Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L01713 Erythranthe guttata HOM05D006951 ORTHO05D008594 3.3e-71 271.6 131 100.0
MSTRG.10329 Avicennia marina HOM05D006951 ORTHO05D008594 9.5e-55 216.9 125 80.8
SalBow5G4485 Salvia bowleyana HOM05D006951 ORTHO05D008594 1.6e-54 216.1 125 80.8
Cc06_g04390 Coffea canephora HOM05D006951 ORTHO05D008594 2.1e-54 215.7 126 78.6
Hma1.2p1_0828F.1_g225170 Hydrangea macrophylla HOM05D006951 ORTHO05D008594 4.7e-54 214.5 127 78.0
SGA_v2.0_scaffold35G14116 Striga asiatica HOM05D006951 ORTHO05D008594 6.2e-54 214.2 125 79.2
SalBow5G4376 Salvia bowleyana HOM05D006951 ORTHO05D008594 1.8e-53 212.6 125 80.0
Nitab4.5_0024714g0010 Nicotiana tabacum HOM05D006951 ORTHO05D008594 3.1e-53 211.8 127 79.5
Nitab4.5_0002247g0030 Nicotiana tabacum HOM05D006951 ORTHO05D008594 6.8e-53 210.7 128 78.9
Peaxi162Scf00282g00715 Petunia axillaris HOM05D006951 ORTHO05D008594 8.9e-53 210.3 126 77.0
Solyc01g097140.4 Solanum lycopersicum HOM05D006951 ORTHO05D008594 1.5e-52 209.5 125 80.0
Sopen01g040820 Solanum pennellii HOM05D006951 ORTHO05D008594 1.5e-52 209.5 125 80.0
PGSC0003DMG400027515 Solanum tuberosum HOM05D006951 ORTHO05D008594 2.0e-52 209.1 125 80.0
Dinv37325 Davidia involucrata HOM05D006951 ORTHO05D008594 2.6e-52 208.8 125 77.6
vmacro07304 Vaccinium macrocarpon HOM05D006951 ORTHO05D008594 9.9e-52 206.8 130 74.6
DCAR_017669 Daucus carota HOM05D006951 ORTHO05D008594 2.9e-51 205.3 128 74.2
Actinidia26657 Actinidia chinensis HOM05D006951 ORTHO05D008594 1.1e-50 203.4 127 73.2
Actinidia28914 Actinidia chinensis HOM05D006951 ORTHO05D008594 1.1e-50 203.4 130 72.3
CANSAT80G0954 Cannabis sativa HOM05D006951 ORTHO05D008594 1.9e-50 202.6 128 72.7
Nitab4.5_0009274g0040 Nicotiana tabacum HOM05D006951 ORTHO05D008594 1.9e-50 202.6 123 78.9
GSVIVG01033661001 Vitis vinifera HOM05D006951 ORTHO05D008594 1.9e-50 202.6 127 72.4
AUR62042061 Chenopodium quinoa HOM05D006951 ORTHO05D008594 3.2e-50 201.8 126 71.4
AUR62026921 Chenopodium quinoa HOM05D006951 ORTHO05D008594 4.1e-50 201.4 126 71.4
EL10Ac7g16659 Beta vulgaris HOM05D006951 ORTHO05D008594 5.4e-50 201.1 126 72.2
ECA233G5925 Erigeron canadensis HOM05D006951 ORTHO05D008594 5.4e-50 201.1 125 76.0
TAR369G1149 Trochodendron aralioides HOM05D006951 ORTHO05D008594 5.4e-50 201.1 125 75.2
CAN.G134.74 Capsicum annuum HOM05D006951 ORTHO05D008594 1.2e-49 199.9 125 75.2
Ca_08913_v3 Cicer arietinum L. HOM05D006951 ORTHO05D008594 2.1e-49 199.1 128 72.7
Cfa017635 Carpinus fangiana HOM05D006951 ORTHO05D008594 4.6e-49 198.0 124 73.4
CiPaw.09G171000 Carya illinoinensis HOM05D006951 ORTHO05D008594 1.0e-48 196.8 129 69.0
Manes.16G055400 Manihot esculenta HOM05D006951 ORTHO05D008594 1.0e-48 196.8 126 70.6
Sabra06G0096900 Salix brachista HOM05D006951 ORTHO05D008594 1.0e-48 196.8 129 69.0
Atru.chr8.1776 Acer truncatum HOM05D006951 ORTHO05D008594 1.3e-48 196.4 125 73.6
MD12G1109000 Malus domestica HOM05D006951 ORTHO05D008594 2.3e-48 195.7 126 70.6
PSO339G4731 Papaver somniferum HOM05D006951 ORTHO05D008594 2.3e-48 195.7 129 69.0
TWI74G0247 Tripterygium wilfordii HOM05D006951 ORTHO05D008594 2.3e-48 195.7 126 72.2
TAR633G0596 Trochodendron aralioides HOM05D006951 ORTHO05D008594 3.0e-48 195.3 130 68.5
COL.COLO4_26935 Corchorus olitorius HOM05D006951 ORTHO05D008594 3.9e-48 194.9 128 71.1
FAN14G1959 Fragaria x ananassa HOM05D006951 ORTHO05D008594 5.1e-48 194.5 127 72.4
Thecc.05G069400 Theobroma cacao HOM05D006951 ORTHO05D008594 5.1e-48 194.5 127 70.1
CsaV3_6G040080 Cucumis sativus L. HOM05D006951 ORTHO05D008594 6.6e-48 194.1 124 72.6
Haze_20517 Corylus avellana HOM05D006951 ORTHO05D008594 8.6e-48 193.7 124 70.2
ClCG04G009460 Citrullus lanatus HOM05D006951 ORTHO05D008594 1.1e-47 193.4 124 71.8
FAN05G0469 Fragaria x ananassa HOM05D006951 ORTHO05D008594 1.1e-47 193.4 127 71.7
PSO801G0767 Papaver somniferum HOM05D006951 ORTHO05D008594 1.5e-47 193.0 129 68.2
MELO3C024481.2 Cucumis melo HOM05D006951 ORTHO05D008594 1.9e-47 192.6 124 71.0
Nn6g35256 Nelumbo nucifera HOM05D006951 ORTHO05D008594 1.9e-47 192.6 132 66.7
FAN05G0824 Fragaria x ananassa HOM05D006951 ORTHO05D008594 2.5e-47 192.2 127 70.9
Potri.006G122700 Populus trichocarpa HOM05D006951 ORTHO05D008594 2.5e-47 192.2 124 70.2
FAN02G4365 Fragaria x ananassa HOM05D006951 ORTHO05D008594 3.3e-47 191.8 127 71.7
Glyma.19G185200 Glycine max HOM05D006951 ORTHO05D008594 4.3e-47 191.4 129 69.0
THA.LOC104816356 Tarenaya hassleriana HOM05D006951 ORTHO05D008594 4.3e-47 191.4 126 69.8
FvH4_6g16580 Fragaria vesca HOM05D006951 ORTHO05D008594 5.6e-47 191.0 127 71.7
Aqoxy2G01713 Aquilegia oxysepala HOM05D006951 ORTHO05D008594 7.3e-47 190.7 124 71.0
Cpa.g.sc456.2 Carica papaya HOM05D006951 ORTHO05D008594 7.3e-47 190.7 131 69.5
Prupe.7G127500 Prunus persica HOM05D006951 ORTHO05D008594 7.3e-47 190.7 127 69.3
RcHm_v2.0_Chr3g0470511 Rosa chinensis HOM05D006951 ORTHO05D008594 9.6e-47 190.3 128 71.1
Eucgr.A01658 Eucalyptus grandis HOM05D006951 ORTHO05D008594 2.8e-46 188.7 124 70.2
arahy.Tifrunner.gnm1.ann1.GEWQ29 Arachis hypogaea HOM05D006951 ORTHO05D008594 4.7e-46 188.0 124 70.2
arahy.Tifrunner.gnm1.ann1.U3DP0D Arachis hypogaea HOM05D006951 ORTHO05D008594 4.7e-46 188.0 124 70.2
PGR004G1868 Punica granatum HOM05D006951 ORTHO05D008594 4.7e-46 188.0 129 65.9
Sed0009232 Sechium edule HOM05D006951 ORTHO05D008594 4.7e-46 188.0 126 69.0
HanXRQChr02g0051701 Helianthus annuus HOM05D006951 ORTHO05D008594 6.2e-46 187.6 126 70.6
Medtr7g102310 Medicago truncatula HOM05D006951 ORTHO05D008594 8.1e-46 187.2 124 70.2
VMungo1383G2370 Vigna mungo HOM05D006951 ORTHO05D008594 8.1e-46 187.2 127 67.7
Phvul.001G180100 Phaseolus vulgaris HOM05D006951 ORTHO05D008594 1.1e-45 186.8 126 67.5
Gohir.A09G145200 Gossypium hirsutum HOM05D006951 ORTHO05D008594 1.8e-45 186.0 130 66.9
Duzib106G1710 Durio zibethinus HOM05D006951 ORTHO05D008594 2.4e-45 185.7 124 67.7
Gohir.D09G141300 Gossypium hirsutum HOM05D006951 ORTHO05D008594 2.4e-45 185.7 130 66.9
Gorai.006G162200 Gossypium raimondii HOM05D006951 ORTHO05D008594 2.4e-45 185.7 130 66.9
Psat3g041600 Pisum sativum HOM05D006951 ORTHO05D008594 1.2e-44 183.3 125 68.8
QL07p042869 Quercus lobata HOM05D006951 ORTHO05D008594 2.0e-44 182.6 163 57.7
HanXRQChr13g0400861 Helianthus annuus HOM05D006951 ORTHO05D008594 2.6e-44 182.2 126 66.7
BcaB01g05820 Brassica carinata HOM05D006951 ORTHO05D008594 3.4e-44 181.8 129 65.1
Lj1g0019165 Lotus japonicus HOM05D006951 ORTHO05D008594 3.4e-44 181.8 129 65.9
Lalb_Chr25g0288931 Lupinus albus HOM05D006951 ORTHO05D008594 3.4e-44 181.8 124 66.9
AL6G12830 Arabidopsis lyrata HOM05D006951 ORTHO05D008594 5.8e-44 181.0 127 66.9
BcaB01g05838 Brassica carinata HOM05D006951 ORTHO05D008594 5.8e-44 181.0 129 64.3
A03p01180 Brassica napus HOM05D006951 ORTHO05D008594 5.8e-44 181.0 129 64.3
C03p01520 Brassica napus HOM05D006951 ORTHO05D008594 5.8e-44 181.0 129 64.3
BolC3t12706H Brassica oleracea HOM05D006951 ORTHO05D008594 5.8e-44 181.0 129 64.3
BraA03t09500Z Brassica rapa HOM05D006951 ORTHO05D008594 5.8e-44 181.0 129 64.3
Carub.0006s0227 Capsella rubella HOM05D006951 ORTHO05D008594 5.8e-44 181.0 127 66.9
Sc20g0005620 Simmondsia chinensis HOM05D006951 ORTHO05D008594 9.9e-44 180.3 120 71.7
ATR0723G063 Amborella trichopoda HOM05D006951 ORTHO05D008594 2.2e-43 179.1 127 63.0
Thhalv10014956m.g Eutrema salsugineum HOM05D006951 ORTHO05D008594 2.9e-43 178.7 127 65.4
Lsat_1_v5_gn_6_24461 Lactuca sativa HOM05D006951 ORTHO05D008594 3.8e-43 178.3 111 73.9
MBI07_g19430_MAGBIO Magnolia biondii HOM05D006951 ORTHO05D008594 3.8e-43 178.3 126 61.9
unitig_8.g4717 Utricularia gibba HOM05D006951 ORTHO05D008594 3.8e-43 178.3 113 72.6
CARHR209870 Cardamine hirsuta HOM05D006951 ORTHO05D008594 4.9e-43 177.9 127 65.4
Ciclev10013072m.g Citrus clementina HOM05D006951 ORTHO05D008594 4.9e-43 177.9 123 66.7
Sp6g39280 Schrenkiella parvula HOM05D006951 ORTHO05D008594 4.9e-43 177.9 127 64.6
Aa31LG1G21700 Aethionema arabicum HOM05D006951 ORTHO05D008594 8.4e-43 177.2 126 64.3
Os03g0108000 Oryza sativa ssp. japonica HOM05D006951 ORTHO05D008594 1.1e-42 176.8 124 63.7
CDE08G0062 Ceratophyllum demersum HOM05D006951 ORTHO05D008594 3.0e-40 168.7 125 60.0
HPP92_025583 Vanilla planifolia HOM05D006951 ORTHO05D008594 6.2e-38 161.0 124 58.1
Zm00001eb394010 Zea mays HOM05D006951 ORTHO05D008594 1.4e-37 159.8 130 56.9
CDE02G4226 Ceratophyllum demersum HOM05D006951 ORTHO05D008594 6.9e-37 157.5 124 58.1
SEGI_23238 Sequoiadendron giganteum HOM05D006951 ORTHO05D008594 6.9e-37 157.5 124 53.2
Pp3c1_27510 Physcomitrium patens HOM05D006951 ORTHO05D008594 1.1e-34 150.2 131 53.4
Dinv35800 Davidia involucrata HOM05D006951 ORTHO05D008594 2.4e-34 149.1 87 79.3
AagrBONN_evm.TU.Sc2ySwM_368.1351 Anthoceros agrestis HOM05D006951 ORTHO05D008594 2.5e-31 139.0 125 52.0
Mapoly0029s0104 Marchantia polymorpha HOM05D006951 ORTHO05D008594 9.6e-31 137.1 125 53.6
AagrBONN_evm.TU.Sc2ySwM_340.899 Anthoceros agrestis HOM05D006951 ORTHO05D008594 1.3e-30 136.7 125 52.0
SMO118G0389 Selaginella moellendorffii HOM05D006951 ORTHO05D008594 1.2e-28 130.2 123 49.6
CSS0013835 Camellia sinensis var. sinensis HOM05D006951 ORTHO05D008594 2.4e-26 122.5 78 73.1
HPP92_025582 Vanilla planifolia HOM05D006951 ORTHO05D008594 2.7e-25 119.0 150 44.0
TPR.G32820 Trifolium pratense HOM05D006951 ORTHO05D008594 1.1e-23 113.6 81 67.9
AT5G03455 Arabidopsis thaliana HOM05D006951 ORTHO05D008594 6.9e-21 104.4 73 69.9
CSS0008283 Camellia sinensis var. sinensis HOM05D006951 ORTHO05D008594 6.0e-17 91.3 58 69.0
PGR004G2181 Punica granatum HOM05D006951 ORTHO05D008594 5.1e-16 88.2 68 58.8
TPR.G15158 Trifolium pratense HOM05D006951 ORTHO05D008594 8.7e-16 87.4 53 71.7
Os10g0545700 Oryza sativa ssp. japonica HOM05D006951 ORTHO05D008594 2.1e-14 82.8 53 64.2
Atru.chr8.1773 Acer truncatum HOM05D006951 ORTHO05D008594 6.9e-13 77.8 54 66.7
BcaC06g32064 Brassica carinata HOM05D006951 ORTHO05D008594 2.0e-12 76.3 54 57.4
Hund14405 Selenicereus undatus HOM05D004066 ORTHO05D004434 3.7e-06 55.5 45 51.1
Cre07.g352550 Chlamydomonas reinhardtii HOM05D027504 ORTHO05D028778 6.3e-06 54.7 94 34.0


User provided reference genes

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