Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M00071 Erythranthe guttata HOM05D003673 ORTHO05D004764 2.4e-268 928.3 494 100.0
MSTRG.14903 Avicennia marina HOM05D003673 ORTHO05D004764 7.6e-214 747.3 484 77.1
SalBow1G2057 Salvia bowleyana HOM05D003673 ORTHO05D004764 3.0e-202 708.8 489 74.4
SGA_v2.0_scaffold73G24479 Striga asiatica HOM05D003673 ORTHO05D004764 5.1e-202 708.0 417 81.8
Nitab4.5_0002201g0040 Nicotiana tabacum HOM05D003673 ORTHO05D004764 3.3e-193 678.7 444 75.7
Nitab4.5_0000006g0440 Nicotiana tabacum HOM05D003673 ORTHO05D004764 4.4e-193 678.3 444 75.9
Peaxi162Scf00416g00004 Petunia axillaris HOM05D003673 ORTHO05D004764 2.4e-191 672.5 424 77.8
Oeu051389.1 Olea europaea HOM05D003673 ORTHO05D004764 3.1e-191 672.2 424 76.9
CAN.G7.15 Capsicum annuum HOM05D003673 ORTHO05D004764 4.2e-188 661.8 419 77.3
PGSC0003DMG400017707 Solanum tuberosum HOM05D003673 ORTHO05D004764 4.7e-187 658.3 419 77.3
arahy.Tifrunner.gnm1.ann1.FDUH0H Arachis hypogaea HOM05D003673 ORTHO05D004764 1.4e-186 656.8 429 77.2
arahy.Tifrunner.gnm1.ann1.I7WXBP Arachis hypogaea HOM05D003673 ORTHO05D004764 1.4e-186 656.8 429 77.2
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 5.2e-186 654.8 396 81.6
Sopen05g024810 Solanum pennellii HOM05D003673 ORTHO05D004764 5.2e-186 654.8 426 75.6
Sopen07g023610 Solanum pennellii HOM05D003673 ORTHO05D004764 8.8e-186 654.1 424 76.9
Thecc.01G168600 Theobroma cacao HOM05D003673 ORTHO05D004764 3.3e-185 652.1 430 77.0
Manes.02G088900 Manihot esculenta HOM05D003673 ORTHO05D004764 5.7e-185 651.4 438 74.9
PGR042G2748 Punica granatum HOM05D003673 ORTHO05D004764 5.7e-185 651.4 427 75.9
LjContig00049g0013493 Lotus japonicus HOM05D003673 ORTHO05D004764 1.3e-184 650.2 421 75.8
PGSC0003DMG400017420 Solanum tuberosum HOM05D003673 ORTHO05D004764 1.3e-184 650.2 423 76.4
COL.COLO4_38400 Corchorus olitorius HOM05D003673 ORTHO05D004764 1.7e-184 649.8 429 76.2
HanXRQChr14g0451901 Helianthus annuus HOM05D003673 ORTHO05D004764 2.2e-184 649.4 430 74.7
ClCG11G016540 Citrullus lanatus HOM05D003673 ORTHO05D004764 2.8e-184 649.0 436 74.5
Ciclev10031587m.g Citrus clementina HOM05D003673 ORTHO05D004764 4.8e-184 648.3 417 77.7
Medtr5g091060 Medicago truncatula HOM05D003673 ORTHO05D004764 4.8e-184 648.3 422 76.8
Ca_06264_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 6.3e-184 647.9 421 76.0
Ca_30265_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 6.3e-184 647.9 421 76.0
FAN14G2563 Fragaria x ananassa HOM05D003673 ORTHO05D004764 1.1e-183 647.1 421 77.7
DCAR_023045 Daucus carota HOM05D003673 ORTHO05D004764 1.4e-183 646.7 428 75.5
FvH4_6g38670 Fragaria vesca HOM05D003673 ORTHO05D004764 1.4e-183 646.7 421 77.7
FAN02G0649 Fragaria x ananassa HOM05D003673 ORTHO05D004764 1.4e-183 646.7 424 76.9
Solyc07g045050.3 Solanum lycopersicum HOM05D003673 ORTHO05D004764 1.8e-183 646.4 424 76.2
EL10Ac9g22832 Beta vulgaris HOM05D003673 ORTHO05D004764 5.3e-183 644.8 416 74.0
Sabra02G0046800 Salix brachista HOM05D003673 ORTHO05D004764 5.3e-183 644.8 431 74.5
CiPaw.03G191900 Carya illinoinensis HOM05D003673 ORTHO05D004764 9.1e-183 644.0 438 73.7
FAN09G3261 Fragaria x ananassa HOM05D003673 ORTHO05D004764 9.1e-183 644.0 424 76.4
unitig_899.g15456 Utricularia gibba HOM05D003673 ORTHO05D004764 1.2e-182 643.7 421 75.1
FAN05G2105 Fragaria x ananassa HOM05D003673 ORTHO05D004764 2.7e-182 642.5 423 76.4
Potri.002G057400 Populus trichocarpa HOM05D003673 ORTHO05D004764 5.9e-182 641.3 431 73.8
TPR.G10168 Trifolium pratense HOM05D003673 ORTHO05D004764 5.9e-182 641.3 430 74.4
ECA238G4715 Erigeron canadensis HOM05D003673 ORTHO05D004764 7.7e-182 641.0 423 73.8
QL08p044989 Quercus lobata HOM05D003673 ORTHO05D004764 6.5e-181 637.9 424 74.1
Gorai.001G092000 Gossypium raimondii HOM05D003673 ORTHO05D004764 8.5e-181 637.5 425 75.5
Eucgr.A02022 Eucalyptus grandis HOM05D003673 ORTHO05D004764 1.1e-180 637.1 429 73.0
Gohir.D07G086000 Gossypium hirsutum HOM05D003673 ORTHO05D004764 1.9e-180 636.3 425 75.5
Sed0005423 Sechium edule HOM05D003673 ORTHO05D004764 1.9e-180 636.3 435 73.3
Cpa.g.sc50.111 Carica papaya HOM05D003673 ORTHO05D004764 2.5e-180 636.0 421 75.1
vmacro04781 Vaccinium macrocarpon HOM05D003673 ORTHO05D004764 2.5e-180 636.0 428 73.6
BolC5t29254H Brassica oleracea HOM05D003673 ORTHO05D004764 7.2e-180 634.4 430 75.3
Cfa023358 Carpinus fangiana HOM05D003673 ORTHO05D004764 1.6e-179 633.3 429 73.4
AUR62017589 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.6e-179 633.3 430 70.9
MELO3C022961.2 Cucumis melo HOM05D003673 ORTHO05D004764 1.6e-179 633.3 436 71.8
Gohir.A07G080400 Gossypium hirsutum HOM05D003673 ORTHO05D004764 1.6e-179 633.3 425 75.3
A10p05210 Brassica napus HOM05D003673 ORTHO05D004764 2.7e-179 632.5 430 75.1
Sc19g0001760 Simmondsia chinensis HOM05D003673 ORTHO05D004764 3.6e-179 632.1 469 68.0
Ah.01g013590 Amaranthus hybridus HOM05D003673 ORTHO05D004764 4.7e-179 631.7 420 72.6
BcaNung07075 Brassica carinata HOM05D003673 ORTHO05D004764 4.7e-179 631.7 430 75.1
Haze_13556 Corylus avellana HOM05D003673 ORTHO05D004764 4.7e-179 631.7 429 73.0
Rhsim07G0197900 Rhododendron simsii HOM05D003673 ORTHO05D004764 4.7e-179 631.7 429 72.5
AUR62015128 Chenopodium quinoa HOM05D003673 ORTHO05D004764 6.1e-179 631.3 431 70.1
CsaV3_4G032000 Cucumis sativus L. HOM05D003673 ORTHO05D004764 8.0e-179 630.9 436 71.3
C05p04810 Brassica napus HOM05D003673 ORTHO05D004764 1.0e-178 630.6 430 74.7
BraA10t42788Z Brassica rapa HOM05D003673 ORTHO05D004764 1.4e-178 630.2 430 74.9
TWI59G0698 Tripterygium wilfordii HOM05D003673 ORTHO05D004764 2.3e-178 629.4 435 72.4
CANSAT64G0060 Cannabis sativa HOM05D003673 ORTHO05D004764 4.0e-178 628.6 426 73.2
Dinv07706 Davidia involucrata HOM05D003673 ORTHO05D004764 4.0e-178 628.6 437 72.1
Nn7g37943 Nelumbo nucifera HOM05D003673 ORTHO05D004764 8.8e-178 627.5 426 73.7
Prupe.3G177700 Prunus persica HOM05D003673 ORTHO05D004764 8.8e-178 627.5 429 72.7
RcHm_v2.0_Chr2g0152131 Rosa chinensis HOM05D003673 ORTHO05D004764 8.8e-178 627.5 421 74.6
CSS0042622 Camellia sinensis var. sinensis HOM05D003673 ORTHO05D004764 1.2e-177 627.1 428 74.3
Carub.0001s0594 Capsella rubella HOM05D003673 ORTHO05D004764 2.0e-177 626.3 423 74.5
Hma1.2p1_0033F.1_g021200 Hydrangea macrophylla HOM05D003673 ORTHO05D004764 2.0e-177 626.3 428 73.4
MD17G1134800 Malus domestica HOM05D003673 ORTHO05D004764 3.4e-177 625.5 430 73.0
Thhalv10007634m.g Eutrema salsugineum HOM05D003673 ORTHO05D004764 4.4e-177 625.2 423 74.7
Sp1g05330 Schrenkiella parvula HOM05D003673 ORTHO05D004764 4.4e-177 625.2 447 71.8
AL1G16600 Arabidopsis lyrata HOM05D003673 ORTHO05D004764 7.5e-177 624.4 431 74.0
VMungo0647G2026 Vigna mungo HOM05D003673 ORTHO05D004764 7.5e-177 624.4 435 72.2
Aa31LG1G7910 Aethionema arabicum HOM05D003673 ORTHO05D004764 2.2e-176 622.9 430 73.3
A09p66930 Brassica napus HOM05D003673 ORTHO05D004764 2.2e-176 622.9 444 73.2
Glyma.14G030400 Glycine max HOM05D003673 ORTHO05D004764 6.3e-176 621.3 426 72.1
Hund22282 Selenicereus undatus HOM05D003673 ORTHO05D004764 1.1e-175 620.5 426 71.1
Lalb_Chr04g0248921 Lupinus albus HOM05D003673 ORTHO05D004764 3.1e-175 619.0 424 71.9
Psat2g017880 Pisum sativum HOM05D003673 ORTHO05D004764 3.1e-175 619.0 430 72.1
BcaC07g42060 Brassica carinata HOM05D003673 ORTHO05D004764 1.2e-174 617.1 426 73.2
THA.LOC104815838 Tarenaya hassleriana HOM05D003673 ORTHO05D004764 3.5e-174 615.5 434 72.1
C08p51160 Brassica napus HOM05D003673 ORTHO05D004764 4.5e-174 615.1 428 73.8
BolC8t52642H Brassica oleracea HOM05D003673 ORTHO05D004764 4.5e-174 615.1 428 73.8
Phvul.008G194300 Phaseolus vulgaris HOM05D003673 ORTHO05D004764 4.5e-174 615.1 434 70.7
Medtr5g090990 Medicago truncatula HOM05D003673 ORTHO05D004764 1.0e-173 614.0 429 72.7
BraA09t42028Z Brassica rapa HOM05D003673 ORTHO05D004764 2.9e-173 612.5 453 71.3
CANSAT64G2396 Cannabis sativa HOM05D003673 ORTHO05D004764 1.1e-172 610.5 425 72.2
Eucgr.A02024 Eucalyptus grandis HOM05D003673 ORTHO05D004764 1.9e-172 609.8 434 69.1
TAR626G0427 Trochodendron aralioides HOM05D003673 ORTHO05D004764 5.5e-172 608.2 420 72.4
Aqoxy1G01891 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 8.0e-171 604.4 427 71.2
Eucgr.A02023 Eucalyptus grandis HOM05D003673 ORTHO05D004764 6.8e-170 601.3 434 68.4
Aqoxy1G01890 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 9.8e-169 597.4 425 68.9
Medtr1g022325 Medicago truncatula HOM05D003673 ORTHO05D004764 9.8e-169 597.4 429 71.1
PSO675G0095 Papaver somniferum HOM05D003673 ORTHO05D004764 2.8e-168 595.9 423 68.6
EL10Ac9g22831 Beta vulgaris HOM05D003673 ORTHO05D004764 1.4e-167 593.6 402 71.4
MBI18_g13605_MAGBIO Magnolia biondii HOM05D003673 ORTHO05D004764 4.1e-167 592.0 454 66.7
CDE05G0951 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 5.9e-166 588.2 431 68.2
BcaB02g06780 Brassica carinata HOM05D003673 ORTHO05D004764 8.6e-165 584.3 426 71.4
COL.COLO4_38402 Corchorus olitorius HOM05D003673 ORTHO05D004764 4.4e-161 572.0 417 67.6
PSO675G5654 Papaver somniferum HOM05D003673 ORTHO05D004764 1.5e-156 557.0 423 65.5
CANSAT64G0777 Cannabis sativa HOM05D003673 ORTHO05D004764 1.2e-153 547.4 421 65.6
Lsat_1_v5_gn_2_96721 Lactuca sativa HOM05D003673 ORTHO05D004764 2.2e-152 543.1 383 70.5
SEGI_30126 Sequoiadendron giganteum HOM05D003673 ORTHO05D004764 8.3e-152 541.2 423 65.0
Lsat_1_v5_gn_6_42781 Lactuca sativa HOM05D003673 ORTHO05D004764 3.5e-150 535.8 445 60.2
Dinv07089 Davidia involucrata HOM05D003673 ORTHO05D004764 3.9e-149 532.3 387 70.0
Mapoly0126s0038 Marchantia polymorpha HOM05D003673 ORTHO05D004764 4.3e-148 528.9 425 61.9
RcHm_v2.0_Chr2g0152141 Rosa chinensis HOM05D003673 ORTHO05D004764 3.6e-147 525.8 371 70.9
CARHR006180 Cardamine hirsuta HOM05D003673 ORTHO05D004764 6.2e-147 525.0 396 68.7
Pp3c1_27020 Physcomitrium patens HOM05D003673 ORTHO05D004764 3.1e-146 522.7 418 63.9
AT1G06570 Arabidopsis thaliana HOM05D003673 ORTHO05D004764 8.9e-146 521.2 376 71.0
Zm00001eb232960 Zea mays HOM05D003673 ORTHO05D004764 1.2e-145 520.8 420 63.6
CDE02G2922 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 2.6e-145 519.6 430 64.4
AagrBONN_evm.TU.Sc2ySwM_368.1457 Anthoceros agrestis HOM05D003673 ORTHO05D004764 4.4e-145 518.8 417 63.8
Pp3c2_15470 Physcomitrium patens HOM05D003673 ORTHO05D004764 4.4e-145 518.8 419 63.2
PSO144G0168 Papaver somniferum HOM05D003673 ORTHO05D004764 1.4e-143 513.8 422 61.8
HPP92_002268 Vanilla planifolia HOM05D003673 ORTHO05D004764 7.8e-142 508.1 397 65.7
PSO170G5322 Papaver somniferum HOM05D003673 ORTHO05D004764 1.7e-141 506.9 423 60.3
HanXRQChr02g0055101 Helianthus annuus HOM05D003673 ORTHO05D004764 6.6e-141 505.0 414 61.8
PSO210G5105 Papaver somniferum HOM05D003673 ORTHO05D004764 1.9e-140 503.4 429 59.0
Actinidia24401 Actinidia chinensis HOM05D003673 ORTHO05D004764 2.5e-140 503.1 423 63.1
PSO210G1881 Papaver somniferum HOM05D003673 ORTHO05D004764 5.8e-137 491.9 422 59.2
Thecc.01G168800 Theobroma cacao HOM05D003673 ORTHO05D004764 2.9e-136 489.6 436 60.3
PSO210G6115 Papaver somniferum HOM05D003673 ORTHO05D004764 1.4e-135 487.3 423 58.6
Cre09.g399030 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 3.6e-131 472.6 424 59.2
SMO358G0369 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 1.3e-128 464.2 425 57.9
PRCOL_00001771 Prasinoderma coloniale HOM05D003673 ORTHO05D004764 2.2e-128 463.4 447 54.4
CBR_g41741 Chara braunii HOM05D003673 ORTHO05D004764 3.8e-128 462.6 445 54.4
Lj8C8T1 Lonicera japonica HOM05D003673 ORTHO05D004764 4.2e-127 459.1 332 70.8
Cre09.g398993 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 7.1e-127 458.4 434 56.2
CBR_g46667 Chara braunii HOM05D003673 ORTHO05D004764 9.3e-127 458.0 443 54.0
CBR_g8495 Chara braunii HOM05D003673 ORTHO05D004764 1.7e-125 453.8 445 53.0
ECA233G6193 Erigeron canadensis HOM05D003673 ORTHO05D004764 7.3e-124 448.4 365 61.6
Solyc05g041200.4 Solanum lycopersicum HOM05D003673 ORTHO05D004764 1.4e-122 444.1 347 66.0
AagrBONN_evm.TU.Sc2ySwM_368.1545 Anthoceros agrestis HOM05D003673 ORTHO05D004764 1.8e-122 443.7 413 56.7
Glyma.02G284600 Glycine max HOM05D003673 ORTHO05D004764 3.8e-120 436.0 345 64.1
Potri.005G205200 Populus trichocarpa HOM05D003673 ORTHO05D004764 2.1e-118 430.3 429 55.2
MCO11G070 Micromonas commoda HOM05D003673 ORTHO05D004764 1.3e-117 427.6 430 54.4
Zm00001eb304950 Zea mays HOM05D003673 ORTHO05D004764 4.8e-115 419.1 410 54.4
Ah.02g114000 Amaranthus hybridus HOM05D003673 ORTHO05D004764 1.7e-112 410.6 371 56.6
Medtr5g090980 Medicago truncatula HOM05D003673 ORTHO05D004764 2.1e-110 403.7 374 59.4
SMO118G0557 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 9.6e-108 394.8 435 49.2
ATR0763G164 Amborella trichopoda HOM05D003673 ORTHO05D004764 9.0e-106 388.3 276 68.1
TPR.G25540 Trifolium pratense HOM05D003673 ORTHO05D004764 1.7e-104 384.0 419 49.6
MD09G1148400 Malus domestica HOM05D003673 ORTHO05D004764 7.4e-100 368.6 383 56.4
Os02g0168100 Oryza sativa ssp. japonica HOM05D003673 ORTHO05D004764 9.0e-98 361.7 227 74.0
MD13G1156600 Malus domestica HOM05D003673 ORTHO05D004764 1.1e-92 344.7 374 50.3
arahy.Tifrunner.gnm1.ann1.KE2YGW Arachis hypogaea HOM05D003673 ORTHO05D004764 4.8e-91 339.3 378 55.0
AUR62016194 Chenopodium quinoa HOM05D003673 ORTHO05D004764 4.4e-84 316.2 300 55.0
Atru.chr6.2046 Acer truncatum HOM05D003673 ORTHO05D004764 1.3e-83 314.7 166 88.6
arahy.Tifrunner.gnm1.ann1.3I6JIA Arachis hypogaea HOM05D003673 ORTHO05D004764 7.7e-73 278.9 239 64.0
Thecc.01G169100 Theobroma cacao HOM05D003673 ORTHO05D004764 1.0e-69 268.5 249 59.4
AUR62039301 Chenopodium quinoa HOM05D003673 ORTHO05D004764 7.0e-66 255.8 203 59.1
AUR62044533 Chenopodium quinoa HOM05D003673 ORTHO05D004764 7.0e-66 255.8 203 59.1
AUR62035118 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.0e-64 251.9 198 60.1
AUR62039293 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.0e-64 251.9 198 60.1
AUR62039297 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.0e-64 251.9 198 60.1
Cc05_g01440 Coffea canephora HOM05D003673 ORTHO05D004764 5.2e-53 213.0 109 93.6
AUR62035117 Chenopodium quinoa HOM05D003673 ORTHO05D017143 1.5e-52 211.5 207 56.0
AUR62039294 Chenopodium quinoa HOM05D003673 ORTHO05D017143 1.5e-52 211.5 207 56.0
AUR62039298 Chenopodium quinoa HOM05D003673 ORTHO05D017143 1.5e-52 211.5 207 56.0
GSVIVG01020837001 Vitis vinifera HOM05D003673 ORTHO05D004764 1.6e-49 201.4 104 88.5
FvH4_5g31130 Fragaria vesca HOM05D003673 ORTHO05D004764 2.1e-38 164.5 88 86.4
FAN18G0200 Fragaria x ananassa HOM05D003673 ORTHO05D004764 2.3e-37 161.0 88 84.1
Atru.chr6.2045 Acer truncatum HOM05D003673 ORTHO05D017143 2.2e-35 154.5 102 72.5
AUR62044532 Chenopodium quinoa HOM05D003673 ORTHO05D017143 1.6e-33 148.3 122 63.9
Cfa023357 Carpinus fangiana HOM05D003673 ORTHO05D017143 1.3e-32 145.2 104 72.1
MD05G1024200 Malus domestica HOM05D003673 ORTHO05D004764 9.5e-31 139.0 76 81.6
Haze_25279 Corylus avellana HOM05D003673 ORTHO05D004764 2.8e-30 137.5 162 48.1
Dinv42661 Davidia involucrata HOM05D002888 ORTHO05D003321 3.1e-29 134.0 117 62.4
COL.COLO4_38401 Corchorus olitorius HOM05D003673 ORTHO05D004764 2.1e-25 121.3 148 48.0
COL.COLO4_20758 Corchorus olitorius HOM05D003673 ORTHO05D004764 2.3e-24 117.9 71 77.5
ATR0763G191 Amborella trichopoda HOM05D003673 ORTHO05D017143 4.3e-23 113.6 109 56.0
GSVIVG01013079001 Vitis vinifera HOM05D003673 ORTHO05D004764 2.1e-22 111.3 64 76.6
AUR62039302 Chenopodium quinoa HOM05D003673 ORTHO05D017143 2.8e-22 110.9 135 53.3
TPR.G10161 Trifolium pratense HOM05D003673 ORTHO05D004764 1.8e-21 108.2 55 89.1
CARHR006190 Cardamine hirsuta HOM05D003673 ORTHO05D004764 2.4e-21 107.8 56 92.9
Dinv21956 Davidia involucrata HOM05D003673 ORTHO05D004764 1.1e-15 89.0 98 55.1
Lj8C8T3 Lonicera japonica HOM05D003673 ORTHO05D004764 5.3e-13 80.1 39 92.3
COL.COLO4_19675 Corchorus olitorius HOM05D003673 ORTHO05D163473 2.6e-12 77.8 45 73.3
MD05G1024100 Malus domestica HOM05D003673 ORTHO05D017143 2.1e-09 68.2 39 71.8
FAN21G3810 Fragaria x ananassa HOM05D003673 ORTHO05D025527 1.3e-08 65.5 133 38.3
FAN18G2996 Fragaria x ananassa HOM05D003673 ORTHO05D025527 1.5e-07 62.0 133 37.6
FAN25G1183 Fragaria x ananassa HOM05D003673 ORTHO05D025527 7.3e-07 59.7 123 39.0


User provided reference genes

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