Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M00098 Erythranthe guttata HOM05D003806 ORTHO05D004346 0.0e+00 1350.5 1291 100.0
MSTRG.6602 Avicennia marina HOM05D003806 ORTHO05D004346 1.0e-201 708.4 1326 55.8
MSTRG.14879 Avicennia marina HOM05D003806 ORTHO05D004346 3.7e-183 646.7 1311 56.3
Oeu003096.1 Olea europaea HOM05D003806 ORTHO05D004346 1.1e-126 459.1 1319 46.1
Actinidia28585 Actinidia chinensis HOM05D003806 ORTHO05D004346 9.2e-126 456.1 1334 46.5
Nitab4.5_0002232g0030 Nicotiana tabacum HOM05D003806 ORTHO05D004346 1.0e-124 452.6 1322 47.6
TWI60G0662 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 1.2e-122 445.7 1319 48.1
TWI34G1284 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 7.5e-120 436.4 1319 47.4
Lj1A1039T31 Lonicera japonica HOM05D003806 ORTHO05D004346 1.7e-116 425.2 1376 48.5
Prupe.3G186800 Prunus persica HOM05D003806 ORTHO05D004346 1.1e-115 422.5 1381 46.9
CSS0010582 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 4.0e-113 414.1 1332 45.5
Nitab4.5_0000170g0440 Nicotiana tabacum HOM05D003806 ORTHO05D004346 6.4e-111 406.8 1323 45.4
Dinv08951 Davidia involucrata HOM05D003806 ORTHO05D004346 8.7e-108 396.4 1344 43.4
Cfa023525 Carpinus fangiana HOM05D003806 ORTHO05D004346 2.1e-106 391.7 1385 38.5
SalBow7G1206 Salvia bowleyana HOM05D003806 ORTHO05D004346 1.7e-103 382.1 1334 55.5
Sabra16G0025500 Salix brachista HOM05D003806 ORTHO05D004346 4.6e-101 374.0 1334 41.2
Sabra16G0020700 Salix brachista HOM05D003806 ORTHO05D004346 7.8e-101 373.2 1334 41.2
TAR626G1670 Trochodendron aralioides HOM05D003806 ORTHO05D004346 5.1e-100 370.5 1395 43.9
vmacro08755 Vaccinium macrocarpon HOM05D003806 ORTHO05D004346 8.7e-100 369.8 1301 42.3
PGSC0003DMG400011753 Solanum tuberosum HOM05D003806 ORTHO05D004346 2.8e-98 364.8 708 40.4
Manes.09G072900 Manihot esculenta HOM05D003806 ORTHO05D004346 3.6e-98 364.4 1386 43.0
Haze_13639 Corylus avellana HOM05D003806 ORTHO05D004346 2.6e-96 358.2 1361 42.3
Cpa.g.sc8.294 Carica papaya HOM05D003806 ORTHO05D004346 4.5e-96 357.5 1249 37.8
CiPaw.04G076200 Carya illinoinensis HOM05D003806 ORTHO05D004346 4.9e-95 354.0 1064 34.1
Solyc07g043320.3 Solanum lycopersicum HOM05D003806 ORTHO05D004346 8.4e-95 353.2 1517 39.2
Peaxi162Scf00393g00413 Petunia axillaris HOM05D003806 ORTHO05D004346 4.2e-94 350.9 1315 49.0
MD09G1138500 Malus domestica HOM05D003806 ORTHO05D004346 2.7e-93 348.2 1385 43.9
Cc05_g00050 Coffea canephora HOM05D003806 ORTHO05D004346 1.3e-92 345.9 1323 39.7
Hma1.2p1_0401F.1_g144710 Hydrangea macrophylla HOM05D003806 ORTHO05D004346 8.7e-92 343.2 1305 42.8
Duzib138G1777 Durio zibethinus HOM05D003806 ORTHO05D004346 4.8e-90 337.4 1325 39.8
COL.COLO4_33757 Corchorus olitorius HOM05D003806 ORTHO05D004346 6.2e-90 337.0 1367 36.6
MD17G1128600 Malus domestica HOM05D003806 ORTHO05D004346 6.9e-89 333.6 1383 41.4
SGA_v2.0_scaffold73G24430 Striga asiatica HOM05D003806 ORTHO05D004346 4.5e-88 330.9 1327 44.8
Dinv09877 Davidia involucrata HOM05D003806 ORTHO05D004346 7.6e-88 330.1 624 43.6
Sopen07g022880 Solanum pennellii HOM05D003806 ORTHO05D004346 1.1e-83 316.2 1516 39.6
Rhsim12G0014400 Rhododendron simsii HOM05D003806 ORTHO05D004346 5.6e-83 313.9 1350 35.9
Ciclev10010914m.g Citrus clementina HOM05D003806 ORTHO05D004346 2.1e-82 312.0 1383 44.8
RcHm_v2.0_Chr2g0153621 Rosa chinensis HOM05D003806 ORTHO05D004346 4.8e-82 310.8 1370 41.2
FAN05G0560 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.4e-81 309.3 1374 42.4
VMungo1127G1373 Vigna mungo HOM05D003806 ORTHO05D004346 6.5e-79 300.4 1349 41.8
Sabra06G0014600 Salix brachista HOM05D003806 ORTHO05D004346 1.2e-77 296.2 1325 38.7
FvH4_6g39571 Fragaria vesca HOM05D003806 ORTHO05D004346 1.6e-77 295.8 1374 44.5
MBI02_g35832_MAGBIO Magnolia biondii HOM05D003806 ORTHO05D004346 1.8e-76 292.4 1556 35.3
Thecc.01G172500 Theobroma cacao HOM05D003806 ORTHO05D004346 3.0e-76 291.6 1380 35.6
QL04p061548 Quercus lobata HOM05D003806 ORTHO05D004346 1.3e-74 286.2 1386 39.1
Sed0016792 Sechium edule HOM05D003806 ORTHO05D004346 1.3e-74 286.2 1050 41.3
Potri.016G018700 Populus trichocarpa HOM05D003806 ORTHO05D004346 1.4e-73 282.7 1335 45.5
PGR031G3264 Punica granatum HOM05D003806 ORTHO05D004346 3.4e-72 278.1 1328 35.7
FAN09G2907 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.3e-71 276.2 1374 41.3
FAN02G2860 Fragaria x ananassa HOM05D003806 ORTHO05D004346 8.5e-71 273.5 1389 40.7
PSO541G2929 Papaver somniferum HOM05D003806 ORTHO05D004346 1.1e-70 273.1 1259 34.2
Aqoxy1G01455 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 4.2e-70 271.2 1362 34.4
PSO675G3405 Papaver somniferum HOM05D003806 ORTHO05D004346 1.0e-68 266.5 1040 42.8
Gorai.001G093100 Gossypium raimondii HOM05D003806 ORTHO05D004346 2.5e-67 261.9 620 43.5
Sabra06G0014700 Salix brachista HOM05D003806 ORTHO05D004346 7.4e-67 260.4 1325 36.8
Gohir.A07G081500 Gossypium hirsutum HOM05D003806 ORTHO05D004346 9.7e-67 260.0 618 42.2
Gohir.D07G087100 Gossypium hirsutum HOM05D003806 ORTHO05D004346 2.8e-66 258.5 620 42.1
Potri.006G021200 Populus trichocarpa HOM05D003806 ORTHO05D004346 2.8e-66 258.5 1331 43.4
DCAR_009841 Daucus carota HOM05D003806 ORTHO05D004346 4.8e-66 257.7 1049 34.6
Sabra06G0015000 Salix brachista HOM05D003806 ORTHO05D004346 8.2e-66 256.9 780 43.8
ClCG07G010910 Citrullus lanatus HOM05D003806 ORTHO05D004346 6.9e-65 253.8 1015 40.4
arahy.Tifrunner.gnm1.ann1.LI5V6E Arachis hypogaea HOM05D003806 ORTHO05D004346 7.2e-62 243.8 1368 38.0
Gohir.A11G156200 Gossypium hirsutum HOM05D003806 ORTHO05D004346 2.7e-61 241.9 585 37.6
Eucgr.A00904 Eucalyptus grandis HOM05D003806 ORTHO05D004346 5.1e-60 237.7 1365 37.1
GSVIVG01015817001 Vitis vinifera HOM05D003806 ORTHO05D004346 6.7e-60 237.3 1056 26.9
FAN14G1588 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.1e-59 236.5 1389 40.2
FAN14G4911 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.1e-59 236.5 1389 40.2
Atru.chr8.989 Acer truncatum HOM05D003806 ORTHO05D004346 7.4e-59 233.8 1467 33.2
Gohir.D11G163300 Gossypium hirsutum HOM05D003806 ORTHO05D004346 7.4e-59 233.8 580 34.1
Gorai.007G174000 Gossypium raimondii HOM05D003806 ORTHO05D004346 7.4e-59 233.8 580 34.1
CsaV3_4G007390 Cucumis sativus L. HOM05D003806 ORTHO05D004346 2.8e-58 231.9 1026 37.6
Duzib133G0409 Durio zibethinus HOM05D003806 ORTHO05D004346 1.1e-57 229.9 619 39.3
Phvul.011G024500 Phaseolus vulgaris HOM05D003806 ORTHO05D004346 9.1e-57 226.9 1369 41.5
CiPaw.03G113300 Carya illinoinensis HOM05D003806 ORTHO05D004346 3.5e-56 224.9 998 37.8
Ca_11242_v3 Cicer arietinum L. HOM05D003806 ORTHO05D004346 7.7e-56 223.8 620 44.0
Nn7g38253 Nelumbo nucifera HOM05D003806 ORTHO05D004346 5.0e-55 221.1 290 47.6
THA.LOC104800972 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 1.2e-53 216.5 1391 46.2
unitig_8.g4605 Utricularia gibba HOM05D001005 ORTHO05D000836 2.1e-53 215.7 656 43.4
arahy.Tifrunner.gnm1.ann1.TP1CMR Arachis hypogaea HOM05D003806 ORTHO05D004346 4.8e-50 204.5 1368 36.6
Psat7g179080 Pisum sativum HOM05D003806 ORTHO05D004346 4.8e-50 204.5 1370 43.6
CSS0042337 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 1.8e-49 202.6 702 32.6
Actinidia12514 Actinidia chinensis HOM05D003806 ORTHO05D004346 7.0e-49 200.7 291 46.7
Oeu021135.1 Olea europaea HOM05D003806 ORTHO05D004346 1.2e-48 199.9 370 57.8
Oeu048050.1 Olea europaea HOM05D003806 ORTHO05D004346 1.1e-46 193.4 205 56.6
Lj3g0015803 Lotus japonicus HOM05D003806 ORTHO05D004346 2.5e-46 192.2 1370 35.7
Lalb_Chr01g0001171 Lupinus albus HOM05D003806 ORTHO05D004346 7.2e-46 190.7 1372 38.9
Glyma.11G096400 Glycine max HOM05D003806 ORTHO05D004346 2.7e-45 188.7 1368 36.8
Lalb_Chr19g0139591 Lupinus albus HOM05D003806 ORTHO05D004346 4.7e-45 188.0 995 36.8
unitig_85.g27314 Utricularia gibba HOM05D003806 ORTHO05D004346 2.0e-43 182.6 557 44.7
Glyma.12G022500 Glycine max HOM05D003806 ORTHO05D004346 6.3e-42 177.6 1366 31.6
Sed0003037 Sechium edule HOM05D003806 ORTHO05D004346 2.2e-39 169.1 1048 38.6
THA.LOC104816049 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 2.9e-39 168.7 1370 32.1
TPR.G21252 Trifolium pratense HOM05D003806 ORTHO05D004346 5.0e-39 167.9 1368 35.9
CDE05G0051 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 6.1e-37 161.0 895 33.4
TAR624G1065 Trochodendron aralioides HOM05D003806 ORTHO05D004346 1.2e-35 156.8 675 36.6
HPP92_009459 Vanilla planifolia HOM05D003806 ORTHO05D004346 2.6e-35 155.6 1301 31.1
SGA_v2.0_scaffold181G39737 Striga asiatica HOM05D003806 ORTHO05D004346 1.3e-34 153.3 197 55.8
Medtr4g076030 Medicago truncatula HOM05D003806 ORTHO05D004346 8.3e-34 150.6 1350 35.4
Aqoxy7G02954 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 2.4e-33 149.1 516 30.6
ECA246G1737 Erigeron canadensis HOM05D003806 ORTHO05D004346 5.9e-32 144.4 568 33.8
CANSAT64G1444 Cannabis sativa HOM05D003806 ORTHO05D004346 5.5e-30 137.9 1389 34.9
MELO3C016203.2 Cucumis melo HOM05D003806 ORTHO05D004346 7.2e-30 137.5 1026 38.0
CDE02G3965 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 1.6e-29 136.3 861 33.2
Lsat_1_v5_gn_3_34740 Lactuca sativa HOM05D003806 ORTHO05D004346 3.7e-26 125.2 1336 34.2
Actinidia12513 Actinidia chinensis HOM05D003806 ORTHO05D004346 2.7e-24 119.0 260 36.2
HanXRQChr17g0541141 Helianthus annuus HOM05D003806 ORTHO05D004346 5.0e-23 114.8 728 37.8
Os04g0614650 Oryza sativa ssp. japonica HOM05D003806 ORTHO05D004346 6.6e-23 114.4 362 29.3
AT1G05320 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 1.8e-20 106.3 582 25.8
Carub.0001s0463 Capsella rubella HOM05D003806 ORTHO05D004346 4.0e-20 105.1 591 28.4
CARHR126030 Cardamine hirsuta HOM05D003806 ORTHO05D004346 1.2e-19 103.6 616 30.8
EL10Ac2g03814 Beta vulgaris HOM05D003806 ORTHO05D004346 2.9e-18 99.0 415 27.7
Aa31LG5G4290 Aethionema arabicum HOM05D003806 ORTHO05D004346 1.9e-17 96.3 982 41.3
Aa31LG1G19290 Aethionema arabicum HOM05D003806 ORTHO05D004346 3.5e-16 92.0 160 40.6
Aa31LG1G19380 Aethionema arabicum HOM05D003806 ORTHO05D004346 3.5e-16 92.0 160 40.6
Actinidia31596 Actinidia chinensis HOM05D003806 ORTHO05D004346 7.8e-16 90.9 148 46.6
HanXRQChr06g0171661 Helianthus annuus HOM05D003806 ORTHO05D004346 7.8e-16 90.9 132 49.2
BraA05t20242Z Brassica rapa HOM05D003806 ORTHO05D004346 2.3e-15 89.4 195 45.6
C04p17390 Brassica napus HOM05D003806 ORTHO05D004346 3.0e-15 89.0 195 37.4
DCAR_013337 Daucus carota HOM05D003806 ORTHO05D004346 6.6e-15 87.8 564 25.7
AUR62020559 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.5e-14 86.7 240 30.4
A05p13020 Brassica napus HOM05D003806 ORTHO05D004346 2.5e-14 85.9 195 45.6
Hund19432 Selenicereus undatus HOM05D003806 ORTHO05D004346 2.5e-14 85.9 307 29.0
AUR62020563 Chenopodium quinoa HOM05D003806 ORTHO05D004346 3.3e-14 85.5 240 30.4
BcaC01g05916 Brassica carinata HOM05D003806 ORTHO05D004346 4.3e-14 85.1 195 47.2
BcaC02g11341 Brassica carinata HOM05D003806 ORTHO05D001704 9.5e-14 84.0 601 29.0
A03p18080 Brassica napus HOM05D003806 ORTHO05D004346 2.3e-12 79.3 200 44.5
Zm00001eb070840 Zea mays HOM05D003806 ORTHO05D004346 8.9e-12 77.4 219 29.7
Ah.11g044370 Amaranthus hybridus HOM05D003806 ORTHO05D004346 2.6e-11 75.9 88 46.6
AUR62009108 Chenopodium quinoa HOM05D003806 ORTHO05D004346 7.5e-11 74.3 253 27.7
Sc23g0004300 Simmondsia chinensis HOM05D003806 ORTHO05D004346 7.5e-11 74.3 245 27.8
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 9.8e-11 73.9 186 36.0
Oeu030768.1 Olea europaea HOM05D003806 ORTHO05D004346 9.8e-11 73.9 86 58.1
BraA03t11067Z Brassica rapa HOM05D003806 ORTHO05D004346 1.7e-10 73.2 238 39.1
AL1G15120 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 2.2e-10 72.8 557 29.4
Actinidia31597 Actinidia chinensis HOM05D003806 ORTHO05D004346 2.9e-10 72.4 157 49.7
Sp4g14610 Schrenkiella parvula HOM05D003806 ORTHO05D004346 3.7e-10 72.0 440 36.1
unitig_85.g27313 Utricularia gibba HOM05D003806 ORTHO05D004346 4.1e-09 68.6 299 30.1
AL4G27610 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 9.2e-09 67.4 616 27.6
Peaxi162Scf00141g01119 Petunia axillaris HOM05D001948 ORTHO05D001873 4.6e-08 65.1 96 45.8
CANSAT64G1938 Cannabis sativa HOM05D003806 ORTHO05D004346 1.3e-07 63.5 253 37.5
C03p21110 Brassica napus HOM05D003806 ORTHO05D004346 1.7e-07 63.2 195 42.6
BolC3t14493H Brassica oleracea HOM05D003806 ORTHO05D004346 1.7e-07 63.2 195 42.6
AUR62043987 Chenopodium quinoa HOM05D003806 ORTHO05D004346 2.3e-07 62.8 487 23.6
Sp1g04190 Schrenkiella parvula HOM05D003806 ORTHO05D004346 5.1e-07 61.6 434 26.3
AUR62043599 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.9e-06 59.7 248 26.6
Carub.0004s1356 Capsella rubella HOM05D003806 ORTHO05D004346 5.6e-06 58.2 200 40.5
Dinv29619 Davidia involucrata HOM05D003806 ORTHO05D004346 9.5e-06 57.4 50 60.0
Thhalv10006865m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 9.5e-06 57.4 61 47.5


User provided reference genes

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