Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N00575 Erythranthe guttata HOM05D005190 ORTHO05D006183 5.7e-69 264.2 143 100.0
MSTRG.12184 Avicennia marina HOM05D005190 ORTHO05D006183 5.9e-58 227.6 143 79.0
SGA_v2.0_scaffold36G14289 Striga asiatica HOM05D005190 ORTHO05D006183 2.2e-57 225.7 143 79.0
Oeu009981.1 Olea europaea HOM05D005190 ORTHO05D006183 5.0e-57 224.6 143 79.0
Duzib235G0490 Durio zibethinus HOM05D005190 ORTHO05D006183 4.7e-55 218.0 143 76.2
SGA_v2.0_scaffold198G41066 Striga asiatica HOM05D005190 ORTHO05D006183 4.7e-55 218.0 143 78.3
SalBow4G3050 Salvia bowleyana HOM05D005190 ORTHO05D006183 1.4e-54 216.5 143 76.2
Dinv09552 Davidia involucrata HOM05D005190 ORTHO05D006183 4.0e-54 214.9 143 73.4
Dinv10386 Davidia involucrata HOM05D005190 ORTHO05D006183 4.0e-54 214.9 143 73.4
Gohir.A06G195300 Gossypium hirsutum HOM05D005190 ORTHO05D006183 4.0e-54 214.9 143 76.2
Gohir.D06G202900 Gossypium hirsutum HOM05D005190 ORTHO05D006183 1.2e-53 213.4 143 75.5
Gorai.010G236800 Gossypium raimondii HOM05D005190 ORTHO05D006183 1.2e-53 213.4 143 75.5
CiPaw.01G130900 Carya illinoinensis HOM05D005190 ORTHO05D006183 1.5e-53 213.0 140 75.7
PGR044G0309 Punica granatum HOM05D005190 ORTHO05D006183 2.6e-53 212.2 143 74.8
CSS0027522 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 3.3e-53 211.8 143 72.0
CSS0047604 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 3.3e-53 211.8 143 72.0
Cfa006455 Carpinus fangiana HOM05D005190 ORTHO05D006183 4.4e-53 211.5 140 75.0
Potri.012G045500 Populus trichocarpa HOM05D005190 ORTHO05D006183 4.4e-53 211.5 143 74.1
Thecc.06G136600 Theobroma cacao HOM05D005190 ORTHO05D006183 5.7e-53 211.1 143 74.1
Actinidia01056 Actinidia chinensis HOM05D005190 ORTHO05D006183 3.7e-52 208.4 143 71.3
Haze_00795 Corylus avellana HOM05D005582 ORTHO05D007028 3.7e-52 208.4 140 74.3
GSVIVG01017663001 Vitis vinifera HOM05D005190 ORTHO05D006183 3.7e-52 208.4 143 71.3
DCAR_006510 Daucus carota HOM05D005190 ORTHO05D006183 4.8e-52 208.0 143 70.6
QL06p013825 Quercus lobata HOM05D005190 ORTHO05D006183 4.8e-52 208.0 142 71.1
TWI38G0007 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 4.8e-52 208.0 143 72.0
COL.COLO4_30940 Corchorus olitorius HOM05D005190 ORTHO05D006183 6.3e-52 207.6 151 71.5
TAR629G3462 Trochodendron aralioides HOM05D005190 ORTHO05D006183 6.3e-52 207.6 143 70.6
Hma1.2p1_0013F.1_g007820 Hydrangea macrophylla HOM05D005190 ORTHO05D006183 8.2e-52 207.2 143 72.0
Rhsim04G0247000 Rhododendron simsii HOM05D005190 ORTHO05D006183 8.2e-52 207.2 143 70.6
GSVIVG01017602001 Vitis vinifera HOM05D005190 ORTHO05D006183 8.2e-52 207.2 143 71.3
Sabra15G0031200 Salix brachista HOM05D005190 ORTHO05D006183 1.1e-51 206.8 143 72.0
Sed0026997 Sechium edule HOM05D005190 ORTHO05D006183 1.1e-51 206.8 143 69.9
Cc07_g19070 Coffea canephora HOM05D005190 ORTHO05D006183 2.4e-51 205.7 143 71.3
Nn3g18945 Nelumbo nucifera HOM05D005190 ORTHO05D006183 3.1e-51 205.3 143 69.9
Potri.015G036700 Populus trichocarpa HOM05D005190 ORTHO05D006183 3.1e-51 205.3 143 72.0
MELO3C006747.2 Cucumis melo HOM05D005190 ORTHO05D006183 4.1e-51 204.9 143 72.7
CANSAT35G0272 Cannabis sativa HOM05D005190 ORTHO05D006183 7.0e-51 204.1 143 70.6
Prupe.8G102200 Prunus persica HOM05D005190 ORTHO05D006183 7.0e-51 204.1 143 71.3
CsaV3_4G025830 Cucumis sativus L. HOM05D005190 ORTHO05D006183 1.2e-50 203.4 143 71.3
Ciclev10006189m.g Citrus clementina HOM05D005190 ORTHO05D006183 1.6e-50 203.0 143 71.3
CsaV3_3G015480 Cucumis sativus L. HOM05D005190 ORTHO05D006183 2.0e-50 202.6 143 71.3
Peaxi162Scf00074g00538 Petunia axillaris HOM05D005190 ORTHO05D006183 5.9e-50 201.1 143 71.3
TPR.G12566 Trifolium pratense HOM05D005190 ORTHO05D006183 5.9e-50 201.1 144 70.1
Cpa.g.sc146.40 Carica papaya HOM05D005190 ORTHO05D006183 7.7e-50 200.7 142 71.8
Duzib192G0082 Durio zibethinus HOM05D005190 ORTHO05D006183 7.7e-50 200.7 143 70.6
THA.LOC104800562 Tarenaya hassleriana HOM05D005190 ORTHO05D006183 7.7e-50 200.7 136 72.8
Sabra12G0031600 Salix brachista HOM05D005190 ORTHO05D006183 1.3e-49 199.9 143 71.3
TWI63G0483 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 1.7e-49 199.5 143 73.4
FAN07G0799 Fragaria x ananassa HOM05D005190 ORTHO05D006183 2.2e-49 199.1 143 69.2
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 2.9e-49 198.7 143 69.2
ClCG04G007440 Citrullus lanatus HOM05D005190 ORTHO05D006183 3.8e-49 198.4 143 69.2
PGSC0003DMG400012133 Solanum tuberosum HOM05D005190 ORTHO05D006183 6.5e-49 197.6 143 69.2
MBI19_g06603_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 8.5e-49 197.2 143 69.2
FAN17G1108 Fragaria x ananassa HOM05D000385 ORTHO05D006183 1.1e-48 196.8 141 68.8
MD13G1144000 Malus domestica HOM05D005190 ORTHO05D006183 1.1e-48 196.8 143 67.8
RcHm_v2.0_Chr4g0426821 Rosa chinensis HOM05D005190 ORTHO05D006183 1.1e-48 196.8 143 69.2
TAR636G2254 Trochodendron aralioides HOM05D005190 ORTHO05D006183 1.5e-48 196.4 139 71.2
Phvul.004G071200 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 1.9e-48 196.1 141 68.8
ATR0730G183 Amborella trichopoda HOM05D005190 ORTHO05D006183 2.5e-48 195.7 143 68.5
FvH4_4g21210 Fragaria vesca HOM05D005190 ORTHO05D006183 2.5e-48 195.7 143 67.8
FAN12G1005 Fragaria x ananassa HOM05D005190 ORTHO05D006183 2.5e-48 195.7 143 67.8
BcaC05g27594 Brassica carinata HOM05D005190 ORTHO05D006183 3.2e-48 195.3 146 69.9
A05p21200 Brassica napus HOM05D005190 ORTHO05D006183 3.2e-48 195.3 146 69.9
C05p35790 Brassica napus HOM05D005190 ORTHO05D006183 3.2e-48 195.3 146 69.9
BraA05t21026Z Brassica rapa HOM05D005190 ORTHO05D006183 3.2e-48 195.3 146 69.9
Manes.17G016100 Manihot esculenta HOM05D005190 ORTHO05D006183 3.2e-48 195.3 143 67.8
Ca_02362_v3 Cicer arietinum L. HOM05D005190 ORTHO05D006183 5.5e-48 194.5 144 68.8
Nitab4.5_0002793g0070 Nicotiana tabacum HOM05D005190 ORTHO05D006183 5.5e-48 194.5 143 69.9
Sc06g0001490 Simmondsia chinensis HOM05D005190 ORTHO05D006183 5.5e-48 194.5 143 67.8
Glyma.02G064900 Glycine max HOM05D005190 ORTHO05D006183 7.2e-48 194.1 142 69.7
SEGI_18361 Sequoiadendron giganteum HOM05D005190 ORTHO05D006183 7.2e-48 194.1 143 67.8
HPP92_019515 Vanilla planifolia HOM05D005190 ORTHO05D006183 7.2e-48 194.1 143 67.1
arahy.Tifrunner.gnm1.ann1.JER3JH Arachis hypogaea HOM05D005190 ORTHO05D006183 2.7e-47 192.2 143 65.0
Nitab4.5_0002367g0140 Nicotiana tabacum HOM05D005190 ORTHO05D006183 2.7e-47 192.2 143 69.2
Glyma.16G146000 Glycine max HOM05D005190 ORTHO05D006183 3.6e-47 191.8 142 68.3
Lalb_Chr13g0298851 Lupinus albus HOM05D005190 ORTHO05D006183 3.6e-47 191.8 143 64.3
Solyc08g082740.4 Solanum lycopersicum HOM05D005190 ORTHO05D006183 3.6e-47 191.8 143 68.5
Sopen08g030970 Solanum pennellii HOM05D005190 ORTHO05D006183 3.6e-47 191.8 143 68.5
Lalb_Chr07g0181821 Lupinus albus HOM05D005190 ORTHO05D006183 6.1e-47 191.0 143 64.3
Medtr7g096570 Medicago truncatula HOM05D005190 ORTHO05D006183 6.1e-47 191.0 144 66.0
CAN.G567.34 Capsicum annuum HOM05D005190 ORTHO05D006183 1.0e-46 190.3 143 69.2
arahy.Tifrunner.gnm1.ann1.CG6LTA Arachis hypogaea HOM05D005190 ORTHO05D006183 1.4e-46 189.9 143 65.0
EL10Ac3g06230 Beta vulgaris HOM05D005190 ORTHO05D006183 1.4e-46 189.9 144 70.1
HanXRQChr06g0166421 Helianthus annuus HOM05D005190 ORTHO05D006183 2.3e-46 189.1 143 65.0
Lsat_1_v5_gn_3_12780 Lactuca sativa HOM05D005190 ORTHO05D006183 2.3e-46 189.1 143 66.4
Phvul.004G071300 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 2.3e-46 189.1 144 66.7
Thhalv10011800m.g Eutrema salsugineum HOM05D005190 ORTHO05D006183 3.0e-46 188.7 114 75.4
PSO478G2609 Papaver somniferum HOM05D005190 ORTHO05D006183 4.0e-46 188.3 116 75.9
PSO782G1806 Papaver somniferum HOM05D005190 ORTHO05D006183 4.0e-46 188.3 116 75.9
AT1G48160 Arabidopsis thaliana HOM05D005190 ORTHO05D006183 6.8e-46 187.6 115 73.9
Carub.0001s3725 Capsella rubella HOM05D005190 ORTHO05D006183 8.8e-46 187.2 114 74.6
Sp1g35120 Schrenkiella parvula HOM05D005190 ORTHO05D006183 8.8e-46 187.2 115 73.9
Aa31LG10G5580 Aethionema arabicum HOM05D005190 ORTHO05D006183 1.2e-45 186.8 114 76.3
AL8G32340 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 1.2e-45 186.8 115 73.0
ECA246G1588 Erigeron canadensis HOM05D005190 ORTHO05D006183 1.2e-45 186.8 137 66.4
BcaB04g17462 Brassica carinata HOM05D005190 ORTHO05D006183 1.5e-45 186.4 115 73.9
arahy.Tifrunner.gnm1.ann1.R3ADAS Arachis hypogaea HOM05D005190 ORTHO05D006183 2.0e-45 186.0 115 73.9
arahy.Tifrunner.gnm1.ann1.W6NXGM Arachis hypogaea HOM05D005190 ORTHO05D006183 2.0e-45 186.0 115 73.9
Lj4g0016109 Lotus japonicus HOM05D005190 ORTHO05D006183 2.6e-45 185.7 144 64.6
HanXRQChr17g0534691 Helianthus annuus HOM05D005190 ORTHO05D006183 3.4e-45 185.3 143 65.0
Psat0ss1196g0480 Pisum sativum HOM05D005190 ORTHO05D006183 4.4e-45 184.9 139 66.2
AL1G54730 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 9.8e-45 183.7 114 71.9
AUR62002533 Chenopodium quinoa HOM05D005190 ORTHO05D006183 9.8e-45 183.7 144 64.6
BcaC07g37169 Brassica carinata HOM05D005190 ORTHO05D006183 2.8e-44 182.2 108 75.9
C08p05420 Brassica napus HOM05D005190 ORTHO05D006183 2.8e-44 182.2 108 75.9
BolC8t47359H Brassica oleracea HOM05D005190 ORTHO05D006183 2.8e-44 182.2 108 75.9
A08p05180 Brassica napus HOM05D005190 ORTHO05D006183 8.3e-44 180.6 108 75.0
BraA08t32536Z Brassica rapa HOM05D005190 ORTHO05D006183 8.3e-44 180.6 108 75.0
CARHR037790 Cardamine hirsuta HOM05D005190 ORTHO05D006183 1.1e-43 180.3 108 75.0
AUR62023660 Chenopodium quinoa HOM05D005190 ORTHO05D006183 1.8e-43 179.5 144 63.2
BolC5t32295H Brassica oleracea HOM05D005190 ORTHO05D006183 2.4e-43 179.1 108 74.1
Lsat_1_v5_gn_6_83381 Lactuca sativa HOM05D005190 ORTHO05D006183 5.4e-43 177.9 115 71.3
Zm00001eb066670 Zea mays HOM05D005190 ORTHO05D006183 3.5e-42 175.3 136 63.2
Zm00001eb081370 Zea mays HOM05D005190 ORTHO05D006183 3.5e-42 175.3 136 63.2
Mapoly0004s0269 Marchantia polymorpha HOM05D005190 ORTHO05D006183 5.0e-41 171.4 137 62.8
Os06g0342100 Oryza sativa ssp. japonica HOM05D005190 ORTHO05D006183 5.0e-41 171.4 137 62.0
Pp3c3_17800 Physcomitrium patens HOM05D005190 ORTHO05D006183 1.2e-39 166.8 134 64.2
TPR.G39662 Trifolium pratense HOM05D005190 ORTHO05D006183 3.0e-38 162.2 126 67.5
MD13G1143900 Malus domestica HOM05D005190 ORTHO05D006183 3.4e-37 158.7 119 68.1
unitig_747.g21355 Utricularia gibba HOM05D001490 ORTHO05D001450 1.4e-35 153.3 143 61.5
TPR.G16114 Trifolium pratense HOM05D005190 ORTHO05D006183 1.0e-33 147.1 97 67.0
Ah.07g203500 Amaranthus hybridus HOM05D005190 ORTHO05D006183 3.8e-33 145.2 93 69.9
BcaC08g43007 Brassica carinata HOM05D005190 ORTHO05D006183 1.2e-31 140.2 84 73.8
AagrBONN_evm.TU.Sc2ySwM_362.2360 Anthoceros agrestis HOM05D005190 ORTHO05D006183 1.0e-30 137.1 115 56.5
arahy.Tifrunner.gnm1.ann1.AFL9DX Arachis hypogaea HOM05D005190 ORTHO05D006183 9.8e-29 130.6 123 58.5
CBR_g39024 Chara braunii HOM05D005190 ORTHO05D006183 3.7e-28 128.6 134 53.0
SMO352G0034 Selaginella moellendorffii HOM05D005190 ORTHO05D006183 1.8e-27 126.3 107 60.7
C06p02560 Brassica napus HOM05D005190 ORTHO05D006183 2.4e-27 125.9 110 56.4
BcaC01g01495 Brassica carinata HOM05D005190 ORTHO05D006183 3.3e-24 115.5 135 49.6
MBI07_g26367_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 7.3e-24 114.4 115 52.2
vmacro08000 Vaccinium macrocarpon HOM05D005190 ORTHO05D006183 1.8e-22 109.8 86 67.4
Dinv29526 Davidia involucrata HOM05D005190 ORTHO05D006183 8.9e-22 107.5 65 83.1
ClCG05G006830 Citrullus lanatus HOM05D005190 ORTHO05D006183 2.0e-21 106.3 59 78.0
Eucgr.G02037 Eucalyptus grandis HOM05D005190 ORTHO05D006183 1.3e-20 103.6 67 67.2
Haze_12814 Corylus avellana HOM05D000165 ORTHO05D001328 1.4e-19 100.1 71 64.8
BolC6t35384H Brassica oleracea HOM05D005190 ORTHO05D006183 5.4e-19 98.2 59 71.2
MCO01G268 Micromonas commoda HOM05D005190 ORTHO05D006183 7.0e-19 97.8 100 49.0
Cre02.g095070 Chlamydomonas reinhardtii HOM05D005190 ORTHO05D006183 1.0e-17 94.0 104 47.1
CDE05G0439 Ceratophyllum demersum HOM05D005190 ORTHO05D006183 2.3e-17 92.8 76 60.5
Aqoxy2G01813 Aquilegia oxysepala HOM05D005190 ORTHO05D006183 3.0e-17 92.4 80 65.0
Actinidia18502 Actinidia chinensis HOM05D006846 ORTHO05D008473 7.3e-16 87.8 54 74.1
Cfa023211 Carpinus fangiana HOM05D005190 ORTHO05D006183 8.9e-14 80.9 105 41.0
Atru.chr4.92 Acer truncatum HOM05D005190 ORTHO05D006183 1.5e-13 80.1 55 72.7
RcHm_v2.0_Chr7g0219311 Rosa chinensis HOM05D005190 ORTHO05D006183 5.8e-13 78.2 59 61.0
EL10As1g23068 Beta vulgaris HOM05D005190 ORTHO05D006183 7.5e-13 77.8 80 51.2
MD13G1001700 Malus domestica HOM05D005190 ORTHO05D006183 4.1e-11 72.0 81 46.9
PRCOL_00001126 Prasinoderma coloniale HOM05D005190 ORTHO05D006183 1.2e-10 70.5 113 38.9


User provided reference genes

Program Settings