Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N02077 Erythranthe guttata HOM05D007570 ORTHO05D009365 1.9e-149 534.3 263 100.0
Migut.O00416 Erythranthe guttata HOM05D007570 ORTHO05D009365 9.6e-109 399.1 329 66.3
MSTRG.27980 Avicennia marina HOM05D007570 ORTHO05D009365 3.7e-68 264.2 365 44.9
SalBow3G3428 Salvia bowleyana HOM05D007570 ORTHO05D009365 5.0e-57 227.3 346 41.9
Solyc01g099530.3 Solanum lycopersicum HOM05D001281 ORTHO05D001139 9.2e-51 206.5 365 38.4
Cc02_g33170 Coffea canephora HOM05D007570 ORTHO05D009365 2.3e-49 201.8 328 40.5
Nitab4.5_0002344g0040 Nicotiana tabacum HOM05D007570 ORTHO05D009365 1.5e-45 189.1 368 36.4
Peaxi162Scf00037g01028 Petunia axillaris HOM05D007570 ORTHO05D009365 7.0e-43 180.3 266 41.4
Dinv40321 Davidia involucrata HOM05D007570 ORTHO05D009365 6.0e-42 177.2 281 41.3
Nitab4.5_0008329g0060 Nicotiana tabacum HOM05D001281 ORTHO05D009365 6.0e-42 177.2 374 35.3
Lj5C421G19 Lonicera japonica HOM05D007570 ORTHO05D009365 7.8e-42 176.8 342 38.6
Lsat_1_v5_gn_5_103340 Lactuca sativa HOM05D007570 ORTHO05D009365 3.9e-41 174.5 287 40.1
Sc11g0002770 Simmondsia chinensis HOM05D007570 ORTHO05D009365 1.2e-39 169.5 211 46.0
Sopen01g043040 Solanum pennellii HOM05D007570 ORTHO05D009365 1.2e-39 169.5 363 34.4
PGSC0003DMG400024750 Solanum tuberosum HOM05D007570 ORTHO05D009365 2.1e-39 168.7 363 33.6
CAN.G665.19 Capsicum annuum HOM05D007570 ORTHO05D009365 2.0e-37 162.2 347 34.9
Rhsim07G0187500 Rhododendron simsii HOM05D001660 ORTHO05D003277 1.3e-36 159.5 269 39.8
CSS0020002 Camellia sinensis var. sinensis HOM05D007570 ORTHO05D009365 2.3e-33 148.7 338 34.9
Oeu043366.2 Olea europaea HOM05D007570 ORTHO05D009365 1.5e-32 146.0 358 33.5
CSS0011257 Camellia sinensis var. sinensis HOM05D007570 ORTHO05D009365 2.5e-32 145.2 338 34.6
DCAR_001944 Daucus carota HOM05D007570 ORTHO05D009365 7.3e-32 143.7 180 45.6
Eucgr.F03126 Eucalyptus grandis HOM05D007570 ORTHO05D009365 5.8e-29 134.0 128 52.3
PSO832G0129 Papaver somniferum HOM05D007570 ORTHO05D009365 5.8e-29 134.0 163 46.6
Eucgr.A02378 Eucalyptus grandis HOM05D007570 ORTHO05D009365 7.6e-29 133.7 149 49.7
TPR.G12015 Trifolium pratense HOM05D007570 ORTHO05D009365 1.1e-27 129.8 156 45.5
Atru.chr6.18 Acer truncatum HOM05D007570 ORTHO05D009365 1.4e-27 129.4 323 29.7
Ah.10g033640 Amaranthus hybridus HOM05D007570 ORTHO05D009365 4.1e-27 127.9 248 33.9
Phvul.002G227100 Phaseolus vulgaris HOM05D007570 ORTHO05D009365 7.1e-27 127.1 150 46.7
Medtr8g064830 Medicago truncatula HOM05D007570 ORTHO05D009365 9.2e-27 126.7 156 46.2
Hma1.2p1_1374F.1_g278810 Hydrangea macrophylla HOM05D007570 ORTHO05D009365 2.1e-26 125.6 273 31.9
Psat7g112960 Pisum sativum HOM05D007570 ORTHO05D009365 2.1e-26 125.6 329 30.1
Duzib106G0838 Durio zibethinus HOM05D007570 ORTHO05D009365 3.5e-26 124.8 162 45.1
Medtr4g089005 Medicago truncatula HOM05D007570 ORTHO05D009365 3.5e-26 124.8 163 44.8
PSO210G6895 Papaver somniferum HOM05D007570 ORTHO05D009365 3.5e-26 124.8 169 43.2
CANSAT78G1681 Cannabis sativa HOM05D007570 ORTHO05D009365 4.6e-26 124.4 325 31.1
FvH4_7g02371 Fragaria vesca HOM05D007570 ORTHO05D009365 4.6e-26 124.4 124 51.6
FAN06G1073 Fragaria x ananassa HOM05D007570 ORTHO05D009365 4.6e-26 124.4 124 51.6
VMungo0251G2923 Vigna mungo HOM05D007570 ORTHO05D009365 4.6e-26 124.4 126 50.0
MD11G1161200 Malus domestica HOM05D007570 ORTHO05D009365 7.8e-26 123.6 170 41.8
Potri.019G043101 Populus trichocarpa HOM05D007570 ORTHO05D009365 7.8e-26 123.6 303 32.7
Lj4g0005287 Lotus japonicus HOM05D007570 ORTHO05D009365 1.3e-25 122.9 126 50.0
Ciclev10030585m.g Citrus clementina HOM05D007570 ORTHO05D009365 2.3e-25 122.1 121 50.4
CiPaw.05G211100 Carya illinoinensis HOM05D007570 ORTHO05D009365 3.0e-25 121.7 297 31.6
PGR031G1904 Punica granatum HOM05D007570 ORTHO05D009365 3.0e-25 121.7 167 40.7
Thecc.05G226900 Theobroma cacao HOM05D007570 ORTHO05D009365 3.0e-25 121.7 133 49.6
Lalb_Chr16g0383631 Lupinus albus HOM05D007570 ORTHO05D009365 5.1e-25 120.9 145 46.9
TWI34G1038 Tripterygium wilfordii HOM05D007570 ORTHO05D009365 8.6e-25 120.2 298 30.2
Sabra19G0053700 Salix brachista HOM05D007570 ORTHO05D009365 2.5e-24 118.6 167 43.1
Hund19367 Selenicereus undatus HOM05D007570 ORTHO05D009365 2.5e-24 118.6 215 35.3
Glyma.07G194900 Glycine max HOM05D007570 ORTHO05D009365 7.3e-24 117.1 156 42.9
HanXRQChr10g0294781 Helianthus annuus HOM05D007570 ORTHO05D009365 7.3e-24 117.1 258 34.1
MD03G1142100 Malus domestica HOM05D007570 ORTHO05D009365 7.3e-24 117.1 141 44.7
Gohir.A01G216000 Gossypium hirsutum HOM05D007570 ORTHO05D009365 9.6e-24 116.7 140 45.7
Gorai.002G249100 Gossypium raimondii HOM05D007570 ORTHO05D009365 2.8e-23 115.2 140 45.0
Gohir.D01G204800 Gossypium hirsutum HOM05D007570 ORTHO05D009365 3.6e-23 114.8 140 45.0
Ca_18529_v3 Cicer arietinum L. HOM05D001301 ORTHO05D009365 4.7e-23 114.4 149 43.0
HPP92_020822 Vanilla planifolia HOM05D007570 ORTHO05D009365 2.4e-22 112.1 309 28.5
arahy.Tifrunner.gnm1.ann1.3SI8EE Arachis hypogaea HOM05D000112 ORTHO05D009365 4.0e-22 111.3 306 29.1
arahy.Tifrunner.gnm1.ann1.K3ZWQ5 Arachis hypogaea HOM05D000112 ORTHO05D009365 4.0e-22 111.3 306 29.1
FAN01G3111 Fragaria x ananassa HOM05D007570 ORTHO05D009365 6.9e-22 110.5 124 48.4
Manes.08G159400 Manihot esculenta HOM05D007570 ORTHO05D009365 5.8e-21 107.5 355 28.7
Actinidia35565 Actinidia chinensis HOM05D007570 ORTHO05D009365 9.9e-21 106.7 272 32.4
BolC9t59076H Brassica oleracea HOM05D007570 ORTHO05D009365 1.1e-19 103.2 265 32.5
Aqoxy5G04288 Aquilegia oxysepala HOM05D007570 ORTHO05D009365 3.2e-19 101.7 112 46.4
Thhalv10012597m.g Eutrema salsugineum HOM05D007570 ORTHO05D009365 7.1e-19 100.5 230 33.5
EL10Ac2g03647 Beta vulgaris HOM05D007570 ORTHO05D009365 9.3e-19 100.1 185 35.1
C09p62380 Brassica napus HOM05D007570 ORTHO05D009365 1.2e-18 99.8 267 32.2
Carub.0006s1294 Capsella rubella HOM05D007570 ORTHO05D009365 1.6e-18 99.4 264 31.8
Cpa.g.sc909.2 Carica papaya HOM05D007570 ORTHO05D009365 2.7e-18 98.6 162 41.4
AL6G25570 Arabidopsis lyrata HOM05D007570 ORTHO05D009365 2.5e-16 92.0 257 31.5
Nn1g08626 Nelumbo nucifera HOM05D007570 ORTHO05D009365 5.6e-16 90.9 96 47.9
Sp6g29270 Schrenkiella parvula HOM05D007570 ORTHO05D009365 7.3e-16 90.5 250 32.4
BcaB08g36948 Brassica carinata HOM05D007570 ORTHO05D009365 1.6e-15 89.4 272 30.5
BcaC04g19010 Brassica carinata HOM05D007570 ORTHO05D009365 3.6e-15 88.2 260 30.8
CARHR198540 Cardamine hirsuta HOM05D007570 ORTHO05D009365 5.3e-14 84.3 257 30.4
ECA234G3939 Erigeron canadensis HOM05D007570 ORTHO05D009365 3.8e-12 78.2 207 27.1
SalBow3G4252 Salvia bowleyana HOM05D007570 ORTHO05D009365 1.9e-11 75.9 44 72.7
AT5G14770 Arabidopsis thaliana HOM05D007570 ORTHO05D009365 5.4e-11 74.3 257 28.8
Lj5C430G7 Lonicera japonica HOM05D007570 ORTHO05D009365 7.1e-11 73.9 77 51.9
FAN03G2441 Fragaria x ananassa HOM05D002709 ORTHO05D002914 1.6e-10 72.8 119 32.8
Gohir.D08G158800 Gossypium hirsutum HOM05D000104 ORTHO05D008354 2.1e-10 72.4 178 28.7
AUR62028022 Chenopodium quinoa HOM05D007570 ORTHO05D009365 3.5e-10 71.6 122 35.2
Glyma.01G073500 Glycine max HOM05D000104 ORTHO05D009920 4.6e-10 71.2 195 30.3
Cfa016108 Carpinus fangiana HOM05D007570 ORTHO05D009365 1.3e-09 69.7 257 27.6
TAR625G0236 Trochodendron aralioides HOM05D007570 ORTHO05D009365 1.3e-09 69.7 44 59.1
Lj5C430G10 Lonicera japonica HOM05D007570 ORTHO05D009365 3.9e-09 68.2 45 57.8
Nitab4.5_0004679g0050 Nicotiana tabacum HOM05D007291 ORTHO05D009038 5.1e-09 67.8 172 27.3
FvH4_3g42580 Fragaria vesca HOM05D000002 ORTHO05D000001 1.1e-08 66.6 136 30.9
FAN11G0418 Fragaria x ananassa HOM05D003757 ORTHO05D000090 1.1e-08 66.6 147 27.9
MD04G1014300 Malus domestica HOM05D000162 ORTHO05D000090 1.5e-08 66.2 209 24.4
Thecc.10G186400 Theobroma cacao HOM05D007552 ORTHO05D009397 2.5e-08 65.5 181 26.5
AT3G09650 Arabidopsis thaliana HOM05D000855 ORTHO05D008530 3.3e-08 65.1 214 26.6
AagrBONN_evm.TU.Sc2ySwM_228.644 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.3e-08 64.7 220 23.2
MD00G1202400 Malus domestica HOM05D007570 ORTHO05D009365 4.3e-08 64.7 104 35.6
Thhalv10011454m.g Eutrema salsugineum HOM05D002453 ORTHO05D008746 5.6e-08 64.3 219 28.3
FAN02G3427 Fragaria x ananassa HOM05D000855 ORTHO05D008530 5.6e-08 64.3 125 33.6
Nitab4.5_0007769g0010 Nicotiana tabacum HOM05D007291 ORTHO05D009038 5.6e-08 64.3 166 27.7
Aa31LG3G2070 Aethionema arabicum HOM05D000855 ORTHO05D008530 7.4e-08 63.9 238 26.1
Aqoxy1G01216 Aquilegia oxysepala HOM05D007623 ORTHO05D009641 9.6e-08 63.5 146 26.0
Migut.B00293 Erythranthe guttata HOM05D000001 ORTHO05D000003 1.3e-07 63.2 186 27.4
FvH4_6g15290 Fragaria vesca HOM05D000855 ORTHO05D008530 1.3e-07 63.2 125 33.6
FAN10G3422 Fragaria x ananassa HOM05D007570 ORTHO05D009365 1.3e-07 63.2 98 39.8
arahy.Tifrunner.gnm1.ann1.3K1SXW Arachis hypogaea HOM05D000162 ORTHO05D000090 2.1e-07 62.4 211 22.7
DCAR_027464 Daucus carota HOM05D005622 ORTHO05D002854 2.1e-07 62.4 183 29.0
Lj5g0021887 Lotus japonicus HOM05D000855 ORTHO05D008530 2.1e-07 62.4 226 24.8
RcHm_v2.0_Chr1g0384651 Rosa chinensis HOM05D007570 ORTHO05D009365 2.8e-07 62.0 173 30.6
Sed0015819 Sechium edule HOM05D000001 ORTHO05D007291 2.8e-07 62.0 214 27.1
Cc07_g13560 Coffea canephora HOM05D007291 ORTHO05D009038 3.7e-07 61.6 183 29.0
Duzib128G1161 Durio zibethinus HOM05D007552 ORTHO05D009397 3.7e-07 61.6 179 24.0
FAN14G2211 Fragaria x ananassa HOM05D000855 ORTHO05D008530 3.7e-07 61.6 125 33.6
Gohir.A08G017700 Gossypium hirsutum HOM05D006842 ORTHO05D008908 3.7e-07 61.6 112 33.9
Gorai.004G025400 Gossypium raimondii HOM05D006842 ORTHO05D008908 4.8e-07 61.2 112 33.9
Sabra10G0105800 Salix brachista HOM05D007623 ORTHO05D009641 4.8e-07 61.2 246 21.1
ClCG10G018100 Citrullus lanatus HOM05D006596 ORTHO05D008497 6.2e-07 60.8 241 22.8
MELO3C026661.2 Cucumis melo HOM05D007623 ORTHO05D009641 6.2e-07 60.8 139 28.8
Lj1P1174T24 Lonicera japonica HOM05D000001 ORTHO05D000003 6.2e-07 60.8 220 25.5
Oeu030203.1 Olea europaea HOM05D006287 ORTHO05D000003 6.2e-07 60.8 204 27.0
GSVIVG01013840001 Vitis vinifera HOM05D007570 ORTHO05D009365 6.2e-07 60.8 44 56.8
EL10Ac7g17347 Beta vulgaris HOM05D000855 ORTHO05D008530 8.1e-07 60.5 244 25.4
CiPaw.09G071900 Carya illinoinensis HOM05D000001 ORTHO05D000003 8.1e-07 60.5 217 24.4
MELO3C024749.2 Cucumis melo HOM05D021906 ORTHO05D009365 8.1e-07 60.5 52 53.8
FAN09G2418 Fragaria x ananassa HOM05D000855 ORTHO05D008530 8.1e-07 60.5 125 33.6
CARHR084060 Cardamine hirsuta HOM05D000855 ORTHO05D008530 1.1e-06 60.1 214 25.2
CsaV3_3G030580 Cucumis sativus L. HOM05D007623 ORTHO05D009641 1.1e-06 60.1 140 27.9
Hma1.2p1_0295F.1_g116530 Hydrangea macrophylla HOM05D000001 ORTHO05D000003 1.1e-06 60.1 217 24.0
Prupe.6G241600 Prunus persica HOM05D000855 ORTHO05D008530 1.1e-06 60.1 134 31.3
Sabra16G0092100 Salix brachista HOM05D000855 ORTHO05D008530 1.1e-06 60.1 131 30.5
BcaB01g06201 Brassica carinata HOM05D007455 ORTHO05D009431 1.4e-06 59.7 146 29.5
Prupe.2G007100 Prunus persica HOM05D007570 ORTHO05D009365 1.4e-06 59.7 113 36.3
Ca_26205_v3 Cicer arietinum L. HOM05D002453 ORTHO05D008746 1.8e-06 59.3 174 28.7
Rhsim02G0073500 Rhododendron simsii HOM05D007128 ORTHO05D009059 1.8e-06 59.3 116 31.9
Thecc.05G050200 Theobroma cacao HOM05D000001 ORTHO05D009574 1.8e-06 59.3 212 23.6
GSVIVG01025536001 Vitis vinifera HOM05D000855 ORTHO05D008530 1.8e-06 59.3 131 32.1
Cfa017505 Carpinus fangiana HOM05D000855 ORTHO05D008530 2.4e-06 58.9 131 32.8
Haze_20657 Corylus avellana HOM05D000855 ORTHO05D008530 2.4e-06 58.9 131 32.8
Eucgr.D01013 Eucalyptus grandis HOM05D006842 ORTHO05D008908 2.4e-06 58.9 142 33.1
Hma1.2p1_0113F.1_g055070 Hydrangea macrophylla HOM05D000001 ORTHO05D000003 2.4e-06 58.9 218 22.5
Peaxi162Scf00722g00001 Petunia axillaris HOM05D000001 ORTHO05D014165 2.4e-06 58.9 179 25.1
Zm00001eb118400 Zea mays HOM05D002453 ORTHO05D002107 2.4e-06 58.9 208 27.4
A04p29080 Brassica napus HOM05D000104 ORTHO05D009920 3.1e-06 58.5 264 22.0
Psat4g140040 Pisum sativum HOM05D002453 ORTHO05D008746 3.1e-06 58.5 174 28.2
Hund25149 Selenicereus undatus HOM05D007623 ORTHO05D009641 3.1e-06 58.5 122 27.0
Sc23g0002190 Simmondsia chinensis HOM05D000001 ORTHO05D000003 3.1e-06 58.5 225 22.7
Ah.08g211930 Amaranthus hybridus HOM05D000855 ORTHO05D008530 4.0e-06 58.2 243 23.5
Ca_11448_v3 Cicer arietinum L. HOM05D000855 ORTHO05D008530 4.0e-06 58.2 222 25.2
COL.COLO4_21653 Corchorus olitorius HOM05D000162 ORTHO05D000090 4.0e-06 58.2 205 22.9
Lsat_1_v5_gn_9_88941 Lactuca sativa HOM05D003039 ORTHO05D008410 4.0e-06 58.2 176 29.0
Atru.BG.218.p Acer truncatum HOM05D000855 ORTHO05D008530 5.3e-06 57.8 131 32.1
Aqoxy4G00275 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 5.3e-06 57.8 218 23.9
Gorai.013G000300 Gossypium raimondii HOM05D007063 ORTHO05D008822 5.3e-06 57.8 156 28.2
Manes.08G003100 Manihot esculenta HOM05D000855 ORTHO05D008530 5.3e-06 57.8 131 29.8
Rhsim02G0072100 Rhododendron simsii HOM05D007128 ORTHO05D009059 5.3e-06 57.8 116 31.0
Atru.chr3.547 Acer truncatum HOM05D000891 ORTHO05D000761 6.9e-06 57.4 207 25.1
Hma1.2p1_0111F.1_g053850 Hydrangea macrophylla HOM05D000855 ORTHO05D008530 6.9e-06 57.4 133 30.1
Hma1.2p1_0111F.1_g053860 Hydrangea macrophylla HOM05D000855 ORTHO05D008530 6.9e-06 57.4 133 30.1
MD00G1202300 Malus domestica HOM05D007570 ORTHO05D009365 6.9e-06 57.4 53 49.1
MD11G1161100 Malus domestica HOM05D007570 ORTHO05D009365 6.9e-06 57.4 45 48.9
Potri.016G085300 Populus trichocarpa HOM05D000855 ORTHO05D008530 6.9e-06 57.4 131 29.8
AagrBONN_evm.TU.Sc2ySwM_117.623 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.0e-06 57.0 178 25.8
AagrBONN_evm.TU.Sc2ySwM_344.5118 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.0e-06 57.0 191 25.7
DCAR_003849 Daucus carota HOM05D000855 ORTHO05D008530 9.0e-06 57.0 125 32.8
DCAR_009287 Daucus carota HOM05D000855 ORTHO05D008530 9.0e-06 57.0 125 32.8
MD15G1404200 Malus domestica HOM05D000001 ORTHO05D007291 9.0e-06 57.0 186 23.1
Os02g0735800 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D000003 9.0e-06 57.0 180 22.2
vmacro03705 Vaccinium macrocarpon HOM05D007956 ORTHO05D010152 9.0e-06 57.0 191 23.6
GSVIVG01018018001 Vitis vinifera HOM05D000001 ORTHO05D000003 9.0e-06 57.0 227 24.7


User provided reference genes

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