Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N01206 Erythranthe guttata HOM05D004811 ORTHO05D006888 0.0e+00 1446.8 754 100.0
MSTRG.5372 Avicennia marina HOM05D004811 ORTHO05D006888 0.0e+00 1179.9 759 79.7
Oeu013671.1 Olea europaea HOM05D004811 ORTHO05D006888 0.0e+00 1090.5 753 74.0
Sopen10g022210 Solanum pennellii HOM05D004811 ORTHO05D006888 2.0e-306 1055.4 741 72.5
Dinv04542 Davidia involucrata HOM05D004811 ORTHO05D006888 9.9e-306 1053.1 751 71.2
Solyc10g050540.2 Solanum lycopersicum HOM05D004811 ORTHO05D006888 1.3e-305 1052.7 741 72.3
CSS0026504 Camellia sinensis var. sinensis HOM05D004811 ORTHO05D006888 2.9e-305 1051.6 722 73.3
Cc02_g18400 Coffea canephora HOM05D004811 ORTHO05D006888 1.9e-304 1048.9 738 70.7
Rhsim11G0174100 Rhododendron simsii HOM05D004811 ORTHO05D006888 1.8e-302 1042.3 755 70.2
Lj5C205G23 Lonicera japonica HOM05D004811 ORTHO05D006888 3.1e-299 1031.6 768 69.9
Cfa018260 Carpinus fangiana HOM05D004811 ORTHO05D006888 4.5e-298 1027.7 762 68.6
vmacro10447 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 7.6e-298 1026.9 759 69.7
GSVIVG01032296001 Vitis vinifera HOM05D004811 ORTHO05D006888 2.2e-297 1025.4 775 67.1
TWI18G0824 Tripterygium wilfordii HOM05D004811 ORTHO05D006888 4.6e-295 1017.7 758 68.6
CiPaw.16G007200 Carya illinoinensis HOM05D004811 ORTHO05D006888 1.3e-294 1016.1 763 68.0
TAR636G1158 Trochodendron aralioides HOM05D004811 ORTHO05D006888 2.8e-292 1008.4 763 68.3
Atru.chr1.2074 Acer truncatum HOM05D004811 ORTHO05D006888 1.2e-290 1003.0 756 66.9
Nn4g25146 Nelumbo nucifera HOM05D004811 ORTHO05D006888 7.6e-290 1000.3 766 66.4
Peaxi162Scf00003g01938 Petunia axillaris HOM05D004811 ORTHO05D006888 1.7e-289 999.2 739 69.1
RcHm_v2.0_Chr7g0218051 Rosa chinensis HOM05D004811 ORTHO05D006888 1.7e-289 999.2 754 68.0
PSO339G3970 Papaver somniferum HOM05D004811 ORTHO05D006888 1.6e-287 992.6 759 67.3
Prupe.1G353000 Prunus persica HOM05D004811 ORTHO05D006888 1.6e-287 992.6 751 67.5
Psat1g085480 Pisum sativum HOM05D004811 ORTHO05D006888 3.6e-287 991.5 749 67.6
Manes.14G160925 Manihot esculenta HOM05D004811 ORTHO05D006888 4.6e-287 991.1 755 67.3
Ca_04451_v3 Cicer arietinum L. HOM05D004811 ORTHO05D006888 1.0e-286 989.9 750 67.7
FvH4_5g27050 Fragaria vesca HOM05D004811 ORTHO05D006888 1.4e-286 989.6 747 67.9
MBI19_g06604_MAGBIO Magnolia biondii HOM05D004811 ORTHO05D006888 1.4e-286 989.6 757 67.0
PGR044G1247 Punica granatum HOM05D004811 ORTHO05D006888 1.1e-285 986.5 758 68.2
Ah.02g115100 Amaranthus hybridus HOM05D004811 ORTHO05D006888 7.4e-285 983.8 757 66.2
VMungo0464G0703 Vigna mungo HOM05D004811 ORTHO05D006888 3.7e-284 981.5 766 66.3
arahy.Tifrunner.gnm1.ann1.21VBB5 Arachis hypogaea HOM05D004811 ORTHO05D006888 1.1e-283 979.9 764 65.6
Phvul.004G051000 Phaseolus vulgaris HOM05D004811 ORTHO05D006888 1.1e-283 979.9 760 66.6
COL.COLO4_04346 Corchorus olitorius HOM05D004811 ORTHO05D006888 1.8e-283 979.2 753 66.7
Glyma.19G064500 Glycine max HOM05D004811 ORTHO05D006888 2.4e-283 978.8 771 65.8
ECA240G1163 Erigeron canadensis HOM05D004811 ORTHO05D006888 1.2e-282 976.5 730 68.4
Thecc.10G126600 Theobroma cacao HOM05D004811 ORTHO05D006888 1.5e-282 976.1 754 65.5
Potri.003G106200 Populus trichocarpa HOM05D004811 ORTHO05D006888 4.5e-282 974.5 749 67.7
Duzib106G1219 Durio zibethinus HOM05D004811 ORTHO05D006888 5.9e-282 974.2 767 65.1
arahy.Tifrunner.gnm1.ann1.BVJW9Q Arachis hypogaea HOM05D004811 ORTHO05D006888 1.7e-281 972.6 784 64.3
FAN18G4560 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.7e-281 972.6 754 67.0
FAN04G3268 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.9e-280 969.1 773 65.8
Eucgr.K03557 Eucalyptus grandis HOM05D004811 ORTHO05D006888 4.2e-280 968.0 756 66.5
Lalb_Chr06g0174221 Lupinus albus HOM05D004811 ORTHO05D006888 5.5e-280 967.6 757 66.2
CsaV3_4G031660 Cucumis sativus L. HOM05D004811 ORTHO05D006888 4.7e-279 964.5 748 65.0
HanXRQChr03g0072161 Helianthus annuus HOM05D004811 ORTHO05D006888 3.3e-277 958.4 753 66.5
Medtr6g026900 Medicago truncatula HOM05D004811 ORTHO05D006888 1.7e-276 956.1 749 66.2
FAN08G1445 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.1e-275 953.4 799 63.5
Gorai.N006700 Gossypium raimondii HOM05D004811 ORTHO05D006888 1.8e-275 952.6 768 63.5
Lj2g0018835 Lotus japonicus HOM05D004811 ORTHO05D006888 5.3e-275 951.0 758 64.5
Gohir.D06G178500 Gossypium hirsutum HOM05D004811 ORTHO05D006888 9.1e-275 950.3 768 63.4
Ciclev10011123m.g Citrus clementina HOM05D004811 ORTHO05D006888 1.2e-274 949.9 778 63.5
PSO384G3007 Papaver somniferum HOM05D004811 ORTHO05D006888 1.2e-274 949.9 760 65.0
Lsat_1_v5_gn_9_108940 Lactuca sativa HOM05D004811 ORTHO05D006888 4.2e-272 941.4 755 65.7
Nitab4.5_0000876g0200 Nicotiana tabacum HOM05D004811 ORTHO05D006888 1.6e-271 939.5 739 67.0
ATR0307G027 Amborella trichopoda HOM05D004811 ORTHO05D006888 4.7e-271 937.9 761 65.0
Sed0008285 Sechium edule HOM05D004811 ORTHO05D006888 1.1e-269 933.3 749 62.8
vmacro02132 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 3.1e-267 925.2 762 64.4
Aqoxy1G00017 Aquilegia oxysepala HOM05D004811 ORTHO05D006888 2.0e-266 922.5 761 63.3
Gohir.A06G170700 Gossypium hirsutum HOM05D004811 ORTHO05D006888 6.5e-265 917.5 766 61.7
EL10Ac5g11622 Beta vulgaris HOM05D004811 ORTHO05D006888 7.2e-264 914.1 751 63.2
THA.LOC104812205 Tarenaya hassleriana HOM05D004811 ORTHO05D006888 1.0e-262 910.2 751 62.6
Haze_17837 Corylus avellana HOM05D004811 ORTHO05D006888 8.8e-262 907.1 765 63.3
Haze_17831 Corylus avellana HOM05D004811 ORTHO05D006888 3.3e-261 905.2 765 63.1
SGA_v2.0_scaffold55G19835 Striga asiatica HOM05D004811 ORTHO05D006888 5.7e-261 904.4 652 71.5
QL02p036870 Quercus lobata HOM05D004811 ORTHO05D006888 9.1e-259 897.1 519 81.5
QL02p036407 Quercus lobata HOM05D004811 ORTHO05D006888 2.0e-258 896.0 510 82.7
Carub.0001s1749 Capsella rubella HOM05D004811 ORTHO05D006888 4.5e-258 894.8 749 62.9
Os12g0571900 Oryza sativa ssp. japonica HOM05D004811 ORTHO05D006888 1.0e-257 893.6 753 60.8
A08p30750 Brassica napus HOM05D004811 ORTHO05D006888 5.0e-257 891.3 750 61.5
AL1G30120 Arabidopsis lyrata HOM05D004811 ORTHO05D006888 6.5e-257 891.0 749 61.9
C08p18170 Brassica napus HOM05D004811 ORTHO05D006888 3.2e-256 888.6 751 61.1
BolC8t49451H Brassica oleracea HOM05D004811 ORTHO05D006888 3.2e-256 888.6 751 61.1
Sp1g15840 Schrenkiella parvula HOM05D004811 ORTHO05D006888 3.2e-256 888.6 750 62.3
Sc16g0003300 Simmondsia chinensis HOM05D004811 ORTHO05D006888 1.2e-255 886.7 758 61.3
Aa31LG10G8540 Aethionema arabicum HOM05D004811 ORTHO05D006888 1.5e-253 879.8 750 62.1
AT1G17760 Arabidopsis thaliana HOM05D004811 ORTHO05D006888 2.6e-253 879.0 751 61.5
BraA08t35006Z Brassica rapa HOM05D004811 ORTHO05D006888 3.4e-253 878.6 774 59.6
CARHR018370 Cardamine hirsuta HOM05D004811 ORTHO05D006888 2.2e-252 875.9 752 63.7
Thhalv10006915m.g Eutrema salsugineum HOM05D004811 ORTHO05D006888 6.3e-252 874.4 752 63.2
MELO3C008873.2 Cucumis melo HOM05D004811 ORTHO05D006888 1.7e-249 866.3 733 61.0
MD09G1000100 Malus domestica HOM05D004811 ORTHO05D006888 2.3e-249 865.9 525 78.5
BcaC07g38890 Brassica carinata HOM05D004811 ORTHO05D006888 2.3e-246 855.9 674 64.2
PSO210G4088 Papaver somniferum HOM05D004811 ORTHO05D006888 3.4e-245 852.0 736 60.1
PSO210G7430 Papaver somniferum HOM05D004811 ORTHO05D006888 5.7e-245 851.3 743 59.6
PSO210G5098 Papaver somniferum HOM05D004811 ORTHO05D006888 6.3e-244 847.8 753 59.5
CDE09G0881 Ceratophyllum demersum HOM05D004811 ORTHO05D006888 3.5e-242 842.0 667 63.9
Sabra03G0073000 Salix brachista HOM05D004811 ORTHO05D006888 8.6e-241 837.4 936 52.1
HPP92_012441 Vanilla planifolia HOM05D004811 ORTHO05D006888 5.6e-240 834.7 754 59.2
DCAR_022066 Daucus carota HOM05D004811 ORTHO05D006888 8.0e-239 830.9 755 60.0
ClCG04G004820 Citrullus lanatus HOM05D004811 ORTHO05D006888 6.4e-236 821.2 676 62.9
FAN13G1880 Fragaria x ananassa HOM05D004811 ORTHO05D006888 3.0e-225 785.8 631 65.6
Mapoly0001s0525 Marchantia polymorpha HOM05D004811 ORTHO05D006888 4.0e-222 775.4 807 53.0
AUR62037093 Chenopodium quinoa HOM05D004811 ORTHO05D006888 1.3e-220 770.4 770 54.9
SEGI_25586 Sequoiadendron giganteum HOM05D004811 ORTHO05D006888 5.1e-217 758.4 758 54.4
Psat2g043000 Pisum sativum HOM05D004811 ORTHO05D006888 5.6e-216 755.0 735 56.5
Actinidia00514 Actinidia chinensis HOM05D004811 ORTHO05D006888 9.5e-216 754.2 752 56.8
AUR62036481 Chenopodium quinoa HOM05D004811 ORTHO05D006888 3.8e-212 742.3 760 53.9
Pp3c3_19050 Physcomitrium patens HOM05D004811 ORTHO05D006888 7.1e-211 738.0 832 49.5
SMO356G0171 Selaginella moellendorffii HOM05D004811 ORTHO05D006888 3.3e-208 729.2 745 50.3
unitig_8.g3575 Utricularia gibba HOM05D004811 ORTHO05D006888 9.3e-203 711.1 759 55.5
RcHm_v2.0_Chr2g0146051 Rosa chinensis HOM05D004811 ORTHO05D006888 2.0e-197 693.3 746 52.1
CBR_g19801 Chara braunii HOM05D004811 ORTHO05D006888 1.0e-193 681.0 779 47.4
FvH4_6g34990 Fragaria vesca HOM05D004811 ORTHO05D006888 2.1e-191 673.3 742 50.8
AagrBONN_evm.TU.Sc2ySwM_362.2211 Anthoceros agrestis HOM05D004811 ORTHO05D006888 4.0e-190 669.1 637 54.0
FAN05G0989 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.2e-189 667.5 740 50.4
FAN09G3976 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.4e-187 660.6 736 50.4
FAN14G1986 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.4e-187 660.6 742 50.1
Cpa.g.sc111.49 Carica papaya HOM05D004811 ORTHO05D006888 1.7e-164 583.9 335 81.5
Nitab4.5_0016907g0010 Nicotiana tabacum HOM05D004811 ORTHO05D006888 1.3e-143 514.6 443 63.4
HPP92_028180 Vanilla planifolia HOM05D004811 ORTHO05D006888 1.7e-124 451.1 414 56.5
Zm00001eb287160 Zea mays HOM05D004811 ORTHO05D006888 1.5e-107 394.8 442 52.0
CAN.G606.11 Capsicum annuum HOM05D004811 ORTHO05D006888 2.2e-103 380.9 246 76.4
Hund15153 Selenicereus undatus HOM05D004811 ORTHO05D006888 4.9e-103 379.8 217 80.6
MCO07G203 Micromonas commoda HOM05D004811 ORTHO05D006888 7.8e-93 345.9 727 32.3
PRCOL_00007255 Prasinoderma coloniale HOM05D004811 ORTHO05D006888 5.1e-92 343.2 686 34.4
CAN.G606.10 Capsicum annuum HOM05D004811 ORTHO05D006888 1.8e-89 334.7 182 86.8
Cre12.g506050 Chlamydomonas reinhardtii HOM05D004811 ORTHO05D006888 7.9e-77 292.7 702 30.8
CAN.G606.9 Capsicum annuum HOM05D004811 ORTHO05D006888 4.6e-61 240.4 354 45.2
Nitab4.5_0009440g0010 Nicotiana tabacum HOM05D004811 ORTHO05D006888 1.1e-59 235.7 135 80.7
HPP92_028179 Vanilla planifolia HOM05D004811 ORTHO05D006888 3.1e-57 227.6 168 69.6
Actinidia09194 Actinidia chinensis HOM05D004811 ORTHO05D006888 9.7e-51 206.1 121 81.8
Sed0006977 Sechium edule HOM05D004811 ORTHO05D006888 1.4e-46 192.2 138 66.7
TPR.G33000 Trifolium pratense HOM05D004811 ORTHO05D006888 7.9e-45 186.4 107 78.5
Sed0024483 Sechium edule HOM05D004811 ORTHO05D006888 4.5e-40 170.6 279 39.8
QL02p036387 Quercus lobata HOM05D004811 ORTHO05D006888 2.5e-30 138.3 240 43.3
QL02p036851 Quercus lobata HOM05D004811 ORTHO05D006888 3.2e-30 137.9 240 43.3
Actinidia09197 Actinidia chinensis HOM05D004811 ORTHO05D006888 1.5e-27 129.0 148 49.3
TPR.G39924 Trifolium pratense HOM05D004811 ORTHO05D006888 7.0e-25 120.2 217 41.5
Cpa.g.sc111.48 Carica papaya HOM05D004811 ORTHO05D006888 2.2e-23 115.2 92 62.0
SalBow3G0991 Salvia bowleyana HOM05D004811 ORTHO05D006888 6.1e-21 107.1 83 69.9
SGA_v2.0_scaffold753G53552 Striga asiatica HOM05D004811 ORTHO05D006888 1.3e-18 99.4 119 52.9
Thhalv10029084m.g Eutrema salsugineum HOM05D004811 ORTHO05D006888 3.5e-16 91.3 66 66.7
Actinidia09195 Actinidia chinensis HOM05D004811 ORTHO05D006888 4.5e-16 90.9 55 72.7
Cpa.g.sc111.45 Carica papaya HOM05D004811 ORTHO05D006888 9.5e-14 83.2 183 37.2
Actinidia09206 Actinidia chinensis HOM05D004811 ORTHO05D009793 1.2e-13 82.8 148 39.2
Mapoly0104s0010 Marchantia polymorpha HOM05D002279 ORTHO05D002644 2.1e-13 82.0 554 20.0
Lalb_Chr18g0061161 Lupinus albus HOM05D005319 ORTHO05D006632 2.8e-13 81.6 476 21.4
TWI59G0928 Tripterygium wilfordii HOM05D005319 ORTHO05D006632 3.0e-12 78.2 508 19.9
Hund15156 Selenicereus undatus HOM05D004811 ORTHO05D006888 5.2e-12 77.4 154 36.4
Eucgr.K01429 Eucalyptus grandis HOM05D002279 ORTHO05D002644 8.9e-12 76.6 405 23.7
EL10Ac8g19790 Beta vulgaris HOM05D002279 ORTHO05D002644 2.4e-09 68.6 422 22.7
HPP92_021812 Vanilla planifolia HOM05D002279 ORTHO05D002644 7.0e-09 67.0 512 21.5
Zm00001eb007090 Zea mays HOM05D002279 ORTHO05D002644 1.6e-08 65.9 540 22.8
PSO541G4576 Papaver somniferum HOM05D000002 ORTHO05D000001 5.0e-07 60.8 59 50.8
Os03g0210400 Oryza sativa ssp. japonica HOM05D002279 ORTHO05D002644 1.1e-06 59.7 339 21.8
Pp3c1_10210 Physcomitrium patens HOM05D003219 ORTHO05D005190 1.9e-06 58.9 209 25.8
Nitab4.5_0005198g0010 Nicotiana tabacum HOM05D003219 ORTHO05D005190 7.3e-06 57.0 218 23.9
CsaV3_6G049830 Cucumis sativus L. HOM05D003219 ORTHO05D005190 9.5e-06 56.6 218 23.4
Sed0027994 Sechium edule HOM05D003219 ORTHO05D005190 9.5e-06 56.6 218 23.4


User provided reference genes

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