Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N01991 Erythranthe guttata HOM05D007200 ORTHO05D009030 2.4e-176 622.1 319 100.0
Migut.O00553 Erythranthe guttata HOM05D007200 ORTHO05D009030 2.1e-148 529.3 280 98.2
MSTRG.27987 Avicennia marina HOM05D007200 ORTHO05D009030 1.7e-105 386.7 279 73.1
SGA_v2.0_scaffold98G29315 Striga asiatica HOM05D007200 ORTHO05D009030 6.0e-103 378.3 265 74.7
Actinidia24645 Actinidia chinensis HOM05D007200 ORTHO05D009030 1.4e-99 367.1 284 65.8
Rhsim05G0141700 Rhododendron simsii HOM05D007200 ORTHO05D009030 4.5e-98 362.1 259 68.7
Lj9C128T5 Lonicera japonica HOM05D007200 ORTHO05D009030 1.3e-97 360.5 262 70.2
CSS0011307 Camellia sinensis var. sinensis HOM05D007200 ORTHO05D009030 4.9e-97 358.6 285 64.9
TAR365G0308 Trochodendron aralioides HOM05D007200 ORTHO05D009030 6.5e-97 358.2 290 63.1
GSVIVG01031113001 Vitis vinifera HOM05D007200 ORTHO05D009030 1.1e-96 357.5 269 68.8
Ciclev10002020m.g Citrus clementina HOM05D007200 ORTHO05D009030 1.4e-96 357.1 285 64.2
Lsat_1_v5_gn_9_87521 Lactuca sativa HOM05D007200 ORTHO05D009030 1.4e-96 357.1 281 65.5
TAR365G0906 Trochodendron aralioides HOM05D007200 ORTHO05D009030 1.9e-96 356.7 290 62.8
Aqoxy5G00700 Aquilegia oxysepala HOM05D007200 ORTHO05D009030 3.5e-95 352.4 286 63.3
unitig_746.g26859 Utricularia gibba HOM05D004477 ORTHO05D005615 1.0e-94 350.9 272 63.2
HanXRQChr11g0339441 Helianthus annuus HOM05D007200 ORTHO05D009030 1.9e-93 346.7 270 67.4
Lj9C124T9 Lonicera japonica HOM05D007200 ORTHO05D009030 3.3e-93 345.9 286 64.0
RcHm_v2.0_Chr3g0455321 Rosa chinensis HOM05D007200 ORTHO05D009030 3.3e-93 345.9 251 68.9
Sabra05G0032400 Salix brachista HOM05D007200 ORTHO05D009030 3.3e-93 345.9 286 64.0
Atru.chr12.1493 Acer truncatum HOM05D007200 ORTHO05D009030 4.3e-93 345.5 285 62.5
Manes.08G119500 Manihot esculenta HOM05D007200 ORTHO05D009030 4.3e-93 345.5 283 62.9
Peaxi162Scf00071g00636 Petunia axillaris HOM05D007200 ORTHO05D009030 4.3e-93 345.5 280 62.5
Glyma.10G153100 Glycine max HOM05D007200 ORTHO05D009030 7.4e-93 344.7 257 67.7
Haze_04164 Corylus avellana HOM05D007200 ORTHO05D009030 9.6e-93 344.4 283 62.9
ECA236G3394 Erigeron canadensis HOM05D007200 ORTHO05D009030 9.6e-93 344.4 281 64.1
VMungo0720G1786 Vigna mungo HOM05D007200 ORTHO05D009030 9.6e-93 344.4 247 69.2
FAN14G1797 Fragaria x ananassa HOM05D007200 ORTHO05D009030 1.6e-92 343.6 251 68.5
DCAR_001939 Daucus carota HOM05D007200 ORTHO05D009030 2.1e-92 343.2 288 62.2
Nitab4.5_0002420g0030 Nicotiana tabacum HOM05D007200 ORTHO05D009030 2.1e-92 343.2 266 63.9
CANSAT54G2021 Cannabis sativa HOM05D007200 ORTHO05D009030 3.7e-92 342.4 279 63.1
FvH4_6g06280 Fragaria vesca HOM05D007200 ORTHO05D009030 3.7e-92 342.4 251 68.5
Cfa006611 Carpinus fangiana HOM05D007200 ORTHO05D009030 8.2e-92 341.3 283 62.9
MD12G1216700 Malus domestica HOM05D007200 ORTHO05D009030 1.1e-91 340.9 299 60.9
Phvul.007G196200 Phaseolus vulgaris HOM05D007200 ORTHO05D009030 1.4e-91 340.5 254 65.4
CAN.G321.37 Capsicum annuum HOM05D007200 ORTHO05D009030 4.1e-91 339.0 247 66.8
Nn3g21404 Nelumbo nucifera HOM05D007200 ORTHO05D009030 6.9e-91 338.2 292 61.6
Solyc11g008480.2 Solanum lycopersicum HOM05D007200 ORTHO05D009030 2.0e-90 336.7 259 63.7
Sopen11g004260 Solanum pennellii HOM05D007200 ORTHO05D009030 7.6e-90 334.7 257 64.2
AUR62005175 Chenopodium quinoa HOM05D007200 ORTHO05D009030 1.0e-89 334.3 265 63.4
PGSC0003DMG400007427 Solanum tuberosum HOM05D007200 ORTHO05D009030 1.0e-89 334.3 267 63.3
AUR62000793 Chenopodium quinoa HOM05D007200 ORTHO05D009030 1.7e-89 333.6 272 62.9
Duzib177G0869 Durio zibethinus HOM05D007200 ORTHO05D009030 1.7e-89 333.6 288 60.4
TWI12G0470 Tripterygium wilfordii HOM05D007200 ORTHO05D009030 1.7e-89 333.6 282 60.3
PGR083G0889 Punica granatum HOM05D007200 ORTHO05D009030 2.9e-89 332.8 281 60.9
QL03p012758 Quercus lobata HOM05D007200 ORTHO05D009030 5.0e-89 332.0 288 61.1
FAN09G0829 Fragaria x ananassa HOM05D007200 ORTHO05D009030 8.4e-89 331.3 299 59.2
CARHR079750 Cardamine hirsuta HOM05D007200 ORTHO05D009030 1.1e-88 330.9 275 61.8
Thhalv10021289m.g Eutrema salsugineum HOM05D007200 ORTHO05D009030 1.1e-88 330.9 260 64.6
Medtr1g083110 Medicago truncatula HOM05D007200 ORTHO05D009030 1.4e-88 330.5 238 68.1
Prupe.6G323000 Prunus persica HOM05D007200 ORTHO05D009030 1.4e-88 330.5 291 60.8
COL.COLO4_10491 Corchorus olitorius HOM05D007200 ORTHO05D009030 1.9e-88 330.1 259 65.6
Lalb_Chr21g0310651 Lupinus albus HOM05D007200 ORTHO05D009030 1.9e-88 330.1 255 66.3
Gohir.A11G266300 Gossypium hirsutum HOM05D007200 ORTHO05D009030 2.5e-88 329.7 279 62.0
Thecc.05G310900 Theobroma cacao HOM05D007200 ORTHO05D009030 2.5e-88 329.7 288 61.1
Gohir.D11G276600 Gossypium hirsutum HOM05D007200 ORTHO05D009030 5.5e-88 328.6 279 61.6
Sp3g04270 Schrenkiella parvula HOM05D007200 ORTHO05D009030 5.5e-88 328.6 261 63.6
Carub.0003s0469 Capsella rubella HOM05D007200 ORTHO05D009030 1.2e-87 327.4 275 61.1
TPR.G6036 Trifolium pratense HOM05D007200 ORTHO05D009030 2.1e-87 326.6 280 60.0
AL3G15960 Arabidopsis lyrata HOM05D007200 ORTHO05D009030 2.7e-87 326.2 278 60.8
Gorai.007G298700 Gossypium raimondii HOM05D007200 ORTHO05D009030 2.7e-87 326.2 279 61.3
Psat6g149880 Pisum sativum HOM05D007200 ORTHO05D009030 2.7e-87 326.2 238 69.3
BraA05t23030Z Brassica rapa HOM05D007200 ORTHO05D009030 3.5e-87 325.9 270 61.9
BcaC05g30148 Brassica carinata HOM05D007200 ORTHO05D009030 4.6e-87 325.5 280 59.6
BolC5t34842H Brassica oleracea HOM05D007200 ORTHO05D000438 2.3e-86 323.2 270 61.5
CiPaw.07G020000 Carya illinoinensis HOM05D007200 ORTHO05D009030 3.9e-86 322.4 268 61.2
Aa31LG5G15970 Aethionema arabicum HOM05D007200 ORTHO05D009030 6.7e-86 321.6 260 62.3
Eucgr.B01933 Eucalyptus grandis HOM05D007200 ORTHO05D009030 6.7e-86 321.6 245 63.3
AT3G05410 Arabidopsis thaliana HOM05D007200 ORTHO05D009030 8.7e-86 321.2 260 63.1
Nitab4.5_0009303g0010 Nicotiana tabacum HOM05D007200 ORTHO05D009030 1.1e-85 320.9 266 61.7
BcaC05g30124 Brassica carinata HOM05D007200 ORTHO05D009030 1.9e-85 320.1 260 61.5
THA.LOC104818708 Tarenaya hassleriana HOM05D007200 ORTHO05D009030 4.3e-85 318.9 275 60.4
CsaV3_2G006520 Cucumis sativus L. HOM05D007200 ORTHO05D009030 2.2e-84 316.6 263 63.1
Lj5g0005198 Lotus japonicus HOM05D007200 ORTHO05D009030 3.7e-84 315.8 275 60.4
arahy.Tifrunner.gnm1.ann1.PH9A9F Arachis hypogaea HOM05D007200 ORTHO05D009030 4.8e-84 315.5 244 67.2
Cc02_g31060 Coffea canephora HOM05D007200 ORTHO05D009030 1.1e-83 314.3 246 66.3
vmacro19623 Vaccinium macrocarpon HOM05D007200 ORTHO05D009030 1.4e-83 313.9 259 63.3
arahy.Tifrunner.gnm1.ann1.H2XQXC Arachis hypogaea HOM05D007200 ORTHO05D009030 3.1e-83 312.8 244 66.8
Cpa.g.sc48.76 Carica papaya HOM05D007200 ORTHO05D009030 1.5e-82 310.5 286 57.0
EL10Ac4g09392 Beta vulgaris HOM05D007200 ORTHO05D009030 1.0e-81 307.8 285 56.1
MELO3C004233.2 Cucumis melo HOM05D007200 ORTHO05D009030 1.7e-81 307.0 266 61.7
FAN02G4393 Fragaria x ananassa HOM05D007200 ORTHO05D009030 2.9e-81 306.2 224 67.9
Sed0020284 Sechium edule HOM05D007200 ORTHO05D009030 2.9e-81 306.2 269 60.2
FAN05G3823 Fragaria x ananassa HOM05D000179 ORTHO05D009030 1.0e-78 297.7 222 68.5
Ah.04g160430 Amaranthus hybridus HOM05D007200 ORTHO05D009030 1.8e-78 297.0 265 58.1
MBI19_g12813_MAGBIO Magnolia biondii HOM05D007200 ORTHO05D009030 1.8e-78 297.0 225 68.0
PSO210G0998 Papaver somniferum HOM05D007200 ORTHO05D009030 3.9e-78 295.8 264 57.2
Zm00001eb142170 Zea mays HOM05D007200 ORTHO05D009030 1.1e-77 294.3 248 59.7
CDE02G3507 Ceratophyllum demersum HOM05D007200 ORTHO05D009030 4.1e-75 285.8 269 55.0
PSO832G2855 Papaver somniferum HOM05D007200 ORTHO05D009030 5.9e-74 282.0 239 60.3
ATR0706G032 Amborella trichopoda HOM05D007200 ORTHO05D009030 1.7e-73 280.4 246 56.5
CANSAT54G2778 Cannabis sativa HOM05D007200 ORTHO05D009030 2.2e-73 280.0 208 65.9
BcaC05g30126 Brassica carinata HOM05D007200 ORTHO05D009030 5.0e-73 278.9 258 56.6
ClCG02G015570 Citrullus lanatus HOM05D007200 ORTHO05D009030 1.9e-72 276.9 271 55.0
HPP92_006928 Vanilla planifolia HOM05D000065 ORTHO05D001606 1.3e-68 264.2 232 56.9
Potri.005G027100 Populus trichocarpa HOM05D007200 ORTHO05D009030 1.2e-66 257.7 224 62.5
SGA_v2.0_scaffold95G28806 Striga asiatica HOM05D007200 ORTHO05D009030 2.2e-60 236.9 162 77.2
Os01g0934400 Oryza sativa ssp. japonica HOM05D007200 ORTHO05D009030 1.5e-53 214.2 177 59.9
Pp3c2_22000 Physcomitrium patens HOM05D007200 ORTHO05D009030 5.7e-53 212.2 262 46.6
AagrBONN_evm.TU.Sc2ySwM_228.2760 Anthoceros agrestis HOM05D007200 ORTHO05D009030 7.5e-53 211.8 269 43.1
SMO140G0101 Selaginella moellendorffii HOM05D007200 ORTHO05D009030 3.1e-51 206.5 234 46.2
Hund07085 Selenicereus undatus HOM05D007200 ORTHO05D009030 3.8e-49 199.5 182 56.6
Sc16g0008540 Simmondsia chinensis HOM05D007200 ORTHO05D009030 8.5e-49 198.4 187 55.1
Mapoly0092s0016 Marchantia polymorpha HOM05D007200 ORTHO05D009030 7.2e-48 195.3 272 40.8
CBR_g32304 Chara braunii HOM05D007200 ORTHO05D009030 4.5e-42 176.0 269 38.7
AUR62004827 Chenopodium quinoa HOM05D007200 ORTHO05D009030 1.6e-39 167.5 166 53.6
PRCOL_00003141 Prasinoderma coloniale HOM05D007200 ORTHO05D009030 4.9e-36 156.0 254 40.9
Cre09.g389578 Chlamydomonas reinhardtii HOM05D007200 ORTHO05D009030 1.1e-35 154.8 265 38.5
MCO07G015 Micromonas commoda HOM05D007200 ORTHO05D009030 5.4e-35 152.5 240 38.3
Oeu012109.1 Olea europaea HOM05D007200 ORTHO05D009030 4.6e-34 149.4 101 72.3
Actinidia19786 Actinidia chinensis HOM05D007200 ORTHO05D009030 2.2e-28 130.6 105 61.9
C05p61820 Brassica napus HOM05D000205 ORTHO05D000438 1.9e-19 100.9 158 43.0
MD04G1202900 Malus domestica HOM05D007200 ORTHO05D009030 5.4e-19 99.4 120 50.8
Os01g0934350 Oryza sativa ssp. japonica HOM05D007200 ORTHO05D009030 1.2e-15 88.2 78 52.6
AUR62032114 Chenopodium quinoa HOM05D002933 ORTHO05D007742 1.1e-11 75.1 230 24.3
AUR62039657 Chenopodium quinoa HOM05D002933 ORTHO05D007742 1.4e-11 74.7 228 24.1
Ah.11g047550 Amaranthus hybridus HOM05D006809 ORTHO05D008609 5.4e-11 72.8 235 23.0
EL10Ac5g11164 Beta vulgaris HOM05D002933 ORTHO05D007742 7.1e-11 72.4 228 24.1
Hund02566 Selenicereus undatus HOM05D002933 ORTHO05D007742 1.3e-09 68.2 234 24.8
Aa31LG10G10340 Aethionema arabicum HOM05D002933 ORTHO05D007742 3.0e-09 67.0 184 24.5
PSO135G0212 Papaver somniferum HOM05D002933 ORTHO05D007742 3.9e-09 66.6 184 24.5
CAN.G1228.6 Capsicum annuum HOM05D002933 ORTHO05D007742 5.1e-09 66.2 184 26.1
PSO384G2709 Papaver somniferum HOM05D002933 ORTHO05D007742 5.1e-09 66.2 184 24.5
Solyc03g114930.3 Solanum lycopersicum HOM05D002933 ORTHO05D007742 2.5e-08 63.9 184 26.1
Sopen03g034010 Solanum pennellii HOM05D002933 ORTHO05D007742 2.5e-08 63.9 184 26.1
PGSC0003DMG400024531 Solanum tuberosum HOM05D002933 ORTHO05D007742 2.5e-08 63.9 184 25.0
Oeu057202.1 Olea europaea HOM05D002933 ORTHO05D007742 3.3e-08 63.5 115 31.3
TAR636G1208 Trochodendron aralioides HOM05D002933 ORTHO05D007742 1.2e-07 61.6 115 29.6
Hma1.2p1_0060F.1_g032910 Hydrangea macrophylla HOM05D002933 ORTHO05D007742 3.6e-07 60.1 115 28.7
BcaC02g09745 Brassica carinata HOM05D002933 ORTHO05D007742 4.7e-07 59.7 115 30.4
BolC4t25275H Brassica oleracea HOM05D002933 ORTHO05D007742 4.7e-07 59.7 115 30.4
Thhalv10010685m.g Eutrema salsugineum HOM05D002933 ORTHO05D007742 4.7e-07 59.7 115 30.4
A04p04610 Brassica napus HOM05D002933 ORTHO05D007742 8.1e-07 58.9 115 30.4
BraA04t16171Z Brassica rapa HOM05D002933 ORTHO05D007742 8.1e-07 58.9 115 30.4
BcaB02g08429 Brassica carinata HOM05D002933 ORTHO05D007742 1.4e-06 58.2 115 29.6
CSS0020461 Camellia sinensis var. sinensis HOM05D002933 ORTHO05D007742 1.4e-06 58.2 115 27.8
CSS0042513 Camellia sinensis var. sinensis HOM05D002933 ORTHO05D007742 1.4e-06 58.2 115 27.8
Carub.0005s2198 Capsella rubella HOM05D002933 ORTHO05D007742 1.4e-06 58.2 115 28.7
HanXRQChr07g0200961 Helianthus annuus HOM05D002933 ORTHO05D009221 1.8e-06 57.8 233 24.9
AL5G36450 Arabidopsis lyrata HOM05D002933 ORTHO05D007742 2.4e-06 57.4 115 28.7
AT3G55330 Arabidopsis thaliana HOM05D002933 ORTHO05D007742 4.0e-06 56.6 115 28.7
Nn4g25453 Nelumbo nucifera HOM05D006608 ORTHO05D008316 4.0e-06 56.6 194 26.3
CARHR165310 Cardamine hirsuta HOM05D002933 ORTHO05D007742 5.2e-06 56.2 115 28.7
unitig_52.g17502 Utricularia gibba HOM05D002933 ORTHO05D007742 6.8e-06 55.8 115 30.4


User provided reference genes

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