Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 2013.0 952 100.0
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 0.0e+00 1671.4 975 80.4
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 0.0e+00 1655.6 956 80.8
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 0.0e+00 1649.4 964 79.6
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 0.0e+00 1637.5 978 78.4
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 0.0e+00 1599.7 968 76.5
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 0.0e+00 1593.2 977 76.6
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 0.0e+00 1589.7 961 77.4
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1584.7 978 76.1
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1584.7 974 76.2
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1579.7 974 75.8
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 0.0e+00 1578.5 977 75.7
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 0.0e+00 1576.6 973 75.0
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1576.2 970 76.0
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1575.5 970 75.3
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 0.0e+00 1573.1 965 76.0
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 0.0e+00 1573.1 964 76.0
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1572.4 765 96.6
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 0.0e+00 1570.1 977 75.5
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 0.0e+00 1569.3 973 75.0
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 0.0e+00 1568.1 976 75.8
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 0.0e+00 1568.1 947 76.9
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 0.0e+00 1565.8 965 75.4
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 0.0e+00 1564.7 973 74.6
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 0.0e+00 1562.7 969 75.0
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1552.7 972 75.2
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 0.0e+00 1552.0 966 75.3
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1551.2 970 74.1
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1551.2 977 74.5
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 0.0e+00 1550.8 969 74.6
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1546.9 974 73.8
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 0.0e+00 1540.0 991 72.9
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 0.0e+00 1539.2 970 74.4
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 0.0e+00 1539.2 974 73.4
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1538.1 951 75.4
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1538.1 974 73.4
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1530.0 970 73.1
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1528.1 973 73.5
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1528.1 952 74.3
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 0.0e+00 1527.3 972 73.0
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1526.9 975 72.9
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1526.5 979 73.2
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1525.8 972 73.4
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1525.4 972 72.7
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 0.0e+00 1525.0 972 73.8
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1523.1 961 74.6
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1521.5 967 73.6
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1520.0 978 73.2
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1519.2 960 74.2
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 0.0e+00 1516.5 975 73.5
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1516.5 962 74.3
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 0.0e+00 1514.6 980 73.2
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1514.2 972 73.0
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1513.8 970 73.2
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1513.8 975 72.2
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1513.4 959 74.1
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1511.5 958 73.3
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1511.1 978 73.0
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1510.4 970 73.5
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1509.6 975 72.4
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1506.5 981 71.5
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1506.1 965 72.3
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 0.0e+00 1505.0 963 72.5
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1502.6 968 72.6
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1500.3 969 72.0
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1500.0 961 73.7
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 0.0e+00 1499.2 971 72.5
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 0.0e+00 1498.0 971 72.1
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1498.0 973 71.8
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 0.0e+00 1497.6 973 71.7
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 0.0e+00 1496.1 984 71.7
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 0.0e+00 1496.1 978 72.1
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1494.6 969 71.4
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1493.8 958 72.7
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1492.6 976 71.4
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 0.0e+00 1491.9 972 72.3
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1491.1 984 71.5
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1489.9 957 73.6
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1489.2 966 72.5
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1488.8 966 72.8
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1487.6 974 70.8
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1486.1 973 72.4
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 0.0e+00 1483.8 929 75.2
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 0.0e+00 1482.2 983 71.4
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 0.0e+00 1482.2 956 73.5
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1480.3 972 71.2
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1478.4 974 71.3
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 0.0e+00 1468.8 973 70.3
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1466.4 970 71.0
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 0.0e+00 1461.4 973 70.4
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 0.0e+00 1461.0 963 71.1
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1460.7 923 73.8
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1455.3 967 71.4
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 0.0e+00 1453.7 972 70.7
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 0.0e+00 1449.9 939 70.8
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 0.0e+00 1440.2 957 71.2
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1435.6 887 75.2
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 0.0e+00 1433.3 955 70.8
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 0.0e+00 1430.2 958 70.6
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 0.0e+00 1429.5 966 70.2
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 0.0e+00 1426.4 958 70.3
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1423.3 954 69.9
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 0.0e+00 1421.0 952 70.5
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 0.0e+00 1420.2 958 69.6
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1413.3 956 69.7
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1413.3 956 69.7
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 0.0e+00 1403.7 994 68.5
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1401.7 949 69.5
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1401.0 949 69.7
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 0.0e+00 1395.2 973 68.0
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1390.9 955 68.9
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1390.9 950 69.5
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1386.3 985 66.7
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1385.5 950 69.3
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 0.0e+00 1382.5 958 68.7
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1380.2 874 72.9
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1350.9 852 73.1
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1334.3 848 72.9
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 0.0e+00 1321.2 1000 62.1
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1318.5 768 78.0
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1313.9 950 66.3
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1291.2 956 65.8
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1276.5 956 64.6
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1239.6 830 69.2
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1183.3 767 72.1
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1181.8 774 71.8
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 0.0e+00 1179.5 786 70.5
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 0.0e+00 1077.4 950 55.2
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 1.2e-303 1046.6 934 54.5
CDE05G1313 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 4.9e-302 1041.2 679 71.3
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 2.2e-286 989.2 948 53.3
Lj9A80G16 Lonicera japonica HOM05D004082 ORTHO05D004729 2.7e-276 955.7 713 65.4
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 3.6e-276 955.3 952 50.8
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 8.8e-275 950.7 944 51.4
Nitab4.5_0003227g0010 Nicotiana tabacum HOM05D004082 ORTHO05D004729 3.4e-250 869.0 562 73.3
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 7.8e-239 831.2 848 50.5
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 1.3e-204 717.6 402 79.9
MBI17_g12862_MAGBIO Magnolia biondii HOM05D004082 ORTHO05D004729 2.5e-128 464.2 286 73.1
QL03p006635 Quercus lobata HOM05D004082 ORTHO05D004729 2.4e-115 421.0 344 60.5
CAN.G623.33 Capsicum annuum HOM05D004082 ORTHO05D004729 1.3e-108 398.7 364 56.3
Atru.chr1.88 Acer truncatum HOM05D004082 ORTHO05D004729 5.1e-97 360.1 409 48.7
Atru.chr2.402 Acer truncatum HOM05D004082 ORTHO05D004729 9.6e-96 355.9 213 75.1
SEGI_31510 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 9.3e-91 339.3 202 74.8
QL03p006592 Quercus lobata HOM05D004082 ORTHO05D004729 9.0e-86 322.8 275 58.5
Gorai.013G124200 Gossypium raimondii HOM05D004082 ORTHO05D004729 9.9e-85 319.3 192 75.5
SEGI_00836 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 2.1e-74 285.0 159 79.2
Lj9A80G18 Lonicera japonica HOM05D004082 ORTHO05D004729 1.2e-69 269.2 211 60.2
PRCOL_00002375 Prasinoderma coloniale HOM05D004082 ORTHO05D004729 4.2e-67 260.8 743 29.3
CDE05G2291 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 3.9e-65 254.2 155 73.5
Atru.chr1.89 Acer truncatum HOM05D004082 ORTHO05D004729 9.6e-64 249.6 143 76.9
QL03p006553 Quercus lobata HOM05D004082 ORTHO05D004729 9.7e-56 223.0 369 40.4
Cfa025543 Carpinus fangiana HOM05D004082 ORTHO05D004729 4.5e-45 187.6 917 23.2
arahy.Tifrunner.gnm1.ann1.3W7GTE Arachis hypogaea HOM05D004082 ORTHO05D004729 3.1e-38 164.9 96 75.0
SGA_v2.0_scaffold54G19617 Striga asiatica HOM05D004082 ORTHO05D004729 5.9e-37 160.6 149 56.4
CAN.G22.21 Capsicum annuum HOM05D004082 ORTHO05D004729 2.2e-36 158.7 145 56.6
CDE05G1624 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 1.4e-33 149.4 92 75.0
Lj9A80T26 Lonicera japonica HOM05D004082 ORTHO05D004729 3.3e-32 144.8 92 70.7
CAN.G623.34 Capsicum annuum HOM05D004082 ORTHO05D004729 3.7e-31 141.4 89 71.9
Atru.chr2.403 Acer truncatum HOM05D004082 ORTHO05D004729 1.9e-27 129.0 94 60.6
Hund21239 Selenicereus undatus HOM05D004082 ORTHO05D004729 7.2e-27 127.1 163 41.1
ATR0626G076 Amborella trichopoda HOM05D004082 ORTHO05D004729 1.4e-25 122.9 97 56.7
CBR_g49561 Chara braunii HOM05D000019 ORTHO05D000353 1.3e-23 116.3 183 38.3
VMungo1127G1159 Vigna mungo HOM05D004082 ORTHO05D004729 1.3e-20 106.3 184 34.8
SGA_v2.0_scaffold54G19618 Striga asiatica HOM05D004082 ORTHO05D004729 1.7e-20 105.9 121 47.9
Cfa024522 Carpinus fangiana HOM05D004082 ORTHO05D004729 3.8e-20 104.8 583 24.9
CAN.G2092.2 Capsicum annuum HOM05D004082 ORTHO05D004729 2.7e-18 98.6 114 50.0
Hund20275 Selenicereus undatus HOM05D004082 ORTHO05D004729 3.1e-14 85.1 46 78.3
QL03p073950 Quercus lobata HOM05D004082 ORTHO05D004729 1.5e-11 76.3 118 38.1
Hma1.2p1_0928F.1_g237760 Hydrangea macrophylla HOM05D004082 ORTHO05D004729 2.8e-10 72.0 44 75.0
Solyc12g038840.2 Solanum lycopersicum HOM05D004082 ORTHO05D004729 2.8e-10 72.0 76 50.0
QL03p007034 Quercus lobata HOM05D000125 ORTHO05D000120 1.4e-09 69.7 71 50.7
CSS0034197 Camellia sinensis var. sinensis HOM05D000231 ORTHO05D000132 3.7e-07 61.6 78 42.3
SEGI_10811 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 4.1e-06 58.2 44 61.4


User provided reference genes

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