Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N00227 Erythranthe guttata HOM05D005575 ORTHO05D007355 3.5e-253 877.9 464 100.0
SalBow3G3314 Salvia bowleyana HOM05D005575 ORTHO05D007355 2.3e-212 742.3 470 83.6
MSTRG.24710 Avicennia marina HOM05D005575 ORTHO05D007355 1.3e-207 726.5 470 83.0
SGA_v2.0_scaffold79G25614 Striga asiatica HOM05D005575 ORTHO05D007355 3.8e-207 724.9 470 80.9
Oeu064221.1 Olea europaea HOM05D005575 ORTHO05D007355 7.0e-201 704.1 485 75.7
Nitab4.5_0012347g0010 Nicotiana tabacum HOM05D005575 ORTHO05D007355 9.8e-195 683.7 470 74.7
Nitab4.5_0000941g0050 Nicotiana tabacum HOM05D005575 ORTHO05D007355 3.7e-194 681.8 470 77.0
GSVIVG01018083001 Vitis vinifera HOM05D005575 ORTHO05D007355 2.2e-191 672.5 468 74.1
Cc03_g04530 Coffea canephora HOM05D005575 ORTHO05D007355 6.5e-191 671.0 468 73.9
Peaxi162Scf00788g00114 Petunia axillaris HOM05D005575 ORTHO05D007355 1.5e-190 669.8 470 74.5
Actinidia08453 Actinidia chinensis HOM05D005575 ORTHO05D007355 7.2e-190 667.5 470 72.1
Dinv44604 Davidia involucrata HOM05D005575 ORTHO05D007355 1.8e-188 662.9 470 73.4
TWI53G0136 Tripterygium wilfordii HOM05D005575 ORTHO05D007355 3.0e-188 662.1 470 72.3
CANSAT78G2185 Cannabis sativa HOM05D005575 ORTHO05D007355 4.4e-187 658.3 468 70.5
Cfa008407 Carpinus fangiana HOM05D005575 ORTHO05D007355 5.7e-187 657.9 470 70.9
Dinv14070 Davidia involucrata HOM05D005575 ORTHO05D007355 9.8e-187 657.1 470 71.5
Nn3g19479 Nelumbo nucifera HOM05D005575 ORTHO05D007355 9.8e-187 657.1 469 73.8
PGSC0003DMG401006082 Solanum tuberosum HOM05D005575 ORTHO05D007355 1.7e-186 656.4 464 74.6
CiPaw.01G193100 Carya illinoinensis HOM05D005575 ORTHO05D007355 3.7e-186 655.2 470 71.7
Haze_11258 Corylus avellana HOM05D005575 ORTHO05D007355 2.4e-185 652.5 470 71.3
ECA240G2677 Erigeron canadensis HOM05D005575 ORTHO05D007355 3.1e-185 652.1 468 71.2
Nitab4.5_0000977g0090 Nicotiana tabacum HOM05D005575 ORTHO05D007355 2.7e-184 649.0 453 76.4
Solyc09g083000.3 Solanum lycopersicum HOM05D005575 ORTHO05D007355 3.5e-184 648.7 464 73.7
Sopen09g031870 Solanum pennellii HOM05D005575 ORTHO05D007355 4.5e-184 648.3 464 74.6
Manes.03G170700 Manihot esculenta HOM05D005575 ORTHO05D007355 7.7e-184 647.5 470 71.1
Solyc03g005310.4 Solanum lycopersicum HOM05D005575 ORTHO05D007355 1.0e-183 647.1 470 73.4
Sopen03g001350 Solanum pennellii HOM05D005575 ORTHO05D007355 1.0e-183 647.1 470 73.4
Nitab4.5_0003815g0070 Nicotiana tabacum HOM05D005575 ORTHO05D007355 1.7e-183 646.4 452 76.5
CSS0047423 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 2.9e-183 645.6 471 74.7
Peaxi162Scf00467g00914 Petunia axillaris HOM05D005575 ORTHO05D007355 3.8e-183 645.2 471 71.1
PGSC0003DMG400013391 Solanum tuberosum HOM05D005575 ORTHO05D007355 3.8e-183 645.2 470 73.6
CSS0022244 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 1.1e-182 643.7 470 70.4
CAN.G749.16 Capsicum annuum HOM05D005575 ORTHO05D007355 2.5e-182 642.5 417 76.7
Potri.008G159900 Populus trichocarpa HOM05D005575 ORTHO05D007355 2.5e-182 642.5 464 72.4
CSS0045755 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 3.3e-182 642.1 470 70.2
Migut.G00397 Erythranthe guttata HOM05D005575 ORTHO05D007355 3.3e-182 642.1 465 71.4
Prupe.1G025500 Prunus persica HOM05D005575 ORTHO05D007355 4.2e-182 641.7 477 71.7
TWI09G0420 Tripterygium wilfordii HOM05D005575 ORTHO05D007355 2.1e-181 639.4 468 70.3
ClCG05G004730 Citrullus lanatus HOM05D005575 ORTHO05D007355 3.6e-181 638.6 465 71.2
Eucgr.H03187 Eucalyptus grandis HOM05D005575 ORTHO05D007355 3.6e-181 638.6 464 69.6
Manes.15G034800 Manihot esculenta HOM05D005575 ORTHO05D007355 8.0e-181 637.5 470 69.6
Thecc.04G242000 Theobroma cacao HOM05D005575 ORTHO05D007355 1.4e-180 636.7 470 69.6
MELO3C006485.2 Cucumis melo HOM05D005575 ORTHO05D007355 2.3e-180 636.0 465 69.7
QL06p000355 Quercus lobata HOM05D005575 ORTHO05D007355 4.0e-180 635.2 469 72.3
CsaV3_3G012740 Cucumis sativus L. HOM05D005575 ORTHO05D007355 8.9e-180 634.0 465 69.7
COL.COLO4_13167 Corchorus olitorius HOM05D005575 ORTHO05D007355 2.6e-179 632.5 470 68.7
Duzib052G1036 Durio zibethinus HOM05D005575 ORTHO05D007355 5.7e-179 631.3 470 68.9
PSO461G0077 Papaver somniferum HOM05D005575 ORTHO05D007355 1.7e-178 629.8 464 69.6
Ca_01767_v3 Cicer arietinum L. HOM05D005575 ORTHO05D007355 2.2e-178 629.4 470 69.1
Sabra08G0121800 Salix brachista HOM05D005575 ORTHO05D007355 6.4e-178 627.9 491 67.6
Lj6g0016373 Lotus japonicus HOM05D005575 ORTHO05D007355 8.3e-178 627.5 471 71.1
Lalb_Chr01g0020841 Lupinus albus HOM05D005575 ORTHO05D007355 8.3e-178 627.5 471 70.5
PSO210G5698 Papaver somniferum HOM05D005575 ORTHO05D007355 8.3e-178 627.5 464 69.4
Psat6g136600 Pisum sativum HOM05D005575 ORTHO05D007355 8.3e-178 627.5 470 70.2
Sed0020385 Sechium edule HOM05D005575 ORTHO05D007355 8.3e-178 627.5 464 68.3
COL.COLO4_26929 Corchorus olitorius HOM05D005575 ORTHO05D007355 1.8e-177 626.3 470 68.5
HanXRQChr13g0423561 Helianthus annuus HOM05D005575 ORTHO05D007355 1.8e-177 626.3 469 68.0
Phvul.007G279400 Phaseolus vulgaris HOM05D005575 ORTHO05D007355 7.0e-177 624.4 470 70.2
Medtr1g041115 Medicago truncatula HOM05D005575 ORTHO05D007355 1.6e-176 623.2 470 68.7
VMungo0720G2094 Vigna mungo HOM05D005575 ORTHO05D007355 3.5e-176 622.1 470 70.2
Glyma.02G001600 Glycine max HOM05D005575 ORTHO05D007355 5.9e-176 621.3 470 70.0
PGR004G2878 Punica granatum HOM05D005575 ORTHO05D007355 5.9e-176 621.3 470 68.5
Lsat_1_v5_gn_3_124080 Lactuca sativa HOM05D005575 ORTHO05D007355 1.0e-175 620.5 456 69.3
Ciclev10004932m.g Citrus clementina HOM05D005575 ORTHO05D007355 2.9e-175 619.0 417 74.3
Gohir.A10G117000 Gossypium hirsutum HOM05D005575 ORTHO05D007355 5.0e-175 618.2 469 68.4
Duzib151G0571 Durio zibethinus HOM05D005575 ORTHO05D007355 1.1e-174 617.1 468 68.6
MD16G1218200 Malus domestica HOM05D005575 ORTHO05D007355 1.9e-174 616.3 426 72.8
MD13G1203000 Malus domestica HOM05D005575 ORTHO05D007355 2.5e-174 615.9 426 72.3
SGA_v2.0_scaffold101G29757 Striga asiatica HOM05D005575 ORTHO05D007355 2.5e-174 615.9 471 72.0
RcHm_v2.0_Chr4g0388931 Rosa chinensis HOM05D005575 ORTHO05D007355 3.3e-174 615.5 469 69.7
Rhsim02G0032000 Rhododendron simsii HOM05D005575 ORTHO05D007355 5.6e-174 614.8 470 68.9
arahy.Tifrunner.gnm1.ann1.0U5UXQ Arachis hypogaea HOM05D005575 ORTHO05D007355 7.3e-174 614.4 470 70.6
Atru.chr4.2312 Acer truncatum HOM05D005575 ORTHO05D007355 1.6e-173 613.2 422 72.3
Glyma.10G001900 Glycine max HOM05D005575 ORTHO05D007355 3.6e-173 612.1 470 69.4
Hund21566 Selenicereus undatus HOM05D005575 ORTHO05D007355 4.7e-173 611.7 469 68.7
Gohir.D10G150300 Gossypium hirsutum HOM05D005575 ORTHO05D007355 8.0e-173 610.9 470 68.1
EL10Ac8g19543 Beta vulgaris HOM05D005575 ORTHO05D007355 1.0e-172 610.5 516 63.6
Rhsim04G0195700 Rhododendron simsii HOM05D005575 ORTHO05D007355 1.4e-172 610.1 497 67.0
arahy.Tifrunner.gnm1.ann1.XPT1GW Arachis hypogaea HOM05D005575 ORTHO05D007355 1.8e-172 609.8 470 70.2
Gorai.011G167300 Gossypium raimondii HOM05D005575 ORTHO05D007355 2.3e-172 609.4 470 68.1
DCAR_030703 Daucus carota HOM05D005575 ORTHO05D007355 3.1e-172 609.0 402 72.9
Sc25g0004210 Simmondsia chinensis HOM05D005575 ORTHO05D007355 4.4e-171 605.1 465 68.0
TPR.G32768 Trifolium pratense HOM05D005575 ORTHO05D007355 7.5e-171 604.4 450 69.8
Aa31LG8G9490 Aethionema arabicum HOM05D005575 ORTHO05D007355 2.2e-170 602.8 468 67.3
FvH4_4g01960 Fragaria vesca HOM05D005575 ORTHO05D007355 3.7e-170 602.1 469 67.8
BcaC05g27989 Brassica carinata HOM05D005575 ORTHO05D007355 4.9e-170 601.7 468 67.1
C05p40000 Brassica napus HOM05D005575 ORTHO05D007355 4.9e-170 601.7 468 67.1
BolC5t32746H Brassica oleracea HOM05D005575 ORTHO05D007355 4.9e-170 601.7 468 67.1
Thhalv10020692m.g Eutrema salsugineum HOM05D005575 ORTHO05D007355 4.9e-170 601.7 470 67.4
BcaB06g26421 Brassica carinata HOM05D005575 ORTHO05D007355 8.3e-170 600.9 470 67.7
CARHR098930 Cardamine hirsuta HOM05D005575 ORTHO05D007355 1.4e-169 600.1 470 66.6
unitig_62.g23259 Utricularia gibba HOM05D005575 ORTHO05D007355 4.1e-169 598.6 453 68.4
AUR62034661 Chenopodium quinoa HOM05D005575 ORTHO05D007355 7.0e-169 597.8 417 71.7
Cpa.g.sc58.3 Carica papaya HOM05D005575 ORTHO05D007355 4.6e-168 595.1 437 69.6
BraA05t21452Z Brassica rapa HOM05D005575 ORTHO05D007355 1.0e-167 594.0 469 67.0
AT3G22990 Arabidopsis thaliana HOM05D005575 ORTHO05D007355 1.7e-167 593.2 470 66.6
A05p25710 Brassica napus HOM05D005575 ORTHO05D007355 2.3e-167 592.8 469 66.7
Carub.0003s2315 Capsella rubella HOM05D005575 ORTHO05D007355 2.3e-167 592.8 467 66.6
Sp3g20680 Schrenkiella parvula HOM05D005575 ORTHO05D007355 2.3e-167 592.8 470 66.6
FAN22G1081 Fragaria x ananassa HOM05D005575 ORTHO05D007355 3.0e-167 592.4 469 66.7
AL3G37400 Arabidopsis lyrata HOM05D005575 ORTHO05D007355 5.0e-167 591.7 470 67.0
vmacro08393 Vaccinium macrocarpon HOM05D005575 ORTHO05D007355 2.1e-165 586.3 400 72.8
Os07g0609766 Oryza sativa ssp. japonica HOM05D005575 ORTHO05D007355 2.8e-165 585.9 453 68.0
FAN17G2264 Fragaria x ananassa HOM05D005575 ORTHO05D007355 2.0e-163 579.7 491 63.5
HPP92_006286 Vanilla planifolia HOM05D005575 ORTHO05D007355 2.6e-163 579.3 469 65.7
ATR0665G105 Amborella trichopoda HOM05D005575 ORTHO05D007355 1.3e-162 577.0 453 64.7
Zm00001eb183490 Zea mays HOM05D005575 ORTHO05D007355 6.0e-160 568.2 460 65.0
vmacro15397 Vaccinium macrocarpon HOM05D005575 ORTHO05D007355 1.8e-156 556.6 369 74.8
AUR62008592 Chenopodium quinoa HOM05D005575 ORTHO05D007355 1.3e-154 550.4 401 69.6
SEGI_28733 Sequoiadendron giganteum HOM05D005575 ORTHO05D007355 1.3e-154 550.4 422 64.5
Lj3A720G71 Lonicera japonica HOM05D005575 ORTHO05D007355 1.1e-137 494.2 322 75.8
FAN12G1274 Fragaria x ananassa HOM05D005575 ORTHO05D007355 9.6e-134 481.1 383 67.4
Mapoly0008s0256 Marchantia polymorpha HOM05D005575 ORTHO05D007355 9.9e-131 471.1 409 57.9
SMO230G0018 Selaginella moellendorffii HOM05D005575 ORTHO05D007355 5.6e-126 455.3 410 56.1
AagrBONN_evm.TU.Sc2ySwM_117.635 Anthoceros agrestis HOM05D005575 ORTHO05D007355 3.1e-124 449.5 403 55.3
Pp3c9_410 Physcomitrium patens HOM05D005575 ORTHO05D007355 3.8e-114 416.0 454 50.0
Pp3c15_1060 Physcomitrium patens HOM05D005575 ORTHO05D007355 1.3e-101 374.4 412 50.2
CBR_g10806 Chara braunii HOM05D005575 ORTHO05D007355 5.1e-95 352.4 535 37.9
Nn1g02522 Nelumbo nucifera HOM05D005575 ORTHO05D007355 7.4e-94 348.6 266 71.4
SHI00566 Sapria himalayana HOM05D005575 ORTHO05D007355 7.0e-92 342.0 286 60.1
Actinidia05473 Actinidia chinensis HOM05D005575 ORTHO05D007355 3.8e-74 283.1 188 73.4
BcaC05g25996 Brassica carinata HOM05D005575 ORTHO05D007355 6.3e-69 265.8 273 57.9
BolC5t30651H Brassica oleracea HOM05D005575 ORTHO05D007355 4.1e-60 236.5 257 51.8
C05p19490 Brassica napus HOM05D005575 ORTHO05D007355 5.4e-60 236.1 257 51.8
TAR365G1190 Trochodendron aralioides HOM05D005575 ORTHO05D007355 2.3e-50 204.1 208 56.2
SHI00565 Sapria himalayana HOM05D005575 ORTHO05D007355 3.6e-40 170.2 173 56.1
C08p25570 Brassica napus HOM05D005575 ORTHO05D027690 3.1e-39 167.2 148 58.8
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 3.4e-38 163.7 145 56.6
TAR365G1076 Trochodendron aralioides HOM05D005575 ORTHO05D007355 2.3e-34 151.0 127 64.6
BolC8t50179H Brassica oleracea HOM05D005575 ORTHO05D027690 6.2e-32 142.9 125 58.4
AagrBONN_evm.TU.Sc2ySwM_344.3391 Anthoceros agrestis HOM05D005575 ORTHO05D007355 3.1e-31 140.6 373 29.8
BcaC07g39513 Brassica carinata HOM05D005575 ORTHO05D027690 5.4e-20 103.2 60 80.0
SalBow3G4542 Salvia bowleyana HOM05D005575 ORTHO05D007355 2.8e-16 90.9 59 72.9
Psat7g122560 Pisum sativum HOM05D005575 ORTHO05D007355 1.3e-13 82.0 59 61.0
Sabra10G0062800 Salix brachista HOM05D005575 ORTHO05D027690 2.9e-13 80.9 69 65.2
Cc06_g23150 Coffea canephora HOM05D005575 ORTHO05D007355 5.3e-07 60.1 70 55.7


User provided reference genes

Program Settings