Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N00529 Erythranthe guttata HOM05D004493 ORTHO05D005117 0.0e+00 2985.7 1691 100.0
SGA_v2.0_scaffold6G03332 Striga asiatica HOM05D004493 ORTHO05D005117 0.0e+00 1474.1 1739 56.1
SalBow3G2955 Salvia bowleyana HOM05D004493 ORTHO05D005117 0.0e+00 1447.6 1683 53.7
Oeu023963.1 Olea europaea HOM05D004493 ORTHO05D005117 0.0e+00 1235.3 1704 48.7
Dinv06245 Davidia involucrata HOM05D004493 ORTHO05D005117 1.3e-289 1000.7 1657 42.3
Dinv15519 Davidia involucrata HOM05D004493 ORTHO05D005117 1.3e-289 1000.7 1657 42.3
CAN.G215.14 Capsicum annuum HOM05D004493 ORTHO05D005117 4.1e-267 926.0 1763 43.9
Cc01_g00330 Coffea canephora HOM05D004493 ORTHO05D005117 2.5e-264 916.8 1673 40.2
Sopen02g010770 Solanum pennellii HOM05D004493 ORTHO05D005117 1.8e-262 910.6 1771 43.3
TAR623G0338 Trochodendron aralioides HOM05D004493 ORTHO05D005117 9.2e-259 898.3 1720 39.5
QL01p007857 Quercus lobata HOM05D004493 ORTHO05D005117 8.6e-257 891.7 1703 39.3
Haze_22920 Corylus avellana HOM05D004493 ORTHO05D005117 2.0e-253 880.6 1710 40.0
Nitab4.5_0000890g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 5.4e-251 872.5 1670 39.6
Cfa009530 Carpinus fangiana HOM05D004493 ORTHO05D005117 1.9e-248 864.0 1703 39.6
Prupe.6G001200 Prunus persica HOM05D004493 ORTHO05D005117 2.4e-243 847.0 1701 37.7
CiPaw.13G180100 Carya illinoinensis HOM05D004493 ORTHO05D005117 3.5e-242 843.2 1680 38.2
Actinidia00919 Actinidia chinensis HOM05D004493 ORTHO05D005117 1.9e-240 837.4 1599 40.5
Ciclev10014017m.g Citrus clementina HOM05D004493 ORTHO05D005117 2.1e-239 833.9 1690 38.0
Thecc.09G205800 Theobroma cacao HOM05D004493 ORTHO05D005117 2.1e-239 833.9 1732 38.2
MD11G1001000 Malus domestica HOM05D004493 ORTHO05D005117 3.1e-238 830.1 1698 36.8
TWI34G1214 Tripterygium wilfordii HOM05D004493 ORTHO05D005117 4.4e-237 826.2 1668 38.0
RcHm_v2.0_Chr5g0084071 Rosa chinensis HOM05D004493 ORTHO05D005117 1.9e-235 820.8 1618 39.1
Gorai.004G097900 Gossypium raimondii HOM05D004493 ORTHO05D005117 2.7e-234 817.0 1730 37.6
Gohir.D08G092400 Gossypium hirsutum HOM05D004493 ORTHO05D005117 3.5e-234 816.6 1723 38.0
GSVIVG01025508001 Vitis vinifera HOM05D004493 ORTHO05D005117 3.5e-234 816.6 1645 37.6
FvH4_3g45960 Fragaria vesca HOM05D004493 ORTHO05D005117 1.1e-232 811.6 1622 38.2
Rhsim10G0100200 Rhododendron simsii HOM05D004493 ORTHO05D005117 6.2e-231 805.8 1767 36.9
DCAR_024091 Daucus carota HOM05D004493 ORTHO05D005117 3.1e-230 803.5 1696 37.4
Nn7g36938 Nelumbo nucifera HOM05D004493 ORTHO05D005117 3.8e-228 796.6 1764 36.6
arahy.Tifrunner.gnm1.ann1.M9LRNQ Arachis hypogaea HOM05D004493 ORTHO05D005117 6.6e-225 785.8 1634 36.9
Potri.003G223400 Populus trichocarpa HOM05D004493 ORTHO05D005117 2.4e-222 777.3 1700 37.8
Duzib168G1306 Durio zibethinus HOM05D004493 ORTHO05D005117 2.6e-221 773.9 1747 36.5
Lsat_1_v5_gn_1_71321 Lactuca sativa HOM05D004493 ORTHO05D005117 2.7e-218 763.8 1604 38.3
PGR119G2408 Punica granatum HOM05D004493 ORTHO05D005117 1.5e-216 758.1 1695 36.2
FAN25G0645 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.1e-214 751.9 1617 36.6
Lj5g0011313 Lotus japonicus HOM05D004493 ORTHO05D005117 5.8e-213 746.1 1617 37.2
THA.LOC104822690 Tarenaya hassleriana HOM05D004493 ORTHO05D005117 6.4e-212 742.7 1779 35.2
Phvul.007G078700 Phaseolus vulgaris HOM05D004493 ORTHO05D005117 1.1e-211 741.9 1693 36.3
ECA248G0177 Erigeron canadensis HOM05D004493 ORTHO05D000562 5.5e-211 739.6 1605 36.6
Atru.chr3.2057 Acer truncatum HOM05D004493 ORTHO05D005117 3.0e-209 733.8 1647 36.7
PSO384G0423 Papaver somniferum HOM05D004493 ORTHO05D005117 5.1e-209 733.0 1679 35.9
Psat6g065800 Pisum sativum HOM05D004493 ORTHO05D005117 5.1e-209 733.0 1604 36.7
CANSAT11G1563 Cannabis sativa HOM05D004493 ORTHO05D005117 3.3e-208 730.3 1799 34.1
Lalb_Chr13g0295751 Lupinus albus HOM05D004493 ORTHO05D005117 3.1e-206 723.8 1638 36.6
MBI04_g11451_MAGBIO Magnolia biondii HOM05D004493 ORTHO05D005117 5.3e-206 723.0 1842 34.4
Glyma.06G239100 Glycine max HOM05D004493 ORTHO05D005117 2.0e-205 721.1 1627 35.5
Sabra03G0166000 Salix brachista HOM05D004493 ORTHO05D005117 7.6e-205 719.2 1709 35.7
Glyma.18G007300 Glycine max HOM05D004493 ORTHO05D005117 1.7e-204 718.0 1639 35.6
Manes.15G110800 Manihot esculenta HOM05D004493 ORTHO05D005117 1.7e-204 718.0 1721 34.8
CsaV3_5G029430 Cucumis sativus L. HOM05D004493 ORTHO05D005117 6.5e-204 716.1 1619 36.0
AT1G55540 Arabidopsis thaliana HOM05D004493 ORTHO05D005117 1.6e-202 711.4 1720 33.7
CARHR045230 Cardamine hirsuta HOM05D004493 ORTHO05D005117 4.6e-202 709.9 1712 34.2
Carub.0001s4405 Capsella rubella HOM05D004493 ORTHO05D005117 5.7e-200 703.0 1738 34.1
FAN16G3321 Fragaria x ananassa HOM05D004493 ORTHO05D005117 6.3e-199 699.5 1758 34.8
AL1G63570 Arabidopsis lyrata HOM05D004493 ORTHO05D005117 8.2e-199 699.1 1734 33.8
BcaC01g01535 Brassica carinata HOM05D004493 ORTHO05D005117 1.8e-198 698.0 1653 34.8
Rhsim13G0209100 Rhododendron simsii HOM05D004493 ORTHO05D005117 2.6e-197 694.1 2044 31.8
BolC3t21593H Brassica oleracea HOM05D004493 ORTHO05D005117 1.1e-195 688.7 1683 34.2
A08p00540 Brassica napus HOM05D004493 ORTHO05D005117 1.4e-195 688.3 1688 34.0
Thhalv10011181m.g Eutrema salsugineum HOM05D004493 ORTHO05D005117 2.1e-194 684.5 1724 33.4
Aa31LG10G700 Aethionema arabicum HOM05D004493 ORTHO05D005117 2.3e-193 681.0 1740 33.6
Medtr1g069005 Medicago truncatula HOM05D004493 ORTHO05D005117 3.9e-193 680.2 1710 34.7
BraA08t32112Z Brassica rapa HOM05D004493 ORTHO05D005117 8.8e-193 679.1 1689 34.0
FAN21G4070 Fragaria x ananassa HOM05D004493 ORTHO05D005117 4.3e-192 676.8 1669 35.4
AUR62015878 Chenopodium quinoa HOM05D004493 ORTHO05D005117 7.4e-192 676.0 1635 34.7
Sp1g41160 Schrenkiella parvula HOM05D004493 ORTHO05D005117 1.7e-191 674.9 1662 33.5
Aqoxy1G00107 Aquilegia oxysepala HOM05D004493 ORTHO05D005117 2.8e-191 674.1 1855 36.3
Ca_09617_v3 Cicer arietinum L. HOM05D004493 ORTHO05D005117 1.0e-185 655.6 1646 36.1
TPR.G22583 Trifolium pratense HOM05D004493 ORTHO05D005117 3.0e-185 654.1 1666 34.7
EL10Ac4g07695 Beta vulgaris HOM05D004493 ORTHO05D005117 2.4e-182 644.4 1588 33.6
Sed0013310 Sechium edule HOM05D004493 ORTHO05D005117 4.1e-182 643.7 1606 33.9
C03p92870 Brassica napus HOM05D004493 ORTHO05D005117 5.3e-182 643.3 1631 33.2
AUR62020345 Chenopodium quinoa HOM05D004493 ORTHO05D005117 2.7e-178 630.9 1602 33.0
MSTRG.929 Avicennia marina HOM05D004493 ORTHO05D005117 1.4e-174 618.6 914 50.2
ClCG11G012960 Citrullus lanatus HOM05D004493 ORTHO05D005117 2.4e-174 617.8 1628 33.7
MELO3C011789.2 Cucumis melo HOM05D004493 ORTHO05D005117 2.1e-170 604.7 1025 40.5
QL01p007875 Quercus lobata HOM05D004493 ORTHO05D005117 4.5e-165 587.0 1297 36.5
Eucgr.J01744 Eucalyptus grandis HOM05D004493 ORTHO05D005117 2.9e-164 584.3 1551 34.0
Nitab4.5_0000075g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 7.2e-163 579.7 770 46.1
unitig_0.g1239 Utricularia gibba HOM05D004493 ORTHO05D005117 1.0e-161 575.9 1017 39.0
HPP92_014371 Vanilla planifolia HOM05D004493 ORTHO05D005117 4.5e-157 560.5 1601 32.9
arahy.Tifrunner.gnm1.ann1.578M4A Arachis hypogaea HOM05D004493 ORTHO05D005117 5.9e-157 560.1 908 40.2
ATR0068G024 Amborella trichopoda HOM05D004493 ORTHO05D005117 1.6e-154 552.0 1653 31.6
VMungo0720G0327 Vigna mungo HOM05D004493 ORTHO05D005117 3.5e-141 507.7 1428 33.3
Zm00001eb331030 Zea mays HOM05D004493 ORTHO05D005117 5.8e-136 490.3 1597 30.4
Sc06g0004140 Simmondsia chinensis HOM05D004493 ORTHO05D005117 8.3e-127 459.9 1331 32.2
Hund28035 Selenicereus undatus HOM05D004493 ORTHO05D005117 7.1e-126 456.8 1366 34.1
Hund28037 Selenicereus undatus HOM05D004493 ORTHO05D005117 7.1e-126 456.8 1366 34.1
Gohir.A08G083000 Gossypium hirsutum HOM05D004493 ORTHO05D005117 3.5e-117 427.9 935 37.9
Lj2A889G19 Lonicera japonica HOM05D004493 ORTHO05D005117 2.0e-112 412.1 883 36.4
FAN11G0901 Fragaria x ananassa HOM05D004493 ORTHO05D005117 9.3e-110 403.3 741 38.3
COL.COLO4_35068 Corchorus olitorius HOM05D004493 ORTHO05D005117 1.2e-109 402.9 872 38.8
Solyc02g032480.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 1.3e-98 366.3 602 40.5
Nitab4.5_0000075g0170 Nicotiana tabacum HOM05D004493 ORTHO05D005117 1.6e-98 365.9 1028 41.7
FAN11G3847 Fragaria x ananassa HOM05D004493 ORTHO05D005117 5.8e-96 357.5 818 36.7
Peaxi162Scf00186g01612 Petunia axillaris HOM05D004493 ORTHO05D005117 1.6e-93 349.4 579 40.2
Peaxi162Scf00186g00168 Petunia axillaris HOM05D004493 ORTHO05D005117 6.7e-92 344.0 802 39.0
Ah.06g182270 Amaranthus hybridus HOM05D004493 ORTHO05D005117 9.3e-86 323.6 434 41.5
Ah.06g182280 Amaranthus hybridus HOM05D004493 ORTHO05D005117 5.3e-81 307.8 916 32.8
Mapoly0022s0121 Marchantia polymorpha HOM05D004493 ORTHO05D005117 8.5e-79 300.4 1087 27.9
Cpa.g.sc119.15 Carica papaya HOM05D004493 ORTHO05D005117 7.4e-75 287.3 884 30.7
AagrBONN_evm.TU.Sc2ySwM_117.2650 Anthoceros agrestis HOM05D004493 ORTHO05D005117 1.0e-71 276.9 1047 27.6
Solyc02g032380.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 2.0e-67 262.7 436 43.3
Pp3c13_12950 Physcomitrium patens HOM05D004493 ORTHO05D005117 7.4e-67 260.8 1679 26.3
CDE02G1557 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 2.2e-66 259.2 1048 30.2
Solyc02g032490.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 5.2e-60 238.0 196 62.8
Eucgr.J01742 Eucalyptus grandis HOM05D004493 ORTHO05D005117 9.1e-57 227.3 472 32.8
VMungo0720G2527 Vigna mungo HOM05D004493 ORTHO05D005117 2.6e-56 225.7 234 50.4
COL.COLO4_35067 Corchorus olitorius HOM05D004493 ORTHO05D005117 1.0e-55 223.8 262 48.5
Hund05058 Selenicereus undatus HOM05D004493 ORTHO05D005117 1.9e-54 219.5 236 50.0
Hma1.2p1_0589F.1_g184760 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 3.6e-53 215.3 194 55.2
CDE02G2692 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 2.2e-50 206.1 236 46.2
MSTRG.12812 Avicennia marina HOM05D004493 ORTHO05D005117 8.3e-50 204.1 139 71.9
Peaxi162Scf00186g01613 Petunia axillaris HOM05D004493 ORTHO05D005117 7.2e-46 191.0 188 56.4
Hma1.2p1_0589F.1_g184740 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 2.3e-44 186.0 164 61.6
BcaNung06979 Brassica carinata HOM05D004493 ORTHO05D005117 4.0e-44 185.3 186 49.5
Dinv13491 Davidia involucrata HOM05D004493 ORTHO05D005117 3.7e-42 178.7 621 31.9
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 1.4e-41 176.8 596 33.1
Potri.001G001201 Populus trichocarpa HOM05D004493 ORTHO05D005117 1.6e-37 163.3 229 45.4
Hma1.2p1_0589F.1_g184750 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 8.9e-36 157.5 457 34.1
CSS0040729 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 2.9e-34 152.5 137 61.3
vmacro09616 Vaccinium macrocarpon HOM05D004493 ORTHO05D005117 4.9e-34 151.8 617 33.1
MSTRG.12811 Avicennia marina HOM05D004493 ORTHO05D005117 8.6e-31 141.0 114 72.8
SEGI_27502 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 1.9e-30 139.8 985 26.5
Solyc02g032450.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 4.3e-30 138.7 774 34.4
Lj2A889T20 Lonicera japonica HOM05D004493 ORTHO05D005117 5.6e-30 138.3 630 29.4
SalBow3G1183 Salvia bowleyana HOM05D004493 ORTHO05D005117 6.4e-26 124.8 128 56.2
QL01p007891 Quercus lobata HOM05D004493 ORTHO05D005117 3.2e-25 122.5 262 39.7
Zm00001eb202920 Zea mays HOM05D004493 ORTHO05D005117 7.0e-25 121.3 140 44.3
CSS0001625 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 4.6e-24 118.6 94 57.4
Eucgr.J01832 Eucalyptus grandis HOM05D004493 ORTHO05D005117 1.0e-23 117.5 146 44.5
Cpa.g.sc119.16 Carica papaya HOM05D004493 ORTHO05D005117 1.5e-19 103.6 81 63.0
SEGI_11629 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 3.4e-19 102.4 157 38.2
ATR0906G001 Amborella trichopoda HOM05D004493 ORTHO05D005117 1.1e-17 97.4 825 26.1
unitig_0.g1240 Utricularia gibba HOM05D004493 ORTHO05D005117 2.7e-16 92.8 331 32.6
ATR0906G002 Amborella trichopoda HOM05D004493 ORTHO05D005117 1.0e-15 90.9 236 31.4
SMO167G0064 Selaginella moellendorffii HOM05D004493 ORTHO05D005117 5.1e-15 88.6 483 24.4
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 2.8e-13 82.8 62 58.1
FAN03G1805 Fragaria x ananassa HOM05D004493 ORTHO05D005117 4.4e-11 75.5 218 29.8
FAN14G4108 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.7e-10 73.6 66 47.0
SEGI_28014 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 1.7e-10 73.6 117 31.6
FAN26G0295 Fragaria x ananassa HOM05D000290 ORTHO05D006676 2.4e-09 69.7 66 45.5
FAN14G5048 Fragaria x ananassa HOM05D004493 ORTHO05D005117 5.4e-09 68.6 63 46.0
QL04p013873 Quercus lobata HOM05D004493 ORTHO05D005117 7.1e-09 68.2 70 50.0
CDE02G0298 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 9.2e-09 67.8 61 55.7
Os07g0685400 Oryza sativa ssp. japonica HOM05D004493 ORTHO05D005117 3.5e-08 65.9 333 29.1
Cre07.g313500 Chlamydomonas reinhardtii HOM05D051285 ORTHO05D005117 7.8e-08 64.7 398 20.6
Gohir.A07G008001 Gossypium hirsutum HOM05D036473 ORTHO05D036031 1.7e-07 63.5 95 34.7
FAN12G3781 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.3e-07 63.2 74 43.2
Zm00001eb411990 Zea mays HOM05D004493 ORTHO05D005117 2.3e-07 63.2 128 32.8
Gorai.001G008300 Gossypium raimondii HOM05D036473 ORTHO05D036031 1.1e-06 60.8 91 35.2


User provided reference genes

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