Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M01152 Erythranthe guttata HOM05D005670 ORTHO05D007612 1.3e-271 939.1 462 100.0
MSTRG.7329 Avicennia marina HOM05D005670 ORTHO05D007612 1.6e-226 789.3 503 77.3
SGA_v2.0_scaffold22G09723 Striga asiatica HOM05D005670 ORTHO05D007612 3.0e-220 768.5 504 75.8
Lj1A1206G64 Lonicera japonica HOM05D005670 ORTHO05D007612 1.0e-199 700.3 507 68.8
CSS0005949 Camellia sinensis var. sinensis HOM05D005670 ORTHO05D007612 1.3e-199 699.9 504 70.0
DCAR_004080 Daucus carota HOM05D005670 ORTHO05D007612 1.7e-199 699.5 504 69.2
TAR626G1957 Trochodendron aralioides HOM05D005670 ORTHO05D007612 5.0e-199 698.0 503 68.2
MD05G1314100 Malus domestica HOM05D005670 ORTHO05D007612 1.1e-198 696.8 503 67.6
Lsat_1_v5_gn_7_18941 Lactuca sativa HOM05D005670 ORTHO05D007612 7.9e-197 690.6 507 68.4
Potri.004G041800 Populus trichocarpa HOM05D005670 ORTHO05D007612 3.0e-196 688.7 507 68.2
QL05p039856 Quercus lobata HOM05D005670 ORTHO05D007612 3.9e-196 688.3 498 68.3
Prupe.4G045000 Prunus persica HOM05D005670 ORTHO05D007612 5.7e-195 684.5 504 68.3
FvH4_3g09410 Fragaria vesca HOM05D005670 ORTHO05D007612 2.8e-194 682.2 504 67.7
HanXRQChr04g0124101 Helianthus annuus HOM05D005670 ORTHO05D007612 3.5e-192 675.2 509 67.2
Hund23715 Selenicereus undatus HOM05D005670 ORTHO05D007612 4.5e-192 674.9 504 66.7
Gohir.A10G024800 Gossypium hirsutum HOM05D005670 ORTHO05D007612 3.8e-191 671.8 498 67.3
CiPaw.09G058400 Carya illinoinensis HOM05D005670 ORTHO05D007612 5.0e-191 671.4 501 66.5
Gohir.D10G025500 Gossypium hirsutum HOM05D005670 ORTHO05D007612 6.5e-191 671.0 498 67.1
RcHm_v2.0_Chr5g0008181 Rosa chinensis HOM05D005670 ORTHO05D007612 6.5e-191 671.0 504 66.7
Ciclev10014972m.g Citrus clementina HOM05D005670 ORTHO05D007612 3.2e-190 668.7 498 65.9
Gorai.011G026800 Gossypium raimondii HOM05D005670 ORTHO05D007612 4.2e-190 668.3 498 66.9
Thecc.06G189700 Theobroma cacao HOM05D005670 ORTHO05D007612 9.4e-190 667.2 499 67.7
FAN21G0121 Fragaria x ananassa HOM05D005670 ORTHO05D007612 3.6e-189 665.2 519 64.9
Nn1g06587 Nelumbo nucifera HOM05D005670 ORTHO05D007612 3.6e-189 665.2 503 66.0
CAN.G1164.15 Capsicum annuum HOM05D005670 ORTHO05D007612 4.7e-189 664.8 502 65.5
ECA236G2993 Erigeron canadensis HOM05D005670 ORTHO05D007612 8.0e-189 664.1 511 65.8
Nitab4.5_0005954g0030 Nicotiana tabacum HOM05D005670 ORTHO05D007612 5.7e-187 657.9 502 65.1
PGSC0003DMG400022386 Solanum tuberosum HOM05D005670 ORTHO05D007612 1.7e-186 656.4 502 64.3
AUR62016994 Chenopodium quinoa HOM05D005670 ORTHO05D007612 2.2e-186 656.0 503 63.2
Manes.16G026300 Manihot esculenta HOM05D005670 ORTHO05D007612 4.8e-186 654.8 497 65.0
FAN16G2869 Fragaria x ananassa HOM05D005670 ORTHO05D007612 8.2e-186 654.1 519 64.4
Sopen02g023260 Solanum pennellii HOM05D005670 ORTHO05D007612 4.1e-185 651.7 502 63.7
Solyc02g078400.3 Solanum lycopersicum HOM05D005670 ORTHO05D007612 7.0e-185 651.0 502 63.9
PSO675G5775 Papaver somniferum HOM05D005670 ORTHO05D007612 9.1e-185 650.6 500 64.6
Atru.chr10.1904 Acer truncatum HOM05D005670 ORTHO05D007612 4.5e-184 648.3 497 63.8
MBI18_g16998_MAGBIO Magnolia biondii HOM05D005670 ORTHO05D007612 1.3e-183 646.7 476 66.0
Sabra04G0025900 Salix brachista HOM05D005670 ORTHO05D007612 3.8e-183 645.2 491 66.8
TWI38G1891 Tripterygium wilfordii HOM05D005670 ORTHO05D007612 6.5e-183 644.4 504 63.1
AUR62014803 Chenopodium quinoa HOM05D005670 ORTHO05D007612 8.5e-183 644.0 503 62.6
PGR042G2793 Punica granatum HOM05D005670 ORTHO05D007612 1.1e-182 643.7 504 63.1
Cpa.g.sc27.55 Carica papaya HOM05D005670 ORTHO05D007612 1.5e-182 643.3 505 64.8
Aqoxy1G02519 Aquilegia oxysepala HOM05D005670 ORTHO05D007612 3.2e-182 642.1 497 64.6
Eucgr.E03319 Eucalyptus grandis HOM05D005670 ORTHO05D007612 3.2e-182 642.1 503 63.4
A09p25930 Brassica napus HOM05D005670 ORTHO05D007612 2.7e-181 639.0 501 63.9
BraA09t38162Z Brassica rapa HOM05D005670 ORTHO05D007612 2.7e-181 639.0 501 63.9
Sed0013715 Sechium edule HOM05D005670 ORTHO05D007612 6.1e-181 637.9 497 63.4
THA.LOC104812854 Tarenaya hassleriana HOM05D005670 ORTHO05D007612 3.0e-180 635.6 502 63.3
COL.COLO4_31493 Corchorus olitorius HOM05D005670 ORTHO05D008858 4.0e-180 635.2 467 66.6
Sc05g0007760 Simmondsia chinensis HOM05D005670 ORTHO05D007612 4.0e-180 635.2 500 63.0
BcaB01g01850 Brassica carinata HOM05D005670 ORTHO05D007612 1.5e-179 633.3 501 63.7
AT4G04955 Arabidopsis thaliana HOM05D005670 ORTHO05D007612 2.0e-179 632.9 494 63.2
Peaxi162Scf00947g00005 Petunia axillaris HOM05D005670 ORTHO05D007612 2.6e-179 632.5 480 64.4
BolC9t56124H Brassica oleracea HOM05D005670 ORTHO05D007612 4.4e-179 631.7 499 63.1
BcaC04g21352 Brassica carinata HOM05D005670 ORTHO05D007612 9.8e-179 630.6 499 63.1
C09p32840 Brassica napus HOM05D005670 ORTHO05D007612 9.8e-179 630.6 499 63.1
Thhalv10028578m.g Eutrema salsugineum HOM05D005670 ORTHO05D007612 1.3e-178 630.2 501 63.9
EL10Ac8g20366 Beta vulgaris HOM05D005670 ORTHO05D007612 1.7e-178 629.8 505 61.8
CsaV3_1G012190 Cucumis sativus L. HOM05D005670 ORTHO05D007612 1.7e-178 629.8 497 62.6
HPP92_014737 Vanilla planifolia HOM05D005670 ORTHO05D007612 1.7e-178 629.8 503 61.2
Rhsim02G0128200 Rhododendron simsii HOM05D005670 ORTHO05D007612 3.7e-178 628.6 463 67.4
AL6G48490 Arabidopsis lyrata HOM05D005670 ORTHO05D007612 6.3e-178 627.9 496 62.9
Sp6g04000 Schrenkiella parvula HOM05D005670 ORTHO05D007612 6.3e-178 627.9 503 63.6
THA.LOC104806286 Tarenaya hassleriana HOM05D005670 ORTHO05D007612 1.4e-177 626.7 505 61.6
Glyma.15G072900 Glycine max HOM05D005670 ORTHO05D007612 2.4e-177 625.9 506 60.9
ClCG03G005950 Citrullus lanatus HOM05D005670 ORTHO05D007612 3.1e-177 625.5 497 62.8
CARHR252570 Cardamine hirsuta HOM05D005670 ORTHO05D007612 4.1e-177 625.2 495 62.6
Aa31LG9G9510 Aethionema arabicum HOM05D005670 ORTHO05D007612 2.7e-176 622.5 501 62.9
Lj6g0007385 Lotus japonicus HOM05D005670 ORTHO05D007612 3.5e-176 622.1 511 62.2
Carub.0006s3289 Capsella rubella HOM05D005670 ORTHO05D007612 4.5e-176 621.7 499 62.1
Glyma.13G240600 Glycine max HOM05D005670 ORTHO05D007612 5.9e-176 621.3 506 60.5
Phvul.006G186800 Phaseolus vulgaris HOM05D005670 ORTHO05D007612 5.9e-176 621.3 508 61.2
Glyma.15G073000 Glycine max HOM05D005670 ORTHO05D007612 1.5e-174 616.7 514 59.9
CDE09G0528 Ceratophyllum demersum HOM05D005670 ORTHO05D007612 2.5e-174 615.9 496 60.1
FAN11G1478 Fragaria x ananassa HOM05D005670 ORTHO05D007612 3.2e-174 615.5 462 66.7
MD00G1095000 Malus domestica HOM05D005670 ORTHO05D007612 7.2e-174 614.4 448 67.2
Glyma.13G240500 Glycine max HOM05D005670 ORTHO05D007612 9.4e-174 614.0 514 59.9
Haze_06486 Corylus avellana HOM05D005670 ORTHO05D007612 1.6e-173 613.2 458 66.2
Zm00001eb433900 Zea mays HOM05D005670 ORTHO05D007612 3.6e-173 612.1 504 61.1
Lalb_Chr15g0089871 Lupinus albus HOM05D005670 ORTHO05D007612 4.0e-172 608.6 511 60.7
VMungo0540G1414 Vigna mungo HOM05D005670 ORTHO05D007612 4.0e-172 608.6 514 59.7
TPR.G36745 Trifolium pratense HOM05D005670 ORTHO05D007612 3.4e-171 605.5 498 61.6
VMungo0540G1652 Vigna mungo HOM05D005670 ORTHO05D007612 3.4e-171 605.5 506 59.3
Cc02_g13200 Coffea canephora HOM05D005670 ORTHO05D007612 5.7e-171 604.7 456 66.7
Sed0017986 Sechium edule HOM05D005670 ORTHO05D007612 7.5e-171 604.4 497 61.2
unitig_22.g6763 Utricularia gibba HOM05D005670 ORTHO05D007612 3.7e-170 602.1 496 62.3
Phvul.006G186700 Phaseolus vulgaris HOM05D005670 ORTHO05D007612 8.3e-170 600.9 514 59.3
Medtr2g013060 Medicago truncatula HOM05D005670 ORTHO05D007612 1.4e-169 600.1 501 60.3
Psat1g206560 Pisum sativum HOM05D005670 ORTHO05D007612 7.7e-168 594.3 508 59.6
CANSAT35G0124 Cannabis sativa HOM05D005670 ORTHO05D007612 2.9e-167 592.4 444 65.8
Nitab4.5_0002158g0080 Nicotiana tabacum HOM05D005670 ORTHO05D007612 1.6e-160 570.1 502 59.2
Ah.09g237260 Amaranthus hybridus HOM05D005670 ORTHO05D007612 2.0e-160 569.7 493 57.8
arahy.Tifrunner.gnm1.ann1.RER6EK Arachis hypogaea HOM05D005670 ORTHO05D007612 1.7e-159 566.6 508 57.1
Ca_00305_v3 Cicer arietinum L. HOM05D005670 ORTHO05D007612 9.5e-158 560.8 444 62.2
ATR0680G385 Amborella trichopoda HOM05D005670 ORTHO05D007612 2.8e-157 559.3 446 62.3
arahy.Tifrunner.gnm1.ann1.06VRVW Arachis hypogaea HOM05D005670 ORTHO05D007612 2.8e-157 559.3 517 55.5
Duzib192G0381 Durio zibethinus HOM05D005670 ORTHO05D007612 3.2e-153 545.8 498 57.8
MELO3C002593.2 Cucumis melo HOM05D005670 ORTHO05D007612 5.6e-142 508.4 552 50.7
Mapoly0068s0105 Marchantia polymorpha HOM05D005670 ORTHO05D007612 1.8e-140 503.4 502 49.8
Mapoly0156s0028 Marchantia polymorpha HOM05D005670 ORTHO05D007612 1.8e-140 503.4 502 49.8
AagrBONN_evm.TU.Sc2ySwM_344.2129 Anthoceros agrestis HOM05D005670 ORTHO05D007612 1.9e-134 483.4 515 48.7
Pp3c2_7120 Physcomitrium patens HOM05D005670 ORTHO05D007612 1.9e-134 483.4 496 49.0
vmacro15902 Vaccinium macrocarpon HOM05D005670 ORTHO05D007612 2.5e-134 483.0 922 35.2
SMO145G0108 Selaginella moellendorffii HOM05D005670 ORTHO05D007612 4.0e-132 475.7 499 49.7
Pp3c14_11050 Physcomitrium patens HOM05D005670 ORTHO05D007612 1.9e-129 466.8 471 47.6
Dinv07547 Davidia involucrata HOM05D005670 ORTHO05D007612 2.5e-126 456.4 352 66.5
CBR_g34175 Chara braunii HOM05D005670 ORTHO05D007612 1.1e-121 441.0 427 52.0
MCO09G610 Micromonas commoda HOM05D005670 ORTHO05D007612 6.7e-103 378.6 442 44.1
FvH4_5g20981 Fragaria vesca HOM05D005670 ORTHO05D007612 9.3e-97 358.2 288 64.6
Pp3c17_10590 Physcomitrium patens HOM05D005670 ORTHO05D007612 4.1e-92 342.8 397 44.8
Os04g0680400 Oryza sativa ssp. japonica HOM05D005670 ORTHO05D007612 7.7e-91 338.6 302 59.6
Haze_05742 Corylus avellana HOM05D005670 ORTHO05D007612 5.0e-90 335.9 235 67.7
Cre13.g592050 Chlamydomonas reinhardtii HOM05D005670 ORTHO05D007612 3.3e-86 323.2 480 40.8
FAN18G0055 Fragaria x ananassa HOM05D005670 ORTHO05D007612 8.2e-85 318.5 386 48.4
PRCOL_00001419 Prasinoderma coloniale HOM05D005670 ORTHO05D007612 3.7e-77 293.1 525 36.6
FAN08G0180 Fragaria x ananassa HOM05D005670 ORTHO05D007612 1.8e-71 274.2 284 54.9
Cfa026875 Carpinus fangiana HOM05D005670 ORTHO05D007612 2.0e-67 260.8 467 34.3
Eucgr.E03117 Eucalyptus grandis HOM05D005670 ORTHO05D007612 8.8e-63 245.4 263 50.2
HPP92_014748 Vanilla planifolia HOM05D005670 ORTHO05D007612 2.8e-61 240.4 231 51.9
Actinidia39456 Actinidia chinensis HOM05D005670 ORTHO05D007612 2.0e-59 234.2 322 45.0
Actinidia25619 Actinidia chinensis HOM05D005670 ORTHO05D007612 1.5e-54 218.0 157 72.0
Rhsim06G0021500 Rhododendron simsii HOM05D005670 ORTHO05D007612 6.3e-53 212.6 199 56.8
Rhsim04G0080800 Rhododendron simsii HOM05D000001 ORTHO05D000003 3.1e-52 210.3 236 50.0
Zm00001eb374970 Zea mays HOM05D005670 ORTHO05D007612 2.8e-48 197.2 168 55.4
Pp3s42_40 Physcomitrium patens HOM05D004829 ORTHO05D034576 6.1e-48 196.1 441 29.9
Eucgr.E03116 Eucalyptus grandis HOM05D005670 ORTHO05D007612 5.0e-42 176.4 114 68.4
FvH4_5g20980 Fragaria vesca HOM05D005670 ORTHO05D007612 5.4e-36 156.4 121 63.6
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 1.7e-26 124.8 403 27.0
Duzib235G0954 Durio zibethinus HOM05D005670 ORTHO05D007612 2.9e-21 107.5 189 37.6
Haze_26134 Corylus avellana HOM05D003658 ORTHO05D004457 4.6e-19 100.1 401 25.9
Dinv07548 Davidia involucrata HOM05D005670 ORTHO05D007612 2.3e-18 97.8 64 67.2
Haze_26731 Corylus avellana HOM05D004351 ORTHO05D005196 3.9e-18 97.1 488 24.6
Zm00001eb137210 Zea mays HOM05D005670 ORTHO05D007612 1.6e-16 91.7 119 43.7
BcaC04g21348 Brassica carinata HOM05D005670 ORTHO05D031838 4.4e-14 83.6 51 82.4
C09p32920 Brassica napus HOM05D005670 ORTHO05D031838 5.8e-14 83.2 50 84.0
BolC9t56127H Brassica oleracea HOM05D005670 ORTHO05D031838 5.8e-14 83.2 50 84.0
PRCOL_00004379 Prasinoderma coloniale HOM05D004351 ORTHO05D005196 3.8e-13 80.5 419 24.3
Cre02.g097000 Chlamydomonas reinhardtii HOM05D004351 ORTHO05D005196 1.1e-12 79.0 490 23.5
ATR1096G054 Amborella trichopoda HOM05D004351 ORTHO05D005196 1.2e-11 75.5 418 23.9
Os01g0807900 Oryza sativa ssp. japonica HOM05D004351 ORTHO05D005196 4.6e-11 73.6 417 24.9
SEGI_39462 Sequoiadendron giganteum HOM05D004351 ORTHO05D005196 1.7e-10 71.6 418 24.2
CsaV3_6G038890 Cucumis sativus L. HOM05D004351 ORTHO05D005196 2.3e-10 71.2 415 22.9
Zm00001eb150370 Zea mays HOM05D004351 ORTHO05D005196 5.1e-10 70.1 415 24.8
Hund21970 Selenicereus undatus HOM05D004351 ORTHO05D005196 6.6e-10 69.7 382 24.1
Gohir.D07G123400 Gossypium hirsutum HOM05D004351 ORTHO05D005196 1.5e-09 68.6 416 22.8
Gorai.001G133200 Gossypium raimondii HOM05D004351 ORTHO05D005196 1.5e-09 68.6 416 22.8
Potri.009G067700 Populus trichocarpa HOM05D004351 ORTHO05D005196 1.5e-09 68.6 419 23.9
Duzib168G2208 Durio zibethinus HOM05D004351 ORTHO05D005196 2.5e-09 67.8 414 23.2
Gohir.A07G119100 Gossypium hirsutum HOM05D004351 ORTHO05D005196 5.6e-09 66.6 413 23.0
arahy.Tifrunner.gnm1.ann1.3AG2SN Arachis hypogaea HOM05D004351 ORTHO05D005196 1.3e-08 65.5 402 24.6
Manes.02G136500 Manihot esculenta HOM05D004351 ORTHO05D005196 1.6e-08 65.1 418 23.0
MCO02G098 Micromonas commoda HOM05D004351 ORTHO05D005196 1.6e-08 65.1 422 21.8
arahy.Tifrunner.gnm1.ann1.A6ZB5M Arachis hypogaea HOM05D004351 ORTHO05D005196 2.1e-08 64.7 415 23.6
LjContig00564g0013946 Lotus japonicus HOM05D004351 ORTHO05D005196 3.6e-08 63.9 388 23.5
Rhsim02G0011400 Rhododendron simsii HOM05D005670 ORTHO05D007612 9.0e-07 59.3 102 38.2


User provided reference genes

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