Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M01382 Erythranthe guttata HOM05D005528 ORTHO05D007066 2.7e-143 511.9 250 100.0
SGA_v2.0_scaffold7G03770 Striga asiatica HOM05D005528 ORTHO05D007066 7.5e-117 424.1 246 83.3
Dinv13958 Davidia involucrata HOM05D005528 ORTHO05D007066 2.1e-111 406.0 255 76.9
Nitab4.5_0000143g0380 Nicotiana tabacum HOM05D005528 ORTHO05D007066 4.7e-111 404.8 247 76.9
SalBow8G0359 Salvia bowleyana HOM05D005528 ORTHO05D007066 1.0e-110 403.7 246 78.5
CAN.G1186.18 Capsicum annuum HOM05D005528 ORTHO05D007066 5.8e-109 397.9 250 75.2
GSVIVG01007237001 Vitis vinifera HOM05D005528 ORTHO05D007066 4.9e-108 394.8 246 77.6
MSTRG.7174 Avicennia marina HOM05D005528 ORTHO05D007066 1.4e-107 393.3 250 78.0
Cfa000120 Carpinus fangiana HOM05D005528 ORTHO05D007066 9.2e-107 390.6 246 75.6
Oeu049726.1 Olea europaea HOM05D005528 ORTHO05D007066 1.2e-106 390.2 244 76.2
CANSAT56G1404 Cannabis sativa HOM05D005528 ORTHO05D007066 2.7e-106 389.0 246 75.2
Lj1A1238T62 Lonicera japonica HOM05D005528 ORTHO05D007066 3.5e-106 388.7 252 75.0
RcHm_v2.0_Chr5g0001681 Rosa chinensis HOM05D005528 ORTHO05D007066 1.0e-105 387.1 246 74.4
Aqoxy1G04149 Aquilegia oxysepala HOM05D005528 ORTHO05D007066 1.7e-105 386.3 253 74.3
Oeu003172.1 Olea europaea HOM05D005528 ORTHO05D007066 1.7e-105 386.3 215 84.2
Cpa.g.sc152.65 Carica papaya HOM05D005528 ORTHO05D007066 2.3e-105 386.0 252 73.8
vmacro03653 Vaccinium macrocarpon HOM05D005528 ORTHO05D007066 2.3e-105 386.0 251 74.1
Manes.16G001400 Manihot esculenta HOM05D005528 ORTHO05D007066 3.0e-105 385.6 245 73.5
CiPaw.10G076700 Carya illinoinensis HOM05D005528 ORTHO05D007066 6.6e-105 384.4 244 75.4
CSS0037266 Camellia sinensis var. sinensis HOM05D005528 ORTHO05D007066 1.1e-104 383.6 250 74.0
Thecc.06G231500 Theobroma cacao HOM05D005528 ORTHO05D007066 1.2e-103 380.2 251 74.5
Nn1g07332 Nelumbo nucifera HOM05D005528 ORTHO05D007066 1.6e-103 379.8 249 73.9
PGSC0003DMG400013339 Solanum tuberosum HOM05D005528 ORTHO05D007066 1.6e-103 379.8 245 72.7
FAN25G0965 Fragaria x ananassa HOM05D005528 ORTHO05D007066 2.1e-103 379.4 245 73.9
Duzib235G0675 Durio zibethinus HOM05D005528 ORTHO05D007066 2.8e-103 379.0 246 74.4
FvH4_3g01110 Fragaria vesca HOM05D005528 ORTHO05D007066 2.8e-103 379.0 250 72.8
COL.COLO4_31864 Corchorus olitorius HOM05D005528 ORTHO05D007066 3.6e-103 378.6 247 75.7
FAN21G0894 Fragaria x ananassa HOM05D005528 ORTHO05D007066 3.6e-103 378.6 250 72.8
Psat4g003480 Pisum sativum HOM05D005528 ORTHO05D007066 3.6e-103 378.6 215 80.9
Sopen11g006860 Solanum pennellii HOM05D005528 ORTHO05D007066 3.6e-103 378.6 245 72.2
TAR624G1052 Trochodendron aralioides HOM05D005528 ORTHO05D007066 4.7e-103 378.3 246 73.2
Ciclev10016375m.g Citrus clementina HOM05D005528 ORTHO05D007066 6.2e-103 377.9 245 72.7
Solyc11g012070.3 Solanum lycopersicum HOM05D005528 ORTHO05D007066 8.1e-103 377.5 245 72.2
Nitab4.5_0001198g0200 Nicotiana tabacum HOM05D005528 ORTHO05D007066 1.1e-102 377.1 292 64.7
Cc09_g00990 Coffea canephora HOM05D005528 ORTHO05D007066 1.8e-102 376.3 215 81.4
Lalb_Chr15g0087911 Lupinus albus HOM05D005528 ORTHO05D007066 1.8e-102 376.3 250 73.2
Actinidia26871 Actinidia chinensis HOM05D005528 ORTHO05D007066 5.2e-102 374.8 247 74.5
PGR004G2776 Punica granatum HOM05D005528 ORTHO05D007066 5.2e-102 374.8 258 70.9
CsaV3_6G048570 Cucumis sativus L. HOM05D005528 ORTHO05D007066 8.9e-102 374.0 247 73.7
Potri.011G023000 Populus trichocarpa HOM05D005528 ORTHO05D007066 1.2e-101 373.6 248 73.0
TWI38G1545 Tripterygium wilfordii HOM05D005528 ORTHO05D007066 1.2e-101 373.6 246 74.0
ClCG01G021550 Citrullus lanatus HOM05D005528 ORTHO05D007066 1.5e-101 373.2 247 72.9
Medtr4g132890 Medicago truncatula HOM05D005528 ORTHO05D007066 1.5e-101 373.2 214 80.4
VMungo1215G2369 Vigna mungo HOM05D005528 ORTHO05D007066 2.0e-101 372.9 257 70.4
Gohir.D05G176400 Gossypium hirsutum HOM05D005528 ORTHO05D007066 3.4e-101 372.1 247 74.1
Gorai.009G181800 Gossypium raimondii HOM05D005528 ORTHO05D007066 3.4e-101 372.1 247 74.1
MD05G1356600 Malus domestica HOM05D005528 ORTHO05D007066 4.4e-101 371.7 246 70.3
Gohir.A05G173400 Gossypium hirsutum HOM05D005528 ORTHO05D007066 9.8e-101 370.5 247 73.7
Prupe.4G012400 Prunus persica HOM05D005528 ORTHO05D007066 1.3e-100 370.2 246 72.8
Lj4g0026553 Lotus japonicus HOM05D005528 ORTHO05D007066 2.2e-100 369.4 248 72.2
PSO541G4654 Papaver somniferum HOM05D005528 ORTHO05D007066 2.2e-100 369.4 255 69.0
Lsat_1_v5_gn_0_40241 Lactuca sativa HOM05D005528 ORTHO05D007066 8.3e-100 367.5 246 69.1
Eucgr.D01386 Eucalyptus grandis HOM05D005528 ORTHO05D007066 1.4e-99 366.7 245 71.0
TPR.G36996 Trifolium pratense HOM05D005528 ORTHO05D007066 1.9e-99 366.3 213 79.3
Hund21156 Selenicereus undatus HOM05D005528 ORTHO05D007066 9.2e-99 364.0 250 70.0
PSO675G5657 Papaver somniferum HOM05D005528 ORTHO05D007066 1.6e-98 363.2 258 68.2
Glyma.17G009100 Glycine max HOM05D005528 ORTHO05D007066 2.1e-98 362.8 213 78.9
Ca_21050_v3 Cicer arietinum L. HOM05D005528 ORTHO05D007066 3.5e-98 362.1 215 78.6
DCAR_030878 Daucus carota HOM05D005528 ORTHO05D007066 4.6e-98 361.7 214 78.0
unitig_37.g12163 Utricularia gibba HOM05D005528 ORTHO05D007066 1.3e-97 360.1 214 77.6
THA.LOC104812987 Tarenaya hassleriana HOM05D005528 ORTHO05D007066 1.7e-97 359.8 251 69.3
HanXRQChr01g0006671 Helianthus annuus HOM05D005528 ORTHO05D007066 2.3e-97 359.4 213 78.4
arahy.Tifrunner.gnm1.ann1.GWT3TM Arachis hypogaea HOM05D005528 ORTHO05D007066 3.0e-97 359.0 257 68.1
arahy.Tifrunner.gnm1.ann1.T9A2AP Arachis hypogaea HOM05D005528 ORTHO05D007066 3.0e-97 359.0 256 68.0
Sed0027431 Sechium edule HOM05D005528 ORTHO05D007066 1.9e-96 356.3 242 69.4
QL03p008514 Quercus lobata HOM05D005528 ORTHO05D007066 2.5e-96 355.9 251 70.5
AUR62021877 Chenopodium quinoa HOM05D005528 ORTHO05D007066 3.3e-96 355.5 214 77.6
Thhalv10025978m.g Eutrema salsugineum HOM05D005528 ORTHO05D007066 3.3e-96 355.5 258 65.9
Ah.09g234310 Amaranthus hybridus HOM05D005528 ORTHO05D007066 7.3e-96 354.4 213 77.5
AUR62012779 Chenopodium quinoa HOM05D005528 ORTHO05D007066 1.2e-95 353.6 214 77.1
Sc17g0007680 Simmondsia chinensis HOM05D005528 ORTHO05D007066 1.6e-95 353.2 256 68.4
Carub.0007s1901 Capsella rubella HOM05D005528 ORTHO05D007066 8.1e-95 350.9 227 71.8
Sabra11G0014000 Salix brachista HOM05D005528 ORTHO05D007066 1.1e-94 350.5 228 74.1
HanXRQChr01g0006681 Helianthus annuus HOM05D005528 ORTHO05D007066 1.4e-94 350.1 248 68.1
Os04g0669500 Oryza sativa ssp. japonica HOM05D005528 ORTHO05D007066 1.8e-94 349.7 231 68.4
EL10Ac8g20170 Beta vulgaris HOM05D005528 ORTHO05D007066 2.3e-94 349.4 214 75.2
Sp7g20420 Schrenkiella parvula HOM05D005528 ORTHO05D007066 2.3e-94 349.4 219 73.1
ECA248G2494 Erigeron canadensis HOM05D005528 ORTHO05D007066 5.2e-94 348.2 214 74.3
BcaNung01697 Brassica carinata HOM05D005528 ORTHO05D007066 6.8e-94 347.8 248 68.5
AT4G22300 Arabidopsis thaliana HOM05D005528 ORTHO05D007066 8.9e-94 347.4 245 67.3
A03p53440 Brassica napus HOM05D005528 ORTHO05D007066 8.9e-94 347.4 247 68.0
Atru.chr1.2485 Acer truncatum HOM05D000003 ORTHO05D000004 2.6e-93 345.9 216 75.9
Aa31LG6G4400 Aethionema arabicum HOM05D005528 ORTHO05D007066 1.7e-92 343.2 255 65.5
AL7G31320 Arabidopsis lyrata HOM05D005528 ORTHO05D007066 1.7e-92 343.2 256 65.6
BraA03t14410Z Brassica rapa HOM05D005528 ORTHO05D007066 3.8e-92 342.0 247 66.8
BcaNung02505 Brassica carinata HOM05D005528 ORTHO05D007066 4.9e-92 341.7 251 67.7
CARHR229200 Cardamine hirsuta HOM05D005528 ORTHO05D007066 6.4e-92 341.3 248 67.7
C07p51770 Brassica napus HOM05D005528 ORTHO05D007066 8.4e-92 340.9 251 67.3
HPP92_004758 Vanilla planifolia HOM05D005528 ORTHO05D007066 8.4e-92 340.9 243 65.4
ATR1128G032 Amborella trichopoda HOM05D005528 ORTHO05D007066 1.9e-91 339.7 211 74.4
QL10p003542 Quercus lobata HOM05D005528 ORTHO05D007066 2.4e-91 339.3 212 74.1
Zm00001eb066860 Zea mays HOM05D005528 ORTHO05D007066 4.1e-91 338.6 259 64.5
BolC7t45679H Brassica oleracea HOM05D005528 ORTHO05D007066 1.3e-89 333.6 263 64.6
CANSAT56G4535 Cannabis sativa HOM05D005528 ORTHO05D007066 1.5e-88 330.1 215 70.7
QL10p003559 Quercus lobata HOM05D005528 ORTHO05D007066 2.1e-87 326.2 339 53.1
SEGI_30686 Sequoiadendron giganteum HOM05D005528 ORTHO05D007066 2.0e-85 319.7 214 65.9
CARHR229210 Cardamine hirsuta HOM05D005528 ORTHO05D007066 1.3e-84 317.0 214 68.7
AT4G22305 Arabidopsis thaliana HOM05D005528 ORTHO05D007066 2.9e-84 315.8 214 69.2
AL7G31310 Arabidopsis lyrata HOM05D005528 ORTHO05D007066 7.1e-83 311.2 214 67.3
Carub.0007s1900 Capsella rubella HOM05D005528 ORTHO05D007066 3.5e-82 308.9 214 67.8
BcaNung02504 Brassica carinata HOM05D005528 ORTHO05D007066 6.0e-82 308.1 237 63.7
Peaxi162Scf00558g00217 Petunia axillaris HOM05D005528 ORTHO05D007066 6.6e-81 304.7 246 62.2
CDE04G2569 Ceratophyllum demersum HOM05D005528 ORTHO05D007066 9.6e-80 300.8 228 62.7
Rhsim13G0147900 Rhododendron simsii HOM05D005528 ORTHO05D007066 1.1e-75 287.3 308 53.2
GSVIVG01002096001 Vitis vinifera HOM05D005528 ORTHO05D007066 3.9e-73 278.9 170 76.5
Mapoly0191s0010 Marchantia polymorpha HOM05D005528 ORTHO05D007066 3.3e-72 275.8 200 62.5
Phvul.003G083000 Phaseolus vulgaris HOM05D005528 ORTHO05D007066 4.5e-69 265.4 148 81.8
CDE07G1265 Ceratophyllum demersum HOM05D005528 ORTHO05D007066 7.6e-69 264.6 176 68.8
Lalb_Chr15g0087931 Lupinus albus HOM05D005528 ORTHO05D007066 4.2e-67 258.8 150 80.0
Pp3c15_7880 Physcomitrium patens HOM05D005528 ORTHO05D007066 5.5e-67 258.5 210 57.6
Zm00001eb066850 Zea mays HOM05D005528 ORTHO05D007066 3.4e-61 239.2 213 54.5
vmacro03840 Vaccinium macrocarpon HOM05D005528 ORTHO05D007066 4.5e-61 238.8 176 67.0
Os04g0669600 Oryza sativa ssp. japonica HOM05D005528 ORTHO05D007066 3.8e-60 235.7 210 51.0
Lj5g0008711 Lotus japonicus HOM05D005528 ORTHO05D007066 6.9e-54 214.9 190 59.5
Potri.004G001701 Populus trichocarpa HOM05D005528 ORTHO05D007066 1.0e-49 201.1 148 66.2
MELO3C007429.2 Cucumis melo HOM05D005528 ORTHO05D007066 1.4e-46 190.7 135 69.6
HanXRQChr01g0006701 Helianthus annuus HOM05D005528 ORTHO05D007066 4.2e-43 179.1 148 60.8
AL8G44690 Arabidopsis lyrata HOM05D005528 ORTHO05D007066 4.6e-42 175.6 117 68.4
Haze_06901 Corylus avellana HOM05D005528 ORTHO05D007066 2.0e-40 170.2 246 43.1
Thhalv10023148m.g Eutrema salsugineum HOM05D005528 ORTHO05D007066 2.2e-39 166.8 140 57.9
Zm00001eb433300 Zea mays HOM05D005528 ORTHO05D007066 5.3e-30 135.6 152 48.7
Cre03.g164350 Chlamydomonas reinhardtii HOM05D001262 ORTHO05D001114 7.2e-27 125.2 215 35.8
PRCOL_00003009 Prasinoderma coloniale HOM05D005528 ORTHO05D007066 1.0e-25 121.3 213 31.9
PRCOL_00004932 Prasinoderma coloniale HOM05D005528 ORTHO05D001114 4.4e-24 115.9 226 31.4
MCO05G361 Micromonas commoda HOM05D001262 ORTHO05D001114 5.7e-24 115.5 204 30.9
Cfa027170 Carpinus fangiana HOM05D005528 ORTHO05D007066 2.2e-23 113.6 216 31.9
Lalb_Chr15g0087921 Lupinus albus HOM05D005528 ORTHO05D007066 7.0e-22 108.6 82 61.0
AL7G31780 Arabidopsis lyrata HOM05D005528 ORTHO05D000003 1.2e-21 107.8 68 72.1
CBR_g44615 Chara braunii HOM05D001262 ORTHO05D001114 1.3e-20 104.4 233 30.0
Glyma.07G264900 Glycine max HOM05D005528 ORTHO05D007066 6.5e-20 102.1 59 83.1
QL10p003478 Quercus lobata HOM05D005528 ORTHO05D007066 8.5e-20 101.7 66 69.7
Cfa002014 Carpinus fangiana HOM05D001262 ORTHO05D001114 1.5e-19 100.9 229 28.8
Eucgr.F02550 Eucalyptus grandis HOM05D001262 ORTHO05D001114 2.7e-18 96.7 232 27.2
ATR0390G001 Amborella trichopoda HOM05D005528 ORTHO05D007066 3.6e-18 96.3 57 73.7
MCO05G339 Micromonas commoda HOM05D005528 ORTHO05D007066 1.0e-17 94.7 204 31.4
Thhalv10011887m.g Eutrema salsugineum HOM05D005528 ORTHO05D007066 1.8e-17 94.0 60 75.0
SMO347G0182 Selaginella moellendorffii HOM05D001262 ORTHO05D001114 2.3e-17 93.6 223 32.3
Actinidia02324 Actinidia chinensis HOM05D005528 ORTHO05D007066 3.0e-17 93.2 64 64.1
MCO13G631 Micromonas commoda HOM05D005528 ORTHO05D007066 2.6e-16 90.1 218 29.8
MD10G1329700 Malus domestica HOM05D005528 ORTHO05D007066 5.7e-16 89.0 140 38.6
Sabra18G0031900 Salix brachista HOM05D001262 ORTHO05D001114 1.3e-15 87.8 232 28.4
Os04g0669700 Oryza sativa ssp. japonica HOM05D005528 ORTHO05D007066 3.7e-15 86.3 73 53.4
Ah.12g064000 Amaranthus hybridus HOM05D001262 ORTHO05D001114 1.8e-14 84.0 230 28.3
DCAR_003042 Daucus carota HOM05D001262 ORTHO05D001114 7.0e-14 82.0 232 26.7
QL03p008482 Quercus lobata HOM05D003814 ORTHO05D004399 5.9e-13 79.0 87 52.9
AagrBONN_evm.TU.Sc2ySwM_228.1448 Anthoceros agrestis HOM05D001262 ORTHO05D001114 8.6e-12 75.1 203 28.1
Cfa025413 Carpinus fangiana HOM05D001262 ORTHO05D017802 4.2e-11 72.8 174 27.6
Glyma.07G264950 Glycine max HOM05D005528 ORTHO05D007066 8.0e-10 68.6 39 74.4
QL03p008473 Quercus lobata HOM05D005528 ORTHO05D007066 9.8e-08 61.6 40 65.0


User provided reference genes

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