Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M01572 Erythranthe guttata HOM05D004098 ORTHO05D005215 0.0e+00 1234.6 737 100.0
SalBow8G2465 Salvia bowleyana HOM05D004098 ORTHO05D005215 2.7e-300 1035.0 762 82.7
Oeu052018.2 Olea europaea HOM05D004098 ORTHO05D005215 2.4e-288 995.3 771 78.0
MSTRG.16125 Avicennia marina HOM05D004098 ORTHO05D005215 1.0e-286 989.9 748 82.1
Rhsim04G0006500 Rhododendron simsii HOM05D004098 ORTHO05D005215 1.3e-265 919.8 794 61.1
PGSC0003DMG400011237 Solanum tuberosum HOM05D004098 ORTHO05D005215 6.4e-265 917.5 749 76.8
Peaxi162Scf00018g00064 Petunia axillaris HOM05D004098 ORTHO05D005215 3.5e-263 911.8 784 71.2
Dinv19633 Davidia involucrata HOM05D004098 ORTHO05D005215 1.0e-262 910.2 756 75.5
Cc05_g15840 Coffea canephora HOM05D004098 ORTHO05D005215 3.0e-262 908.7 739 75.9
Solyc10g005650.3 Solanum lycopersicum HOM05D004098 ORTHO05D005215 2.5e-261 905.6 749 76.0
Nitab4.5_0000611g0190 Nicotiana tabacum HOM05D004098 ORTHO05D005215 3.3e-261 905.2 782 63.0
Sopen10g001620 Solanum pennellii HOM05D004098 ORTHO05D005215 7.3e-261 904.0 749 76.0
HanXRQChr05g0160701 Helianthus annuus HOM05D004098 ORTHO05D005215 2.4e-256 889.0 741 77.7
DCAR_019936 Daucus carota HOM05D004098 ORTHO05D005215 9.2e-256 887.1 787 63.7
Actinidia37106 Actinidia chinensis HOM05D004098 ORTHO05D005215 3.5e-255 885.2 755 73.0
Dinv42526 Davidia involucrata HOM05D004098 ORTHO05D005215 3.5e-255 885.2 642 69.9
Potri.011G170000 Populus trichocarpa HOM05D004098 ORTHO05D005215 6.0e-255 884.4 749 73.3
SGA_v2.0_scaffold7G03562 Striga asiatica HOM05D004098 ORTHO05D005215 5.1e-254 881.3 806 71.7
Manes.01G008000 Manihot esculenta HOM05D004098 ORTHO05D005215 3.3e-253 878.6 754 72.8
Lj8C185G3 Lonicera japonica HOM05D004098 ORTHO05D005215 9.5e-253 877.1 843 65.8
Nitab4.5_0004488g0010 Nicotiana tabacum HOM05D004098 ORTHO05D005215 2.1e-252 875.9 785 71.2
Hma1.2p1_0321F.1_g124430 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 2.8e-252 875.5 742 74.7
ECA246G1615 Erigeron canadensis HOM05D004098 ORTHO05D005215 1.7e-249 866.3 737 76.7
unitig_749.g13703 Utricularia gibba HOM05D004098 ORTHO05D005215 1.7e-249 866.3 755 71.9
Ciclev10007566m.g Citrus clementina HOM05D004098 ORTHO05D005215 2.9e-249 865.5 747 72.7
DCAR_016814 Daucus carota HOM05D004098 ORTHO05D005215 2.9e-249 865.5 774 69.5
Prupe.6G036900 Prunus persica HOM05D004098 ORTHO05D005215 2.4e-248 862.4 753 72.2
COL.COLO4_07798 Corchorus olitorius HOM05D004098 ORTHO05D005215 6.0e-247 857.8 739 73.5
TWI14G0432 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 3.9e-246 855.1 748 72.7
TWI39G0299 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 3.9e-246 855.1 748 72.7
MD11G1047800 Malus domestica HOM05D004098 ORTHO05D005215 5.1e-246 854.7 753 72.1
Manes.05G203450 Manihot esculenta HOM05D004098 ORTHO05D005215 8.1e-244 847.4 756 72.2
MD03G1045600 Malus domestica HOM05D004098 ORTHO05D005215 2.9e-241 839.0 751 71.0
Lsat_1_v5_gn_5_241 Lactuca sativa HOM05D004098 ORTHO05D005215 4.9e-241 838.2 763 71.6
GSVIVG01014864001 Vitis vinifera HOM05D004098 ORTHO05D005215 1.4e-240 836.6 751 72.2
PGR083G2418 Punica granatum HOM05D004098 ORTHO05D005215 2.4e-240 835.9 746 70.8
Cfa016972 Carpinus fangiana HOM05D004098 ORTHO05D005215 2.1e-239 832.8 753 70.7
Aqoxy4G02276 Aquilegia oxysepala HOM05D004098 ORTHO05D005215 4.6e-239 831.6 766 69.3
THA.LOC104813473 Tarenaya hassleriana HOM05D004098 ORTHO05D005215 1.3e-238 830.1 744 73.0
MSTRG.7048 Avicennia marina HOM05D004098 ORTHO05D005215 1.7e-238 829.7 748 71.7
Atru.chr2.3913 Acer truncatum HOM05D004098 ORTHO05D005215 2.3e-238 829.3 636 67.9
Potri.001G473100 Populus trichocarpa HOM05D004098 ORTHO05D005215 3.9e-238 828.6 750 70.7
TAR626G1397 Trochodendron aralioides HOM05D004098 ORTHO05D005215 6.6e-238 827.8 763 68.5
Sc03g0011840 Simmondsia chinensis HOM05D004098 ORTHO05D005215 9.0e-235 817.4 760 67.9
Sabra11G0137000 Salix brachista HOM05D004098 ORTHO05D005215 2.0e-234 816.2 829 65.4
FAN16G0876 Fragaria x ananassa HOM05D004098 ORTHO05D005215 2.6e-234 815.8 755 69.4
CAN.G492.64 Capsicum annuum HOM05D004098 ORTHO05D005215 4.5e-234 815.1 749 69.2
arahy.Tifrunner.gnm1.ann1.FI1VU9 Arachis hypogaea HOM05D004098 ORTHO05D005215 7.6e-234 814.3 760 70.0
FAN21G3119 Fragaria x ananassa HOM05D004098 ORTHO05D005215 7.6e-234 814.3 755 69.5
CiPaw.11G211200 Carya illinoinensis HOM05D004098 ORTHO05D005215 2.9e-233 812.4 759 69.3
Gohir.A04G000400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.9e-233 812.4 747 71.2
Gohir.D05G388750 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.9e-233 811.6 747 71.2
Gorai.009G455400 Gossypium raimondii HOM05D004098 ORTHO05D005215 1.1e-232 810.4 748 71.3
RcHm_v2.0_Chr5g0074241 Rosa chinensis HOM05D004098 ORTHO05D005215 1.1e-232 810.4 772 68.1
Nn2g14376 Nelumbo nucifera HOM05D004098 ORTHO05D005215 1.4e-232 810.1 760 68.9
CANSAT11G1316 Cannabis sativa HOM05D004098 ORTHO05D005215 1.9e-232 809.7 758 70.2
Gohir.D05G388800 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.2e-232 808.9 748 71.1
PSO675G3414 Papaver somniferum HOM05D004098 ORTHO05D005215 4.2e-232 808.5 764 67.8
Phvul.005G006500 Phaseolus vulgaris HOM05D004098 ORTHO05D005215 7.1e-232 807.7 743 69.9
FAN11G1160 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.2e-231 807.0 752 69.5
FvH4_3g41350 Fragaria vesca HOM05D004098 ORTHO05D005215 2.1e-231 806.2 752 69.5
Medtr3g009230 Medicago truncatula HOM05D004098 ORTHO05D005215 4.6e-231 805.1 749 71.8
Duzib268G0918 Durio zibethinus HOM05D004098 ORTHO05D005215 6.0e-231 804.7 744 68.8
PSO541G4185 Papaver somniferum HOM05D004098 ORTHO05D005215 1.0e-230 803.9 764 67.5
FAN25G0546 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.3e-230 803.5 780 67.4
CSS0008075 Camellia sinensis var. sinensis HOM05D004098 ORTHO05D005215 2.3e-230 802.7 680 75.0
Glyma.04G116700 Glycine max HOM05D004098 ORTHO05D005215 1.5e-229 800.0 743 69.6
VMungo1080G0600 Vigna mungo HOM05D004098 ORTHO05D005215 4.3e-229 798.5 742 69.3
Psat5g230760 Pisum sativum HOM05D004098 ORTHO05D005215 7.4e-229 797.7 749 71.6
arahy.Tifrunner.gnm1.ann1.36GALV Arachis hypogaea HOM05D004098 ORTHO05D005215 1.6e-228 796.6 782 66.9
Lj3g0001916 Lotus japonicus HOM05D004098 ORTHO05D005215 1.4e-227 793.5 752 68.4
Eucgr.F01979 Eucalyptus grandis HOM05D004098 ORTHO05D005215 7.6e-226 787.7 747 68.3
Glyma.06G320100 Glycine max HOM05D004098 ORTHO05D005215 9.9e-226 787.3 742 69.1
Ca_14121_v3 Cicer arietinum L. HOM05D004098 ORTHO05D005215 3.8e-225 785.4 750 71.6
AL8G31920 Arabidopsis lyrata HOM05D004098 ORTHO05D005215 8.4e-225 784.3 744 69.5
QL08p000136 Quercus lobata HOM05D004098 ORTHO05D005215 1.1e-224 783.9 765 68.9
Thecc.07G000300 Theobroma cacao HOM05D004098 ORTHO05D005215 1.1e-224 783.9 747 68.1
CARHR269690 Cardamine hirsuta HOM05D004098 ORTHO05D005215 5.5e-224 781.6 743 68.4
TPR.G16705 Trifolium pratense HOM05D004098 ORTHO05D005215 4.6e-223 778.5 635 67.9
C03p15880 Brassica napus HOM05D004098 ORTHO05D005215 8.7e-222 774.2 746 69.0
BolC3t14019H Brassica oleracea HOM05D004098 ORTHO05D005215 8.7e-222 774.2 772 66.6
BraA10t43460Z Brassica rapa HOM05D004098 ORTHO05D005215 2.8e-220 769.2 781 66.1
AT5G56290 Arabidopsis thaliana HOM05D004098 ORTHO05D005215 4.8e-220 768.5 744 69.0
AUR62043123 Chenopodium quinoa HOM05D004098 ORTHO05D005215 1.1e-219 767.3 749 66.8
Thhalv10012791m.g Eutrema salsugineum HOM05D004098 ORTHO05D005215 5.3e-219 765.0 744 68.3
BcaB01g04390 Brassica carinata HOM05D004098 ORTHO05D005215 2.6e-218 762.7 746 68.1
Lalb_Chr15g0079811 Lupinus albus HOM05D004098 ORTHO05D005215 1.0e-217 760.8 755 66.8
BraA03t10663Z Brassica rapa HOM05D004098 ORTHO05D005215 1.3e-217 760.4 773 59.5
A10p13580 Brassica napus HOM05D004098 ORTHO05D005215 3.2e-216 755.7 744 68.8
BcaC01g06414 Brassica carinata HOM05D004098 ORTHO05D005215 4.2e-216 755.4 747 68.5
A03p13590 Brassica napus HOM05D004098 ORTHO05D005215 5.5e-216 755.0 746 68.4
Lalb_Chr18g0048751 Lupinus albus HOM05D004098 ORTHO05D005215 1.2e-215 753.8 759 65.6
CsaV3_3G003580 Cucumis sativus L. HOM05D004098 ORTHO05D005215 2.7e-215 752.7 761 68.1
Sp6g18140 Schrenkiella parvula HOM05D004098 ORTHO05D005215 1.3e-214 750.4 746 68.1
MELO3C014028.2 Cucumis melo HOM05D004098 ORTHO05D005215 2.3e-214 749.6 761 67.9
Carub.0008s1661 Capsella rubella HOM05D004098 ORTHO05D005215 1.9e-213 746.5 744 68.0
BolC9t57610H Brassica oleracea HOM05D004098 ORTHO05D005215 6.9e-211 738.0 751 67.1
Aa31LG3G12200 Aethionema arabicum HOM05D004098 ORTHO05D005215 3.6e-207 725.7 747 66.0
Actinidia35440 Actinidia chinensis HOM05D004098 ORTHO05D005215 6.1e-207 724.9 771 53.6
C09p47570 Brassica napus HOM05D004098 ORTHO05D005215 1.4e-203 713.8 747 66.9
ClCG10G003580 Citrullus lanatus HOM05D004098 ORTHO05D005215 2.2e-201 706.4 862 59.2
EL10Ac4g07494 Beta vulgaris HOM05D004098 ORTHO05D005215 3.1e-195 686.0 751 63.2
BcaB05g22257 Brassica carinata HOM05D004098 ORTHO05D005215 3.9e-190 669.1 774 60.3
Hma1.2p1_0321F.1_g124440 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 3.5e-186 656.0 551 77.3
Haze_09929 Corylus avellana HOM05D004098 ORTHO05D005215 1.2e-183 647.5 794 59.1
BcaC04g20111 Brassica carinata HOM05D004098 ORTHO05D005215 7.5e-181 638.3 750 58.7
ATR0751G081 Amborella trichopoda HOM05D004098 ORTHO05D005215 2.0e-178 630.2 720 62.6
Sed0000599 Sechium edule HOM05D004098 ORTHO05D005215 5.7e-173 612.1 582 60.0
Mapoly0064s0022 Marchantia polymorpha HOM05D004098 ORTHO05D005215 3.0e-166 589.7 771 56.4
ClCG00G000320 Citrullus lanatus HOM05D004098 ORTHO05D005215 7.5e-165 585.1 1247 41.5
HPP92_017855 Vanilla planifolia HOM05D004098 ORTHO05D005215 6.4e-156 555.4 452 65.0
vmacro09792 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 5.4e-155 552.4 535 56.4
Pp3c14_5170 Physcomitrium patens HOM05D004098 ORTHO05D005215 3.5e-154 549.7 773 54.9
Os08g0500100 Oryza sativa ssp. japonica HOM05D004098 ORTHO05D005215 2.3e-145 520.4 756 54.6
Zm00001eb199560 Zea mays HOM05D004098 ORTHO05D005215 7.3e-144 515.4 761 55.5
Zm00001eb034080 Zea mays HOM05D004098 ORTHO05D005215 2.6e-141 506.9 757 54.4
SMO361G0081 Selaginella moellendorffii HOM05D004098 ORTHO05D005215 1.2e-135 488.0 772 51.0
SEGI_20896 Sequoiadendron giganteum HOM05D004098 ORTHO05D005215 4.6e-130 469.5 441 59.0
CBR_g45681 Chara braunii HOM05D004098 ORTHO05D005215 2.4e-110 404.1 657 41.7
AUR62017765 Chenopodium quinoa HOM05D004098 ORTHO05D005215 4.9e-108 396.4 381 57.7
CDE05G2641 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 7.1e-107 392.5 380 77.4
Ah.04g164860 Amaranthus hybridus HOM05D004098 ORTHO05D005215 1.6e-106 391.3 345 81.7
AUR62017764 Chenopodium quinoa HOM05D004098 ORTHO05D005215 1.5e-101 374.8 384 74.2
vmacro09791 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 2.4e-94 350.9 304 86.8
Ah.04g164850 Amaranthus hybridus HOM05D000499 ORTHO05D002036 5.3e-94 349.7 380 53.7
CDE05G2368 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 3.6e-74 283.9 332 51.8
BolC2t07653H Brassica oleracea HOM05D004098 ORTHO05D005215 7.4e-72 276.2 500 39.0
Cre14.g616750 Chlamydomonas reinhardtii HOM05D004098 ORTHO05D005215 6.3e-71 273.1 760 31.1
Gohir.A13G000950 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.6e-66 257.3 319 46.7
MCO05G026 Micromonas commoda HOM05D004098 ORTHO05D005215 8.8e-65 252.7 878 38.2
Cpa.g.sc12.52 Carica papaya HOM05D004098 ORTHO05D005215 1.0e-60 239.2 185 62.2
Gohir.A04G000600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.2e-58 232.3 235 52.3
C02p15370 Brassica napus HOM05D004098 ORTHO05D005215 5.2e-57 226.9 485 35.5
PRCOL_00000784 Prasinoderma coloniale HOM05D004098 ORTHO05D005215 1.8e-54 218.4 716 30.3
Cpa.g.sc12.51 Carica papaya HOM05D004098 ORTHO05D005215 1.8e-49 201.8 161 62.7
Gohir.A03G000002 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.1e-42 178.3 236 43.6
Gorai.009G455200 Gossypium raimondii HOM05D004098 ORTHO05D005215 8.3e-39 166.4 236 43.2
Gohir.A06G201500 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.5e-37 161.0 98 79.6
Lsat_1_v5_gn_6_79681 Lactuca sativa HOM05D004098 ORTHO05D005215 1.1e-35 156.0 152 53.9
Gohir.A12G000850 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.1e-33 147.9 236 40.3
Gohir.1Z049490 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.5e-32 145.6 92 75.0
Gohir.A08G253600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.6e-32 144.8 83 81.9
Lsat_1_v5_gn_8_35540 Lactuca sativa HOM05D004098 ORTHO05D005215 1.7e-31 142.1 213 46.5
Gohir.A01G000401 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.1e-30 137.5 81 77.8
Lsat_1_v5_gn_8_153381 Lactuca sativa HOM05D004098 ORTHO05D005215 9.2e-30 136.3 143 53.1
Gohir.A11G000300 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.1e-29 135.2 84 77.4
Hma1.2p1_0321F.1_g124420 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 6.0e-29 133.7 137 56.9
Gohir.A03G000007 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.4e-25 122.5 67 79.1
Lsat_1_v5_gn_2_71300 Lactuca sativa HOM05D004098 ORTHO05D005215 3.1e-25 121.3 82 74.4
Gohir.A05G415701 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.9e-22 112.1 69 75.4
A02p09220 Brassica napus HOM05D004098 ORTHO05D005215 4.1e-22 110.9 93 62.4
Haze_09931 Corylus avellana HOM05D000997 ORTHO05D000828 4.1e-22 110.9 109 50.5
MBI15_g32219_MAGBIO Magnolia biondii HOM05D004098 ORTHO05D005215 7.1e-22 110.2 133 54.1
Gohir.1Z049406 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.6e-21 109.0 102 54.9
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.6e-21 109.0 61 80.3
Gohir.D03G178425 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.5e-21 107.8 61 78.7
Cpa.g.sc12.49 Carica papaya HOM05D004098 ORTHO05D021823 2.3e-20 105.1 155 92.3
TPR.G8441 Trifolium pratense HOM05D004098 ORTHO05D021823 9.6e-19 99.8 154 90.9
Gohir.A07G135000 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.4e-17 95.9 60 76.7
HPP92_017856 Vanilla planifolia HOM05D004098 ORTHO05D005215 3.1e-17 94.7 110 52.7
Lsat_1_v5_gn_3_67900 Lactuca sativa HOM05D004098 ORTHO05D005215 6.6e-12 77.0 185 33.5
Gohir.1Z049608 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.5e-11 75.1 48 62.5
Gohir.A05G415601 Gossypium hirsutum HOM05D004098 ORTHO05D005215 9.6e-11 73.2 96 38.5
Cfa024256 Carpinus fangiana HOM05D032100 ORTHO05D126575 1.3e-10 72.8 190 30.5
Lsat_1_v5_gn_9_105500 Lactuca sativa HOM05D004098 ORTHO05D001482 1.4e-09 69.3 85 48.2
Gohir.A03G081400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 9.0e-09 66.6 60 61.7
C02p15380 Brassica napus HOM05D004098 ORTHO05D005215 4.4e-08 64.3 139 38.8
Hund01805 Selenicereus undatus HOM05D004098 ORTHO05D005215 2.2e-07 62.0 43 67.4
Hma1.2p1_1190F.1_g265410 Hydrangea macrophylla HOM05D001237 ORTHO05D001827 1.4e-06 59.3 59 50.8
Gohir.A06G201400 Gossypium hirsutum HOM05D002376 ORTHO05D004654 2.4e-06 58.5 31 83.9
Gohir.A08G000028 Gossypium hirsutum HOM05D002376 ORTHO05D004654 4.2e-06 57.8 30 86.7
Gohir.A09G249700 Gossypium hirsutum HOM05D004098 ORTHO05D021823 9.3e-06 56.6 31 80.6


User provided reference genes

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