Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M00571 Erythranthe guttata HOM05D000604 ORTHO05D004856 1.2e-22 109.0 54 100.0
Migut.M00474 Erythranthe guttata HOM05D000604 ORTHO05D004856 8.6e-18 92.8 47 100.0
Migut.M00477 Erythranthe guttata HOM05D000604 ORTHO05D004856 8.6e-18 92.8 47 100.0
Migut.M00563 Erythranthe guttata HOM05D000604 ORTHO05D004856 8.6e-18 92.8 47 100.0
Migut.O00375 Erythranthe guttata HOM05D000604 ORTHO05D004856 1.9e-17 91.7 47 97.9
Migut.B01297 Erythranthe guttata HOM05D000604 ORTHO05D004856 2.1e-16 88.2 47 95.7
MSTRG.7589 Avicennia marina HOM05D000604 ORTHO05D004856 8.9e-15 82.8 52 78.8
Manes.13G073400 Manihot esculenta HOM05D000604 ORTHO05D004856 3.4e-14 80.9 47 87.2
SHI01960 Sapria himalayana HOM05D000604 ORTHO05D004856 3.4e-14 80.9 47 83.0
SalBow8G1358 Salvia bowleyana HOM05D000604 ORTHO05D004856 4.4e-14 80.5 47 85.1
COL.COLO4_30935 Corchorus olitorius HOM05D000604 ORTHO05D004856 5.7e-14 80.1 47 85.1
Duzib235G1121 Durio zibethinus HOM05D000604 ORTHO05D004856 5.7e-14 80.1 46 89.1
Gohir.D10G047700 Gossypium hirsutum HOM05D000604 ORTHO05D004856 9.8e-14 79.3 47 85.1
Gorai.011G050800 Gossypium raimondii HOM05D000604 ORTHO05D004856 9.8e-14 79.3 47 85.1
Lj2A328T81 Lonicera japonica HOM05D000604 ORTHO05D004856 9.8e-14 79.3 47 85.1
Nitab4.5_0000844g0350 Nicotiana tabacum HOM05D000604 ORTHO05D004856 9.8e-14 79.3 47 85.1
Peaxi162Scf00036g01624 Petunia axillaris HOM05D000604 ORTHO05D004856 9.8e-14 79.3 47 85.1
Solyc02g081940.3 Solanum lycopersicum HOM05D000604 ORTHO05D004856 9.8e-14 79.3 47 85.1
Sopen02g026570 Solanum pennellii HOM05D000604 ORTHO05D004856 9.8e-14 79.3 47 85.1
PGSC0003DMG400007320 Solanum tuberosum HOM05D000604 ORTHO05D004856 9.8e-14 79.3 47 85.1
Thecc.06G136200 Theobroma cacao HOM05D000604 ORTHO05D004856 1.3e-13 79.0 47 85.1
CiPaw.04G077700 Carya illinoinensis HOM05D000604 ORTHO05D004856 2.2e-13 78.2 47 83.0
Cc09_g04940 Coffea canephora HOM05D000604 ORTHO05D004856 2.2e-13 78.2 47 83.0
CsaV3_4G006300 Cucumis sativus L. HOM05D000604 ORTHO05D004856 2.2e-13 78.2 47 80.9
Eucgr.K02063 Eucalyptus grandis HOM05D000604 ORTHO05D004856 2.2e-13 78.2 47 80.9
Sed0014227 Sechium edule HOM05D000604 ORTHO05D004856 2.2e-13 78.2 47 80.9
Actinidia13225 Actinidia chinensis HOM05D000604 ORTHO05D004856 2.8e-13 77.8 47 83.0
Cfa008710 Carpinus fangiana HOM05D000604 ORTHO05D004856 2.8e-13 77.8 47 83.0
Ciclev10017571m.g Citrus clementina HOM05D000604 ORTHO05D004856 2.8e-13 77.8 47 83.0
Dinv05871 Davidia involucrata HOM05D000604 ORTHO05D004856 2.8e-13 77.8 47 83.0
Hma1.2p1_0589F.1_g184700 Hydrangea macrophylla HOM05D000604 ORTHO05D004856 2.8e-13 77.8 47 83.0
Gohir.A10G046400 Gossypium hirsutum HOM05D000604 ORTHO05D004856 3.7e-13 77.4 47 83.0
CDE05G3452 Ceratophyllum demersum HOM05D000604 ORTHO05D004856 4.9e-13 77.0 47 83.0
MELO3C016321.2 Cucumis melo HOM05D000604 ORTHO05D004856 4.9e-13 77.0 47 78.7
MD10G1238300 Malus domestica HOM05D000604 ORTHO05D004856 4.9e-13 77.0 47 83.0
Haze_11719 Corylus avellana HOM05D000604 ORTHO05D004856 6.3e-13 76.6 47 80.9
unitig_37.g13055 Utricularia gibba HOM05D000604 ORTHO05D004856 6.3e-13 76.6 47 78.7
Aqoxy5G00580 Aquilegia oxysepala HOM05D000604 ORTHO05D004856 8.3e-13 76.3 47 83.0
Phvul.001G070900 Phaseolus vulgaris HOM05D000604 ORTHO05D004856 8.3e-13 76.3 47 78.7
TWI73G0328 Tripterygium wilfordii HOM05D000604 ORTHO05D004856 8.3e-13 76.3 47 80.9
MSTRG.7607 Avicennia marina HOM05D000604 ORTHO05D004856 1.1e-12 75.9 47 83.0
Prupe.4G106000 Prunus persica HOM05D000604 ORTHO05D004856 1.1e-12 75.9 47 80.9
Zm00001eb430700 Zea mays HOM05D000604 ORTHO05D004856 1.1e-12 75.9 46 82.6
Zm00001eb442350 Zea mays HOM05D000604 ORTHO05D004856 1.1e-12 75.9 46 82.6
ClCG07G014770 Citrullus lanatus HOM05D000604 ORTHO05D004856 1.4e-12 75.5 47 78.7
Glyma.14G154500 Glycine max HOM05D000604 ORTHO05D004856 1.4e-12 75.5 47 78.7
Medtr2g018390 Medicago truncatula HOM05D000604 ORTHO05D004856 1.4e-12 75.5 49 75.5
Glyma.13G032300 Glycine max HOM05D000604 ORTHO05D004856 1.8e-12 75.1 47 80.9
QL06p028587 Quercus lobata HOM05D000604 ORTHO05D004856 1.8e-12 75.1 47 83.0
AUR62039584 Chenopodium quinoa HOM05D000604 ORTHO05D004856 2.4e-12 74.7 47 76.6
Atru.BG.155.p Acer truncatum HOM05D000604 ORTHO05D004856 3.2e-12 74.3 47 78.7
arahy.Tifrunner.gnm1.ann1.2H30NS Arachis hypogaea HOM05D000604 ORTHO05D004856 3.2e-12 74.3 47 78.7
arahy.Tifrunner.gnm1.ann1.GY8SZ4 Arachis hypogaea HOM05D000604 ORTHO05D004856 3.2e-12 74.3 47 78.7
Os04g0611500 Oryza sativa ssp. japonica HOM05D000604 ORTHO05D004856 3.2e-12 74.3 46 80.4
PSO017G6514 Papaver somniferum HOM05D000604 ORTHO05D004856 3.2e-12 74.3 46 80.4
PSO063G6978 Papaver somniferum HOM05D000604 ORTHO05D004856 3.2e-12 74.3 46 80.4
PSO724G1052 Papaver somniferum HOM05D000604 ORTHO05D004856 3.2e-12 74.3 46 80.4
Ca_08573_v3 Cicer arietinum L. HOM05D000604 ORTHO05D004856 4.1e-12 73.9 50 74.0
Cpa.g.sc192.5 Carica papaya HOM05D000604 ORTHO05D004856 5.4e-12 73.6 47 76.6
AUR62019648 Chenopodium quinoa HOM05D000604 ORTHO05D004856 5.4e-12 73.6 47 74.5
Lj1g0003644 Lotus japonicus HOM05D001476 ORTHO05D004856 5.4e-12 73.6 47 76.6
Lalb_Chr19g0132151 Lupinus albus HOM05D000604 ORTHO05D004856 5.4e-12 73.6 47 78.7
Potri.003G149600 Populus trichocarpa HOM05D000604 ORTHO05D004856 5.4e-12 73.6 44 81.8
Sabra03G0108600 Salix brachista HOM05D000604 ORTHO05D004856 5.4e-12 73.6 44 81.8
Hund20696 Selenicereus undatus HOM05D000604 ORTHO05D004856 5.4e-12 73.6 47 76.6
PSO135G0531 Papaver somniferum HOM05D000604 ORTHO05D004856 7.0e-12 73.2 46 78.3
DCAR_007039 Daucus carota HOM05D000604 ORTHO05D004856 9.2e-12 72.8 47 76.6
Oeu014816.1 Olea europaea HOM05D000604 ORTHO05D004856 9.2e-12 72.8 47 78.7
TPR.G6171 Trifolium pratense HOM05D000604 ORTHO05D004856 1.2e-11 72.4 50 68.0
GSVIVG01012163001 Vitis vinifera HOM05D000604 ORTHO05D004856 1.2e-11 72.4 47 76.6
AUR62026050 Chenopodium quinoa HOM05D000604 ORTHO05D004856 2.0e-11 71.6 47 72.3
VMungo0647G0785 Vigna mungo HOM05D000604 ORTHO05D004856 2.0e-11 71.6 47 74.5
MBI18_g32818_MAGBIO Magnolia biondii HOM05D000604 ORTHO05D004856 2.7e-11 71.2 47 74.5
Aa31LG6G2170 Aethionema arabicum HOM05D000604 ORTHO05D004856 3.5e-11 70.9 50 70.0
ECA236G3264 Erigeron canadensis HOM05D000604 ORTHO05D004856 3.5e-11 70.9 47 76.6
PGR119G0174 Punica granatum HOM05D000604 ORTHO05D004856 3.5e-11 70.9 47 76.6
HanXRQChr04g0119081 Helianthus annuus HOM05D000604 ORTHO05D004856 4.5e-11 70.5 47 74.5
Lsat_1_v5_gn_7_29360 Lactuca sativa HOM05D000604 ORTHO05D004856 4.5e-11 70.5 47 74.5
THA.LOC104806210 Tarenaya hassleriana HOM05D000604 ORTHO05D004856 7.8e-11 69.7 47 70.2
Sp7g18180 Schrenkiella parvula HOM05D000604 ORTHO05D004856 1.3e-10 68.9 47 70.2
ATR0680G306 Amborella trichopoda HOM05D000604 ORTHO05D004856 1.7e-10 68.6 47 74.5
AUR62006166 Chenopodium quinoa HOM05D000604 ORTHO05D004856 1.7e-10 68.6 47 70.2
Nitab4.5_0000632g0160 Nicotiana tabacum HOM05D000604 ORTHO05D004856 1.7e-10 68.6 42 83.3
Ah.04g154050 Amaranthus hybridus HOM05D000604 ORTHO05D004856 2.9e-10 67.8 47 68.1
Carub.0007s2157 Capsella rubella HOM05D000604 ORTHO05D004856 2.9e-10 67.8 47 72.3
Lj1g0003482 Lotus japonicus HOM05D000604 ORTHO05D004856 2.9e-10 67.8 47 74.5
MD05G1258600 Malus domestica HOM05D000604 ORTHO05D004856 2.9e-10 67.8 42 81.0
AL7G34450 Arabidopsis lyrata HOM05D000604 ORTHO05D004856 3.9e-10 67.4 47 70.2
AT4G19610 Arabidopsis thaliana HOM05D000604 ORTHO05D004856 3.9e-10 67.4 47 70.2
TAR371G0160 Trochodendron aralioides HOM05D000604 ORTHO05D004856 3.9e-10 67.4 41 80.5
EL10Ac2g02981 Beta vulgaris HOM05D000604 ORTHO05D004856 5.0e-10 67.0 42 76.2
BcaNung01771 Brassica carinata HOM05D000604 ORTHO05D004856 5.0e-10 67.0 47 70.2
Thhalv10024436m.g Eutrema salsugineum HOM05D000604 ORTHO05D004856 5.0e-10 67.0 47 68.1
Sc24g0002870 Simmondsia chinensis HOM05D000604 ORTHO05D004856 5.0e-10 67.0 47 61.7
TAR626G0202 Trochodendron aralioides HOM05D000604 ORTHO05D004856 5.0e-10 67.0 43 79.1
EL10Ac6g13453 Beta vulgaris HOM05D000604 ORTHO05D004856 6.6e-10 66.6 47 70.2
CSS0014014 Camellia sinensis var. sinensis HOM05D000604 ORTHO05D004856 8.6e-10 66.2 39 84.6
Ah.04g154070 Amaranthus hybridus HOM05D000604 ORTHO05D004856 1.1e-09 65.9 42 73.8
Ah.10g032170 Amaranthus hybridus HOM05D000604 ORTHO05D004856 1.1e-09 65.9 47 66.0
AL6G15620 Arabidopsis lyrata HOM05D000604 ORTHO05D004856 1.5e-09 65.5 47 70.2
Rhsim02G0169700 Rhododendron simsii HOM05D000604 ORTHO05D004856 2.5e-09 64.7 43 74.4
AagrBONN_evm.TU.Sc2ySwM_117.1847 Anthoceros agrestis HOM05D000604 ORTHO05D004856 3.3e-09 64.3 50 60.0
CANSAT56G2059 Cannabis sativa HOM05D000604 ORTHO05D004856 3.3e-09 64.3 47 66.0
AL6G21620 Arabidopsis lyrata HOM05D000604 ORTHO05D004856 4.3e-09 63.9 47 63.8
AT5G08695 Arabidopsis thaliana HOM05D000604 ORTHO05D004856 4.3e-09 63.9 47 63.8
vmacro11016 Vaccinium macrocarpon HOM05D000604 ORTHO05D004856 5.6e-09 63.5 44 70.5
Nn1g08459 Nelumbo nucifera HOM05D000604 ORTHO05D004856 7.3e-09 63.2 42 76.2
SMO301G0078 Selaginella moellendorffii HOM05D000604 ORTHO05D004856 7.3e-09 63.2 47 59.6
BcaC09g51398 Brassica carinata HOM05D000604 ORTHO05D004856 9.5e-09 62.8 47 66.0
C01p13560 Brassica napus HOM05D000604 ORTHO05D004856 9.5e-09 62.8 47 66.0
BolC1t01328H Brassica oleracea HOM05D000604 ORTHO05D004856 9.5e-09 62.8 47 66.0
BraA01t01094Z Brassica rapa HOM05D000604 ORTHO05D004856 9.5e-09 62.8 47 66.0
Pp3c7_9260 Physcomitrium patens HOM05D000604 ORTHO05D004856 1.2e-08 62.4 47 59.6
A01p11470 Brassica napus HOM05D000604 ORTHO05D004856 1.6e-08 62.0 47 66.0
CARHR207550 Cardamine hirsuta HOM05D000604 ORTHO05D004856 1.6e-08 62.0 47 66.0
FAN16G0408 Fragaria x ananassa HOM05D000604 ORTHO05D004856 2.1e-08 61.6 47 59.6
Mapoly0030s0107 Marchantia polymorpha HOM05D000604 ORTHO05D004856 2.1e-08 61.6 47 59.6
CBR_g33926 Chara braunii HOM05D000604 ORTHO05D004856 2.8e-08 61.2 47 61.7
FvH4_3g11840 Fragaria vesca HOM05D000604 ORTHO05D004856 6.1e-08 60.1 47 57.4
FAN21G2591 Fragaria x ananassa HOM05D000604 ORTHO05D004856 6.1e-08 60.1 47 57.4
RcHm_v2.0_Chr5g0019271 Rosa chinensis HOM05D000604 ORTHO05D004856 6.1e-08 60.1 47 57.4
FAN25G0854 Fragaria x ananassa HOM05D000604 ORTHO05D004856 1.8e-07 58.5 47 55.3
Medtr7g096260 Medicago truncatula HOM05D000604 ORTHO05D004856 4.0e-07 57.4 50 52.0
CANSAT35G1381 Cannabis sativa HOM05D000604 ORTHO05D004856 5.2e-07 57.0 45 60.0
Medtr7g094670 Medicago truncatula HOM05D001476 ORTHO05D002681 5.2e-07 57.0 50 54.0
Medtr7g094660 Medicago truncatula HOM05D000604 ORTHO05D004856 8.9e-07 56.2 50 56.0
CARHR226400 Cardamine hirsuta HOM05D000604 ORTHO05D004856 4.4e-06 53.9 42 59.5
MCO07G708 Micromonas commoda HOM05D000604 ORTHO05D004856 7.5e-06 53.1 45 55.6


User provided reference genes

Program Settings