Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L01900 Erythranthe guttata HOM05D004854 ORTHO05D005854 4.3e-25 118.2 61 100.0
MSTRG.26532 Avicennia marina HOM05D004854 ORTHO05D005854 1.1e-20 103.6 61 85.2
Migut.J00819 Erythranthe guttata HOM05D004854 ORTHO05D005854 1.1e-20 103.6 61 82.0
SGA_v2.0_scaffold41G15867 Striga asiatica HOM05D004854 ORTHO05D005854 1.4e-20 103.2 61 85.2
Dinv25401 Davidia involucrata HOM05D004854 ORTHO05D005854 3.2e-20 102.1 61 83.6
SGA_v2.0_scaffold21G09635 Striga asiatica HOM05D004854 ORTHO05D005854 4.2e-20 101.7 61 83.6
Nitab4.5_0000074g0010 Nicotiana tabacum HOM05D004854 ORTHO05D005854 5.5e-20 101.3 61 82.0
Nitab4.5_0012849g0010 Nicotiana tabacum HOM05D004854 ORTHO05D005854 5.5e-20 101.3 61 82.0
Peaxi162Scf00324g00719 Petunia axillaris HOM05D004854 ORTHO05D005854 7.2e-20 100.9 61 82.0
Dinv26446 Davidia involucrata HOM05D004854 ORTHO05D005854 1.2e-19 100.1 61 82.0
PGSC0003DMG400008513 Solanum tuberosum HOM05D004854 ORTHO05D005854 1.6e-19 99.8 61 80.3
Dinv25400 Davidia involucrata HOM05D004854 ORTHO05D005854 3.6e-19 98.6 61 80.3
CDE05G0266 Ceratophyllum demersum HOM05D000177 ORTHO05D008165 4.6e-19 98.2 61 78.7
CDE05G2165 Ceratophyllum demersum HOM05D004854 ORTHO05D005854 4.6e-19 98.2 61 78.7
Solyc07g009330.4 Solanum lycopersicum HOM05D004854 ORTHO05D005854 4.6e-19 98.2 61 78.7
CANSAT11G1984 Cannabis sativa HOM05D004854 ORTHO05D005854 6.1e-19 97.8 61 80.3
vmacro20836 Vaccinium macrocarpon HOM05D004854 ORTHO05D005854 7.9e-19 97.4 61 78.7
Oeu044703.1 Olea europaea HOM05D004854 ORTHO05D005854 1.0e-18 97.1 61 80.3
Rhsim01G0120500 Rhododendron simsii HOM05D004854 ORTHO05D005854 1.0e-18 97.1 61 78.7
SalBow5G3614 Salvia bowleyana HOM05D004854 ORTHO05D005854 1.4e-18 96.7 60 85.0
Sopen07g005080 Solanum pennellii HOM05D004854 ORTHO05D005854 1.4e-18 96.7 61 77.0
CSS0022850 Camellia sinensis var. sinensis HOM05D004854 ORTHO05D005854 1.8e-18 96.3 61 77.0
MBI13_g31550_MAGBIO Magnolia biondii HOM05D004854 ORTHO05D005854 1.8e-18 96.3 61 78.7
Oeu044701.1 Olea europaea HOM05D004854 ORTHO05D005854 1.8e-18 96.3 61 80.3
Oeu064534.1 Olea europaea HOM05D004854 ORTHO05D005854 1.8e-18 96.3 61 78.7
GSVIVG01010910001 Vitis vinifera HOM05D004854 ORTHO05D005854 2.3e-18 95.9 61 73.8
Eucgr.C02261 Eucalyptus grandis HOM05D004854 ORTHO05D005854 3.0e-18 95.5 61 77.0
Eucgr.C02263 Eucalyptus grandis HOM05D004854 ORTHO05D005854 3.0e-18 95.5 61 77.0
Oeu000974.1 Olea europaea HOM05D004854 ORTHO05D005854 3.9e-18 95.1 61 77.0
Actinidia39348 Actinidia chinensis HOM05D000406 ORTHO05D003425 5.1e-18 94.7 61 75.4
QL11p004841 Quercus lobata HOM05D004854 ORTHO05D005854 5.1e-18 94.7 61 75.4
Actinidia29956 Actinidia chinensis HOM05D004854 ORTHO05D005854 6.7e-18 94.4 61 73.8
Cc06_g22110 Coffea canephora HOM05D004854 ORTHO05D005854 6.7e-18 94.4 61 75.4
AL7G27120 Arabidopsis lyrata HOM05D004854 ORTHO05D005854 8.8e-18 94.0 61 78.7
Cfa013427 Carpinus fangiana HOM05D004854 ORTHO05D005854 8.8e-18 94.0 61 75.4
PGR044G2628 Punica granatum HOM05D004854 ORTHO05D005854 8.8e-18 94.0 61 75.4
PGR109G0004 Punica granatum HOM05D004854 ORTHO05D005854 8.8e-18 94.0 61 75.4
Potri.009G032600 Populus trichocarpa HOM05D004854 ORTHO05D005854 1.1e-17 93.6 62 77.4
TAR625G0051 Trochodendron aralioides HOM05D004854 ORTHO05D005854 1.1e-17 93.6 61 75.4
TAR636G3485 Trochodendron aralioides HOM05D004854 ORTHO05D005854 1.1e-17 93.6 60 75.0
CAN.G86.2 Capsicum annuum HOM05D004854 ORTHO05D005854 1.9e-17 92.8 61 75.4
HanXRQChr10g0297881 Helianthus annuus HOM05D004854 ORTHO05D005854 1.9e-17 92.8 60 76.7
MSTRG.19386 Avicennia marina HOM05D004854 ORTHO05D005854 2.5e-17 92.4 61 75.4
Atru.chr12.1305 Acer truncatum HOM05D004854 ORTHO05D005854 3.3e-17 92.0 61 70.5
Eucgr.A01410 Eucalyptus grandis HOM05D004854 ORTHO05D005854 3.3e-17 92.0 61 73.8
ATR0626G247 Amborella trichopoda HOM05D004854 ORTHO05D005854 4.3e-17 91.7 61 77.0
AL8G33260 Arabidopsis lyrata HOM05D004854 ORTHO05D005854 4.3e-17 91.7 61 73.8
BcaB05g22334 Brassica carinata HOM05D004854 ORTHO05D005854 4.3e-17 91.7 61 73.8
BcaC04g19981 Brassica carinata HOM05D004854 ORTHO05D005854 4.3e-17 91.7 61 73.8
BolC9t57762H Brassica oleracea HOM05D004854 ORTHO05D005854 4.3e-17 91.7 61 73.8
BraA10t43555Z Brassica rapa HOM05D004854 ORTHO05D005854 4.3e-17 91.7 61 73.8
Sp7g23910 Schrenkiella parvula HOM05D004854 ORTHO05D005854 4.3e-17 91.7 61 73.8
Sed0005886 Sechium edule HOM05D004854 ORTHO05D005854 4.3e-17 91.7 61 70.5
Sc26g0002890 Simmondsia chinensis HOM05D004854 ORTHO05D005854 4.3e-17 91.7 61 70.5
A02p08620 Brassica napus HOM05D004854 ORTHO05D005854 5.7e-17 91.3 61 73.8
CsaV3_2G008580 Cucumis sativus L. HOM05D004854 ORTHO05D005854 5.7e-17 91.3 61 72.1
THA.LOC104813509 Tarenaya hassleriana HOM05D004854 ORTHO05D005854 5.7e-17 91.3 61 72.1
CiPaw.08G034100 Carya illinoinensis HOM05D004854 ORTHO05D005854 7.4e-17 90.9 61 73.8
Lsat_1_v5_gn_9_31040 Lactuca sativa HOM05D004854 ORTHO05D005854 9.7e-17 90.5 60 76.7
Sp6g19020 Schrenkiella parvula HOM05D004854 ORTHO05D005854 9.7e-17 90.5 61 72.1
AT5G57290 Arabidopsis thaliana HOM05D004854 ORTHO05D005854 1.3e-16 90.1 61 72.1
BraA02t05931Z Brassica rapa HOM05D004854 ORTHO05D005854 1.3e-16 90.1 61 72.1
MELO3C003999.2 Cucumis melo HOM05D004854 ORTHO05D005854 1.3e-16 90.1 61 70.5
Thhalv10026301m.g Eutrema salsugineum HOM05D004854 ORTHO05D005854 1.3e-16 90.1 61 72.1
Thecc.09G180300 Theobroma cacao HOM05D004854 ORTHO05D005854 1.3e-16 90.1 60 73.3
ECA247G3496 Erigeron canadensis HOM05D004854 ORTHO05D005854 1.7e-16 89.7 61 72.1
Potri.003G010200 Populus trichocarpa HOM05D004854 ORTHO05D005854 1.7e-16 89.7 62 74.2
Sabra03G0005200 Salix brachista HOM05D004854 ORTHO05D005854 1.7e-16 89.7 62 72.6
TWI38G2070 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 1.7e-16 89.7 61 70.5
A10p14720 Brassica napus HOM05D004854 ORTHO05D005854 2.2e-16 89.4 61 72.1
C09p49130 Brassica napus HOM05D004854 ORTHO05D005854 2.2e-16 89.4 61 72.1
CARHR233360 Cardamine hirsuta HOM05D004854 ORTHO05D005854 2.2e-16 89.4 61 73.8
Duzib150G0904 Durio zibethinus HOM05D004854 ORTHO05D005854 2.2e-16 89.4 61 72.1
Gohir.A05G003400 Gossypium hirsutum HOM05D004854 ORTHO05D005854 2.2e-16 89.4 61 70.5
Gohir.D05G003800 Gossypium hirsutum HOM05D004854 ORTHO05D005854 2.2e-16 89.4 61 70.5
Gorai.009G003400 Gossypium raimondii HOM05D004854 ORTHO05D005854 2.2e-16 89.4 61 70.5
THA.LOC104811780 Tarenaya hassleriana HOM05D004854 ORTHO05D005854 2.2e-16 89.4 61 70.5
BcaC03g14166 Brassica carinata HOM05D004854 ORTHO05D005854 2.8e-16 89.0 61 70.5
C02p14390 Brassica napus HOM05D004854 ORTHO05D005854 2.8e-16 89.0 61 70.5
BolC2t07563H Brassica oleracea HOM05D004854 ORTHO05D005854 2.8e-16 89.0 61 70.5
Cpa.g.sc95.32 Carica papaya HOM05D004854 ORTHO05D005854 2.8e-16 89.0 61 73.8
Manes.06G021300 Manihot esculenta HOM05D004854 ORTHO05D005854 2.8e-16 89.0 62 74.2
TWI18G0069 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 2.8e-16 89.0 61 70.5
Ah.05g168230 Amaranthus hybridus HOM05D004854 ORTHO05D005854 3.7e-16 88.6 61 72.1
AT4G25890 Arabidopsis thaliana HOM05D004854 ORTHO05D005854 3.7e-16 88.6 61 72.1
ClCG11G011930 Citrullus lanatus HOM05D004854 ORTHO05D005854 3.7e-16 88.6 61 70.5
Thhalv10015037m.g Eutrema salsugineum HOM05D004854 ORTHO05D005854 4.8e-16 88.2 61 70.5
Sabra09G0023200 Salix brachista HOM05D004854 ORTHO05D005854 4.8e-16 88.2 62 72.6
Sed0001835 Sechium edule HOM05D004854 ORTHO05D005854 4.8e-16 88.2 61 68.9
unitig_899.g15189 Utricularia gibba HOM05D004854 ORTHO05D005854 4.8e-16 88.2 60 73.3
Ah.16g108570 Amaranthus hybridus HOM05D004854 ORTHO05D005854 6.3e-16 87.8 61 72.1
FvH4_4g07630 Fragaria vesca HOM05D004854 ORTHO05D005854 8.2e-16 87.4 61 75.4
FAN07G2001 Fragaria x ananassa HOM05D004854 ORTHO05D005854 8.2e-16 87.4 61 75.4
FAN12G2445 Fragaria x ananassa HOM05D004854 ORTHO05D005854 8.2e-16 87.4 61 75.4
FAN17G2475 Fragaria x ananassa HOM05D004854 ORTHO05D005854 8.2e-16 87.4 61 75.4
MD16G1253100 Malus domestica HOM05D004854 ORTHO05D005854 1.1e-15 87.0 61 72.1
CARHR271090 Cardamine hirsuta HOM05D004854 ORTHO05D005854 1.4e-15 86.7 61 70.5
MD13G1245200 Malus domestica HOM05D004854 ORTHO05D005854 1.8e-15 86.3 61 70.5
Phvul.002G259300 Phaseolus vulgaris HOM05D004854 ORTHO05D005854 1.8e-15 86.3 61 68.9
BcaB08g36089 Brassica carinata HOM05D004854 ORTHO05D005854 2.4e-15 85.9 60 71.7
Carub.0008s1780 Capsella rubella HOM05D004854 ORTHO05D005854 2.4e-15 85.9 61 68.9
AUR62034880 Chenopodium quinoa HOM05D004854 ORTHO05D005854 2.4e-15 85.9 61 68.9
Prupe.1G079500 Prunus persica HOM05D004854 ORTHO05D005854 2.4e-15 85.9 61 70.5
Carub.0007s1506 Capsella rubella HOM05D004854 ORTHO05D005854 3.1e-15 85.5 61 70.5
AUR62026626 Chenopodium quinoa HOM05D004854 ORTHO05D005854 3.1e-15 85.5 61 68.9
FAN22G0664 Fragaria x ananassa HOM05D004854 ORTHO05D005854 3.1e-15 85.5 61 73.8
TWI38G1790 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 3.1e-15 85.5 61 67.2
Aa31LG3G13170 Aethionema arabicum HOM05D004854 ORTHO05D005854 4.1e-15 85.1 61 68.9
SHI02877 Sapria himalayana HOM05D004681 ORTHO05D005541 5.3e-15 84.7 61 67.2
DCAR_003035 Daucus carota HOM05D004854 ORTHO05D005854 6.9e-15 84.3 62 67.7
Lalb_Chr07g0185421 Lupinus albus HOM05D004854 ORTHO05D005854 6.9e-15 84.3 61 70.5
Medtr8g089790 Medicago truncatula HOM05D004854 ORTHO05D005854 6.9e-15 84.3 61 67.2
Glyma.05G174300 Glycine max HOM05D004854 ORTHO05D005854 9.1e-15 84.0 61 68.9
Glyma.08G131500 Glycine max HOM05D004854 ORTHO05D005854 9.1e-15 84.0 61 68.9
Os06g0701400 Oryza sativa ssp. japonica HOM05D004854 ORTHO05D005854 9.1e-15 84.0 61 67.2
Psat7g058720 Pisum sativum HOM05D004854 ORTHO05D005854 9.1e-15 84.0 61 68.9
arahy.Tifrunner.gnm1.ann1.9B8HPN Arachis hypogaea HOM05D004854 ORTHO05D005854 1.2e-14 83.6 61 68.9
arahy.Tifrunner.gnm1.ann1.P9UE85 Arachis hypogaea HOM05D004854 ORTHO05D005854 1.2e-14 83.6 61 68.9
Ca_17781_v3 Cicer arietinum L. HOM05D004854 ORTHO05D005854 1.2e-14 83.6 61 67.2
Ciclev10002863m.g Citrus clementina HOM05D004854 ORTHO05D005854 1.2e-14 83.6 62 66.1
VMungo0251G0447 Vigna mungo HOM05D004854 ORTHO05D005854 1.2e-14 83.6 61 67.2
Os01g0231700 Oryza sativa ssp. japonica HOM05D004854 ORTHO05D005854 1.5e-14 83.2 61 65.6
TPR.G6298 Trifolium pratense HOM05D004854 ORTHO05D005854 2.6e-14 82.4 61 67.2
Lj4g0022898 Lotus japonicus HOM05D004854 ORTHO05D005854 3.4e-14 82.0 61 67.2
SEGI_03932 Sequoiadendron giganteum HOM05D004854 ORTHO05D005854 3.4e-14 82.0 61 62.3
PGR142G3975 Punica granatum HOM05D004854 ORTHO05D005854 4.5e-14 81.6 61 62.3
RcHm_v2.0_Chr4g0400241 Rosa chinensis HOM05D004854 ORTHO05D005854 4.5e-14 81.6 61 68.9
Hund26676 Selenicereus undatus HOM05D004854 ORTHO05D005854 4.5e-14 81.6 61 63.9
arahy.Tifrunner.gnm1.ann1.AP25S4 Arachis hypogaea HOM05D004854 ORTHO05D005854 5.9e-14 81.3 61 67.2
Zm00001eb226990 Zea mays HOM05D004854 ORTHO05D005854 7.7e-14 80.9 61 63.9
arahy.Tifrunner.gnm1.ann1.XNR1AK Arachis hypogaea HOM05D004854 ORTHO05D005854 1.0e-13 80.5 61 65.6
PSO423G0276 Papaver somniferum HOM05D004854 ORTHO05D005854 1.3e-13 80.1 61 62.3
PSO596G0050 Papaver somniferum HOM05D004854 ORTHO05D005854 2.2e-13 79.3 61 62.3
Thecc.01G294400 Theobroma cacao HOM05D004854 ORTHO05D005854 2.9e-13 79.0 61 65.6
Nn2g12744 Nelumbo nucifera HOM05D004854 ORTHO05D005854 3.8e-13 78.6 46 82.6
arahy.Tifrunner.gnm1.ann1.P39ID1 Arachis hypogaea HOM05D004854 ORTHO05D005854 6.5e-13 77.8 61 63.9
arahy.Tifrunner.gnm1.ann1.90PU0B Arachis hypogaea HOM05D004854 ORTHO05D005854 8.5e-13 77.4 61 63.9
RcHm_v2.0_Chr1g0341131 Rosa chinensis HOM05D004854 ORTHO05D005854 1.1e-12 77.0 61 65.6
PSO596G0067 Papaver somniferum HOM05D004854 ORTHO05D005854 1.9e-12 76.3 61 60.7
Zm00001eb272850 Zea mays HOM05D004854 ORTHO05D005854 1.9e-12 76.3 62 61.3
PSO423G0052 Papaver somniferum HOM05D004854 ORTHO05D005854 9.4e-12 73.9 61 59.0
SGA_v2.0_scaffold46G17340 Striga asiatica HOM05D004854 ORTHO05D005854 9.4e-12 73.9 61 63.9
Lalb_Chr13g0295841 Lupinus albus HOM05D004854 ORTHO05D005854 2.7e-11 72.4 61 59.0
Lj6g0003516 Lotus japonicus HOM05D004854 ORTHO05D005854 3.6e-11 72.0 61 55.7
HPP92_026146 Vanilla planifolia HOM05D003573 ORTHO05D004204 7.9e-11 70.9 57 63.2
COL.COLO4_25466 Corchorus olitorius HOM05D004854 ORTHO05D005854 6.7e-10 67.8 42 76.2
Duzib170G0267 Durio zibethinus HOM05D004854 ORTHO05D005854 8.8e-10 67.4 42 73.8
Pp3c21_16160 Physcomitrium patens HOM05D004854 ORTHO05D005854 5.7e-09 64.7 62 58.1
Pp3c22_2920 Physcomitrium patens HOM05D004854 ORTHO05D005854 9.7e-09 63.9 62 56.5
C03p15060 Brassica napus HOM05D004854 ORTHO05D005854 2.8e-08 62.4 46 71.7
Duzib168G1583 Durio zibethinus HOM05D004854 ORTHO05D005854 8.2e-08 60.8 46 58.7
BolC3t13948H Brassica oleracea HOM05D004854 ORTHO05D005854 1.1e-07 60.5 46 69.6
SMO172G0233 Selaginella moellendorffii HOM05D004854 ORTHO05D005854 3.1e-07 58.9 61 45.9
Mapoly0006s0174 Marchantia polymorpha HOM05D004854 ORTHO05D005854 7.0e-07 57.8 63 50.8
arahy.Tifrunner.gnm1.ann1.63P7R9 Arachis hypogaea HOM05D000970 ORTHO05D000788 5.9e-06 54.7 43 65.1


User provided reference genes

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