Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 1.1e-245 852.8 424 100.0
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 1.2e-215 753.1 462 81.2
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 8.0e-212 740.3 484 77.5
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 5.2e-211 737.6 462 81.0
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 1.2e-207 726.5 459 79.1
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 5.9e-207 724.2 512 73.0
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 3.9e-206 721.5 459 78.0
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 8.6e-206 720.3 459 77.6
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 1.1e-205 719.9 462 77.3
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 1.2e-204 716.5 460 77.4
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 8.0e-204 713.8 461 77.0
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 2.3e-203 712.2 459 76.9
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 3.1e-203 711.8 459 76.9
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 3.1e-203 711.8 459 76.7
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 8.9e-203 710.3 459 76.3
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 1.2e-202 709.9 459 76.0
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 1.2e-202 709.9 459 76.7
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 2.0e-202 709.1 459 76.3
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 2.6e-202 708.8 475 74.7
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 4.4e-202 708.0 459 76.3
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 7.5e-202 707.2 459 76.9
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 9.8e-202 706.8 459 75.4
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 1.3e-201 706.4 459 76.5
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 2.9e-201 705.3 459 76.0
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 3.7e-201 704.9 459 75.4
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 3.7e-201 704.9 460 76.5
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 4.9e-201 704.5 458 75.5
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 4.9e-201 704.5 461 75.1
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 1.1e-200 703.4 459 75.2
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 1.1e-200 703.4 459 75.8
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 1.9e-200 702.6 463 76.2
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 1.9e-200 702.6 460 76.1
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 4.1e-200 701.4 476 74.2
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 5.4e-200 701.0 423 81.3
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 7.0e-200 700.7 459 74.7
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.6e-199 699.5 459 76.0
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 1.6e-199 699.5 459 75.2
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 4.6e-199 698.0 460 74.8
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 4.6e-199 698.0 460 75.0
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 7.8e-199 697.2 459 75.2
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 2.3e-198 695.7 459 74.9
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 3.0e-198 695.3 459 74.9
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 3.9e-198 694.9 459 74.9
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 5.0e-198 694.5 485 73.2
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 6.6e-198 694.1 460 73.3
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 6.6e-198 694.1 459 74.3
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 1.5e-197 693.0 459 74.7
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 1.9e-197 692.6 459 74.5
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 1.9e-197 692.6 459 75.6
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 1.9e-197 692.6 459 74.7
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 1.9e-197 692.6 461 74.0
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 3.3e-197 691.8 459 74.5
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 4.3e-197 691.4 462 74.0
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 4.3e-197 691.4 461 73.5
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 4.3e-197 691.4 459 74.3
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 5.6e-197 691.0 459 73.9
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 9.5e-197 690.3 460 73.0
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 1.6e-196 689.5 459 74.9
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 4.7e-196 688.0 460 72.8
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 4.7e-196 688.0 460 72.6
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 4.7e-196 688.0 460 73.0
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 6.2e-196 687.6 460 72.8
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 6.2e-196 687.6 479 72.9
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 8.1e-196 687.2 493 70.0
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 1.1e-195 686.8 460 72.4
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 1.4e-195 686.4 460 72.4
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.4e-195 686.4 493 70.2
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 1.8e-195 686.0 461 73.1
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 1.8e-195 686.0 459 72.8
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 5.2e-195 684.5 460 72.8
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 1.2e-194 683.3 461 74.2
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 1.5e-194 682.9 460 72.4
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 2.6e-194 682.2 457 73.7
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 3.4e-194 681.8 460 72.2
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 3.4e-194 681.8 461 74.0
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 3.4e-194 681.8 461 74.0
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 5.8e-194 681.0 460 72.2
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 5.8e-194 681.0 459 72.3
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 1.7e-193 679.5 460 71.7
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 1.7e-193 679.5 460 73.3
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 2.9e-193 678.7 459 72.1
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 6.4e-193 677.6 482 69.7
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 6.4e-193 677.6 459 72.5
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 8.3e-193 677.2 459 72.8
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 8.3e-193 677.2 459 73.2
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 1.4e-192 676.4 459 72.5
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 1.4e-192 676.4 460 72.0
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 2.4e-192 675.6 459 73.0
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 2.4e-192 675.6 459 72.1
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 9.2e-192 673.7 459 72.1
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 1.2e-191 673.3 461 72.0
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 3.5e-191 671.8 461 71.6
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 3.0e-190 668.7 459 71.5
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 8.6e-190 667.2 459 71.5
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 1.5e-189 666.4 459 71.2
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 3.3e-189 665.2 459 71.2
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 5.6e-189 664.5 509 67.0
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 9.5e-189 663.7 477 68.8
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 4.7e-188 661.4 461 71.1
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 1.8e-187 659.4 459 72.3
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 3.1e-187 658.7 494 67.0
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 7.8e-183 644.0 457 69.6
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 5.6e-181 637.9 416 77.2
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 1.3e-177 626.7 460 67.6
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 8.4e-177 624.0 465 67.5
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 4.6e-175 618.2 458 65.7
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 1.3e-172 610.1 460 65.9
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 8.1e-172 607.4 459 65.6
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 2.0e-170 602.8 457 64.8
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 2.2e-169 599.4 410 71.5
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 3.8e-169 598.6 378 80.2
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 8.4e-169 597.4 459 65.6
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 1.3e-166 590.1 382 77.5
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 1.8e-166 589.7 382 77.5
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 1.1e-165 587.0 429 68.5
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 1.3e-164 583.6 375 78.7
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 3.1e-163 578.9 455 65.1
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 6.9e-163 577.8 462 66.5
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 9.9e-162 573.9 453 64.7
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 7.1e-160 567.8 460 64.6
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 4.3e-157 558.5 373 74.0
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 2.8e-156 555.8 373 72.9
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 3.1e-155 552.4 711 46.3
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 6.9e-155 551.2 430 66.5
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 3.9e-150 535.4 453 57.6
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 6.7e-150 534.6 426 63.8
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 2.8e-148 529.3 453 60.9
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 2.4e-147 526.2 382 71.7
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 3.4e-138 495.7 323 77.4
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 3.2e-112 409.5 237 84.4
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 6.6e-97 358.6 317 60.3
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 8.3e-92 341.7 252 70.2
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 6.0e-90 335.5 187 85.6
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 5.0e-89 332.4 275 60.7
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 1.7e-84 317.4 230 72.2
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 1.6e-82 310.8 449 38.5
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 2.2e-76 290.4 460 37.8
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 1.0e-73 281.6 452 35.6
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 2.3e-65 253.8 200 65.5
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 3.9e-65 253.1 360 42.2
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 2.2e-60 237.3 131 85.5
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 2.2e-60 237.3 138 82.6
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 4.9e-52 209.5 165 66.7
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 1.8e-49 201.1 170 59.4
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 1.5e-48 198.0 196 55.6
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 3.8e-44 183.3 98 88.8
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 5.1e-41 172.9 251 41.8
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 5.1e-41 172.9 130 60.8
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 8.2e-39 165.6 121 62.8
Psat6g188720 Pisum sativum HOM05D001289 ORTHO05D005641 1.1e-32 145.2 137 54.0
PSO349G0016 Papaver somniferum HOM05D004194 ORTHO05D005641 2.2e-31 141.0 80 83.8
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 7.7e-29 132.5 372 27.2
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 6.5e-28 129.4 74 83.8
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 5.5e-27 126.3 202 36.1
VMungo0331G0568 Vigna mungo HOM05D004194 ORTHO05D007986 6.1e-26 122.9 100 60.0
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 6.7e-25 119.4 100 59.0
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 2.4e-22 110.9 268 28.7
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 1.1e-19 102.1 50 94.0
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 1.9e-19 101.3 52 86.5
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 1.9e-11 74.7 41 78.0
BcaNung01906 Brassica carinata HOM05D004194 ORTHO05D005641 4.2e-11 73.6 56 53.6
RcHm_v2.0_Chr6g0244231 Rosa chinensis HOM05D004194 ORTHO05D341107 4.2e-11 73.6 57 66.7
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 9.4e-11 72.4 47 68.1
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 9.4e-11 72.4 43 72.1
Psat3g096720 Pisum sativum HOM05D004194 ORTHO05D324018 1.1e-06 58.9 35 71.4
Psat5g254960 Pisum sativum HOM05D015311 ORTHO05D321322 3.1e-06 57.4 38 73.7


User provided reference genes

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