05D003358 ORTHO05D003864 1.7e-26 123.6 143 46.2
Medtr1g089900 Medicago truncatula HOM05D003358 ORTHO05D003864 1.7e-26 123.6 169 40.2
HPP92_000042 Vanilla planifolia HOM05D003358 ORTHO05D003864 3.7e-26 122.5 169 41.4
AagrBONN_evm.TU.Sc2ySwM_368.2570 Anthoceros agrestis HOM05D003358 ORTHO05D003864 1.1e-25 120.9 164 40.9
AT1G59560 Arabidopsis thaliana HOM05D003358 ORTHO05D003864 9.1e-25 117.9 151 42.4
Nitab4.5_0002093g0030 Nicotiana tabacum HOM05D003358 ORTHO05D003864 9.1e-25 117.9 147 46.3
SEGI_02468 Sequoiadendron giganteum HOM05D003358 ORTHO05D003864 1.2e-24 117.5 169 40.8
Mapoly0009s0167 Marchantia polymorpha HOM05D003358 ORTHO05D003864 3.5e-24 115.9 169 38.5
TPR.G13400 Trifolium pratense HOM05D003358 ORTHO05D003864 7.7e-24 114.8 168 38.7
A04p00330 Brassica napus HOM05D003358 ORTHO05D003864 2.9e-23 112.8 148 43.2
Thhalv10024073m.g Eutrema salsugineum HOM05D003358 ORTHO05D003864 5.0e-23 112.1 183 37.7
SMO116G0196 Selaginella moellendorffii HOM05D003358 ORTHO05D003864 5.0e-23 112.1 169 38.5
BraA04t15751Z Brassica rapa HOM05D003358 ORTHO05D003864 8.5e-23 111.3 148 42.6
vmacro14942 Vaccinium macrocarpon HOM05D003358 ORTHO05D003864 1.5e-22 110.5 184 39.1
Sed0022837 Sechium edule HOM05D003358 ORTHO05D003864 1.6e-21 107.1 121 48.8
Rhsim13G0022000 Rhododendron simsii HOM05D003358 ORTHO05D003864 2.1e-21 106.7 144 48.6
Atru.chr9.1958 Acer truncatum HOM05D003358 ORTHO05D003864 3.6e-21 105.9 137 43.8
BolC4t24547H Brassica oleracea HOM05D003358 ORTHO05D003864 3.6e-21 105.9 153 40.5
Pp3c19_9460 Physcomitrium patens HOM05D003358 ORTHO05D003864 8.0e-21 104.8 169 36.7
C04p30150 Brassica napus HOM05D003358 ORTHO05D003864 1.4e-20 104.0 148 41.2
Medtr1g089940 Medicago truncatula HOM05D003358 ORTHO05D003864 1.8e-20 103.6 180 38.9
Medtr7g094290 Medicago truncatula HOM05D003358 ORTHO05D003864 1.8e-20 103.6 167 37.7
BcaC02g10340 Brassica carinata HOM05D003358 ORTHO05D003864 4.0e-20 102.4 148 40.5
Atru.chr5.1348 Acer truncatum HOM05D003358 ORTHO05D003864 1.2e-19 100.9 89 56.2
A09p54880 Brassica napus HOM05D003358 ORTHO05D003864 1.7e-18 97.1 159 38.4
Duzib211G0202 Durio zibethinus HOM05D003358 ORTHO05D003864 6.3e-18 95.1 169 37.3
Oeu011175.1 Olea europaea HOM05D000273 ORTHO05D000198 8.3e-18 94.7 123 48.0
Medtr1g089910 Medicago truncatula HOM05D003358 ORTHO05D003864 1.1e-17 94.4 141 40.4
BcaC07g42712 Brassica carinata HOM05D003358 ORTHO05D003864 1.8e-17 93.6 127 43.3
Gorai.007G133700 Gossypium raimondii HOM05D003358 ORTHO05D003864 9.1e-17 91.3 173 35.3
MD11G1291000 Malus domestica HOM05D003358 ORTHO05D003864 5.9e-16 88.6 132 38.6
Medtr1g089960 Medicago truncatula HOM05D003358 ORTHO05D003864 2.2e-15 86.7 149 38.3
Medtr1g089920 Medicago truncatula HOM05D003358 ORTHO05D003864 4.2e-14 82.4 175 36.0
Prupe.8G246200 Prunus persica HOM05D003358 ORTHO05D003864 4.2e-14 82.4 100 47.0
AL1G26420 Arabidopsis lyrata HOM05D003358 ORTHO05D003864 4.7e-13 79.0 119 41.2
TPR.G32824 Trifolium pratense HOM05D003358 ORTHO05D003864 5.2e-12 75.5 104 43.3
Lj2C1179T8 Lonicera japonica HOM05D003358 ORTHO05D003864 8.3e-10 68.2 78 46.2
DCAR_018399 Daucus carota HOM05D000027 ORTHO05D003864 2.0e-08 63.5 101 40.6
Prupe.8G246300 Prunus persica HOM05D003358 ORTHO05D003864 2.7e-08 63.2 133 33.1
Sp5g00470 Schrenkiella parvula HOM05D003358 ORTHO05D003864 2.7e-08 63.2 77 46.8
TPR.G13403 Trifolium pratense HOM05D003358 ORTHO05D003864 1.0e-07 61.2 98 37.8
CARHR173350 Cardamine hirsuta HOM05D003358 ORTHO05D003864 5.0e-07 58.9 82 42.7
Prupe.8G246600 Prunus persica HOM05D003358 ORTHO05D003864 1.1e-06 57.8 121 34.7
C03p05710 Brassica napus HOM05D003358 ORTHO05D003864 1.9e-06 57.0 120 32.5
AL1G26440 Arabidopsis lyrata HOM05D003358 ORTHO05D003864 3.3e-06 56.2 164 29.9
Aqoxy2G03211 Aquilegia oxysepala HOM05D003358 ORTHO05D003864 9.5e-06 54.7 69 44.9
TAR362G0768 Trochodendron aralioides HOM05D003358 ORTHO05D003864 9.5e-06 54.7 63 42.9


User provided reference genes

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