Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L01497 Erythranthe guttata HOM05D005251 ORTHO05D006680 0.0e+00 1168.7 605 100.0
MSTRG.10560 Avicennia marina HOM05D005251 ORTHO05D006680 7.3e-275 950.3 607 80.2
Dinv36771 Davidia involucrata HOM05D005251 ORTHO05D006680 3.8e-247 858.2 606 71.8
CSS0048193 Camellia sinensis var. sinensis HOM05D005251 ORTHO05D006680 1.3e-244 849.7 606 71.9
CSS0047543 Camellia sinensis var. sinensis HOM05D005251 ORTHO05D006680 4.8e-242 841.3 606 71.3
Cc06_g11450 Coffea canephora HOM05D005251 ORTHO05D006680 5.3e-241 837.8 603 71.3
Thecc.09G088600 Theobroma cacao HOM05D005251 ORTHO05D006680 6.0e-237 824.3 606 69.1
Eucgr.C00887 Eucalyptus grandis HOM05D005251 ORTHO05D006680 7.9e-237 823.9 609 70.3
Gorai.010G083200 Gossypium raimondii HOM05D005251 ORTHO05D006680 3.9e-236 821.6 606 68.8
Gohir.A06G072900 Gossypium hirsutum HOM05D005251 ORTHO05D006680 4.3e-235 818.1 606 68.5
CiPaw.03G215300 Carya illinoinensis HOM05D005251 ORTHO05D006680 1.3e-234 816.6 605 69.4
TWI34G0442 Tripterygium wilfordii HOM05D005251 ORTHO05D006680 2.8e-234 815.5 605 69.6
TAR624G0724 Trochodendron aralioides HOM05D005251 ORTHO05D006680 3.7e-234 815.1 605 70.7
Prupe.7G209200 Prunus persica HOM05D005251 ORTHO05D006680 5.3e-233 811.2 606 68.6
PGSC0003DMG400000278 Solanum tuberosum HOM05D005251 ORTHO05D006680 7.6e-232 807.4 605 69.4
Actinidia39715 Actinidia chinensis HOM05D005251 ORTHO05D006680 1.0e-231 807.0 608 69.1
Ciclev10010506m.g Citrus clementina HOM05D005251 ORTHO05D006680 1.0e-231 807.0 605 69.4
Oeu018416.2 Olea europaea HOM05D005251 ORTHO05D006680 4.9e-231 804.7 624 69.7
Gohir.D06G071400 Gossypium hirsutum HOM05D005251 ORTHO05D006680 1.1e-230 803.5 644 64.8
PGR142G3350 Punica granatum HOM05D005251 ORTHO05D006680 6.0e-229 797.7 605 68.9
FvH4_1g07540 Fragaria vesca HOM05D005251 ORTHO05D006680 1.3e-228 796.6 607 68.4
Potri.006G152100 Populus trichocarpa HOM05D005251 ORTHO05D006680 6.7e-228 794.3 609 68.1
Glyma.13G104400 Glycine max HOM05D005251 ORTHO05D006680 8.7e-228 793.9 609 69.5
Rhsim05G0020500 Rhododendron simsii HOM05D005251 ORTHO05D006680 8.7e-228 793.9 610 67.5
Manes.03G034200 Manihot esculenta HOM05D005251 ORTHO05D006680 1.5e-227 793.1 604 67.7
Nn8g38856 Nelumbo nucifera HOM05D005251 ORTHO05D006680 5.7e-227 791.2 604 68.4
HanXRQChr06g0178551 Helianthus annuus HOM05D005251 ORTHO05D006680 6.3e-226 787.7 609 68.1
GSVIVG01015197001 Vitis vinifera HOM05D005251 ORTHO05D006680 3.1e-225 785.4 605 68.1
CAN.G1241.24 Capsicum annuum HOM05D005251 ORTHO05D006680 1.2e-224 783.5 627 66.7
CsaV3_1G040480 Cucumis sativus L. HOM05D005251 ORTHO05D006680 1.2e-224 783.5 606 67.8
MELO3C015476.2 Cucumis melo HOM05D005251 ORTHO05D006680 2.6e-224 782.3 606 67.5
Phvul.003G136700 Phaseolus vulgaris HOM05D005251 ORTHO05D006680 1.9e-222 776.2 606 68.0
FAN19G0073 Fragaria x ananassa HOM05D005251 ORTHO05D006680 5.5e-222 774.6 607 67.2
MD02G1080200 Malus domestica HOM05D005251 ORTHO05D006680 9.3e-222 773.9 611 66.8
Lj4g0006207 Lotus japonicus HOM05D005251 ORTHO05D006680 4.6e-221 771.5 605 68.4
Duzib150G0576 Durio zibethinus HOM05D005251 ORTHO05D006680 1.8e-220 769.6 606 65.5
FAN23G1060 Fragaria x ananassa HOM05D005251 ORTHO05D006680 1.3e-218 763.5 607 66.2
ECA232G2798 Erigeron canadensis HOM05D005251 ORTHO05D006680 4.8e-218 761.5 579 67.2
Haze_25916 Corylus avellana HOM05D005251 ORTHO05D006680 1.1e-217 760.4 605 67.4
FAN28G0072 Fragaria x ananassa HOM05D005251 ORTHO05D006680 1.1e-217 760.4 613 66.1
Medtr4g126260 Medicago truncatula HOM05D005251 ORTHO05D006680 1.1e-217 760.4 603 67.0
RcHm_v2.0_Chr2g0093421 Rosa chinensis HOM05D005251 ORTHO05D006680 2.4e-217 759.2 609 65.7
Lj4A303G24 Lonicera japonica HOM05D005251 ORTHO05D006680 9.0e-217 757.3 600 66.5
Atru.BG.14.p Acer truncatum HOM05D005251 ORTHO05D006680 1.0e-215 753.8 603 65.7
Cfa003082 Carpinus fangiana HOM05D005251 ORTHO05D006680 2.2e-215 752.7 606 66.5
TPR.G9472 Trifolium pratense HOM05D005251 ORTHO05D006680 2.9e-215 752.3 617 65.2
Cpa.g.sc61.41 Carica papaya HOM05D005251 ORTHO05D006680 1.1e-214 750.4 605 61.8
THA.LOC104817759 Tarenaya hassleriana HOM05D005251 ORTHO05D006680 2.5e-214 749.2 601 65.1
FAN26G3339 Fragaria x ananassa HOM05D005251 ORTHO05D006680 3.2e-214 748.8 627 64.4
FAN26G1479 Fragaria x ananassa HOM05D005251 ORTHO05D006680 1.6e-213 746.5 627 64.3
QL02p062545 Quercus lobata HOM05D005251 ORTHO05D006680 1.6e-213 746.5 578 67.8
AL8G32750 Arabidopsis lyrata HOM05D005251 ORTHO05D006680 2.3e-212 742.7 600 65.7
PSO210G1153 Papaver somniferum HOM05D005251 ORTHO05D006680 3.9e-212 741.9 602 64.1
AT5G56900 Arabidopsis thaliana HOM05D005251 ORTHO05D006680 8.8e-212 740.7 600 65.5
Sabra06G0120400 Salix brachista HOM05D005251 ORTHO05D006680 1.5e-211 740.0 609 65.7
BcaB08g36046 Brassica carinata HOM05D005251 ORTHO05D006680 2.0e-211 739.6 601 64.7
BcaC04g20043 Brassica carinata HOM05D005251 ORTHO05D006680 3.3e-211 738.8 600 64.8
C09p48540 Brassica napus HOM05D005251 ORTHO05D006680 3.3e-211 738.8 600 64.8
BolC9t57695H Brassica oleracea HOM05D005251 ORTHO05D006680 3.3e-211 738.8 600 64.8
PSO210G7113 Papaver somniferum HOM05D005251 ORTHO05D006680 5.7e-211 738.0 602 64.0
Sp6g18620 Schrenkiella parvula HOM05D005251 ORTHO05D006680 5.7e-211 738.0 600 64.7
EL10Ac8g19209 Beta vulgaris HOM05D005251 ORTHO05D006680 1.1e-209 733.8 601 64.7
arahy.Tifrunner.gnm1.ann1.Y01GTZ Arachis hypogaea HOM05D005251 ORTHO05D006680 2.4e-209 732.6 608 66.3
Thhalv10013022m.g Eutrema salsugineum HOM05D005251 ORTHO05D006680 5.3e-209 731.5 606 64.0
AUR62029068 Chenopodium quinoa HOM05D005251 ORTHO05D006680 1.2e-208 730.3 601 64.2
Ah.09g228240 Amaranthus hybridus HOM05D005251 ORTHO05D006680 2.0e-208 729.6 601 63.9
Aqoxy7G04044 Aquilegia oxysepala HOM05D005251 ORTHO05D006680 2.9e-207 725.7 605 64.0
AUR62033961 Chenopodium quinoa HOM05D005251 ORTHO05D006680 6.5e-207 724.5 601 63.7
ClCG03G015560 Citrullus lanatus HOM05D005251 ORTHO05D006680 1.9e-206 723.0 585 65.8
Aa31LG3G12780 Aethionema arabicum HOM05D005251 ORTHO05D006680 2.1e-205 719.5 613 63.6
A10p14170 Brassica napus HOM05D005251 ORTHO05D006680 3.0e-204 715.7 630 61.1
CANSAT56G1459 Cannabis sativa HOM05D005251 ORTHO05D006680 6.3e-202 708.0 550 66.4
Carub.0008s1736 Capsella rubella HOM05D005251 ORTHO05D006680 6.3e-202 708.0 600 63.2
VMungo1215G2738 Vigna mungo HOM05D005251 ORTHO05D006680 5.3e-201 704.9 612 64.4
Sc18g0002110 Simmondsia chinensis HOM05D005251 ORTHO05D006680 3.3e-195 685.6 532 67.1
Glyma.17G054700 Glycine max HOM05D005251 ORTHO05D006680 1.3e-194 683.7 516 71.1
BraA10t43510Z Brassica rapa HOM05D005251 ORTHO05D006680 4.8e-194 681.8 610 60.8
Lsat_1_v5_gn_8_87701 Lactuca sativa HOM05D005251 ORTHO05D006680 1.4e-193 680.2 607 59.5
MBI04_g31157_MAGBIO Magnolia biondii HOM05D005251 ORTHO05D006680 4.1e-193 678.7 586 61.9
Ca_21279_v3 Cicer arietinum L. HOM05D005251 ORTHO05D006680 1.6e-192 676.8 562 65.3
Sed0019984 Sechium edule HOM05D005251 ORTHO05D006680 6.8e-188 661.4 484 71.5
Psat4g015200 Pisum sativum HOM05D005251 ORTHO05D006680 3.7e-186 655.6 512 68.8
Os09g0364000 Oryza sativa ssp. japonica HOM05D005251 ORTHO05D006680 4.8e-186 655.2 607 59.5
COL.COLO4_18196 Corchorus olitorius HOM05D005251 ORTHO05D006680 9.5e-182 641.0 605 56.9
unitig_8.g4690 Utricularia gibba HOM05D005251 ORTHO05D006680 1.6e-181 640.2 546 64.7
SGA_v2.0_scaffold21G09390 Striga asiatica HOM05D005251 ORTHO05D006680 9.5e-174 614.4 423 77.5
vmacro17241 Vaccinium macrocarpon HOM05D005251 ORTHO05D006680 3.3e-150 536.2 448 64.3
Lalb_Chr12g0199791 Lupinus albus HOM05D005251 ORTHO05D006680 4.7e-149 532.3 441 66.2
Pp3c16_14300 Physcomitrium patens HOM05D005251 ORTHO05D006680 2.8e-141 506.5 643 46.0
SMO273G0018 Selaginella moellendorffii HOM05D005251 ORTHO05D006680 9.9e-139 498.0 638 45.1
Mapoly0009s0116 Marchantia polymorpha HOM05D005251 ORTHO05D006680 3.2e-137 493.0 647 44.4
MD15G1207600 Malus domestica HOM05D005251 ORTHO05D006680 2.1e-136 490.3 438 57.3
Peaxi162Scf00498g00321 Petunia axillaris HOM05D005251 ORTHO05D006680 5.6e-134 482.3 400 63.2
CARHR270650 Cardamine hirsuta HOM05D005251 ORTHO05D006680 5.4e-129 465.7 416 60.6
Atru.chr7.1595 Acer truncatum HOM05D005251 ORTHO05D006680 2.2e-122 443.7 359 66.9
Nitab4.5_0000540g0310 Nicotiana tabacum HOM05D005251 ORTHO05D006680 7.9e-120 435.3 353 63.2
Sopen12g003800 Solanum pennellii HOM05D005251 ORTHO05D006680 7.9e-120 435.3 353 68.3
Solyc12g008870.1 Solanum lycopersicum HOM05D005251 ORTHO05D006680 1.0e-119 434.9 353 68.6
SMO147G0126 Selaginella moellendorffii HOM05D005251 ORTHO05D006680 2.3e-119 433.7 631 42.9
AagrBONN_evm.TU.Sc2ySwM_228.1764 Anthoceros agrestis HOM05D005251 ORTHO05D006680 5.3e-116 422.5 595 40.0
Zm00001eb311020 Zea mays HOM05D005251 ORTHO05D006680 1.1e-89 335.1 352 55.7
Nitab4.5_0008523g0050 Nicotiana tabacum HOM05D005251 ORTHO05D006680 2.6e-86 323.9 399 45.9
ATR0789G159 Amborella trichopoda HOM05D005251 ORTHO05D006680 1.3e-74 285.0 364 48.6
PRCOL_00000275 Prasinoderma coloniale HOM05D005251 ORTHO05D006680 6.3e-69 266.2 692 30.3
CBR_g54012 Chara braunii HOM05D005251 ORTHO05D006680 8.3e-69 265.8 754 29.4
arahy.Tifrunner.gnm1.ann1.V18GKH Arachis hypogaea HOM05D005251 ORTHO05D006680 8.6e-66 255.8 157 78.3
Sopen12g003810 Solanum pennellii HOM05D005251 ORTHO05D006680 6.8e-63 246.1 160 73.1
Lalb_Chr12g0199801 Lupinus albus HOM05D005251 ORTHO05D006680 7.5e-62 242.7 160 72.5
Cre07.g338900 Chlamydomonas reinhardtii HOM05D005251 ORTHO05D006680 1.8e-60 238.0 687 29.0
C09p50860 Brassica napus HOM05D005251 ORTHO05D006680 1.7e-58 231.5 172 65.1
MD15G1207700 Malus domestica HOM05D005251 ORTHO05D006680 2.2e-53 214.5 136 75.0
SGA_v2.0_scaffold21G09392 Striga asiatica HOM05D005251 ORTHO05D006680 2.2e-53 214.5 117 87.2
arahy.Tifrunner.gnm1.ann1.BFBS1X Arachis hypogaea HOM05D005251 ORTHO05D006680 3.5e-51 207.2 176 59.1
HPP92_009143 Vanilla planifolia HOM05D005251 ORTHO05D006680 4.6e-51 206.8 204 52.9
SEGI_26696 Sequoiadendron giganteum HOM05D005251 ORTHO05D006680 1.1e-49 202.2 293 44.0
HPP92_009144 Vanilla planifolia HOM05D005251 ORTHO05D006680 4.7e-48 196.8 215 47.9
Solyc12g008890.3 Solanum lycopersicum HOM05D005251 ORTHO05D006680 1.9e-44 184.9 117 73.5
BcaNung02827 Brassica carinata HOM05D005251 ORTHO05D006680 1.6e-43 181.8 184 53.3
BcaNung03955 Brassica carinata HOM05D005251 ORTHO05D006680 1.6e-43 181.8 184 53.3
VMungo1383G3543 Vigna mungo HOM05D005251 ORTHO05D006680 1.0e-42 179.1 235 46.4
Duzib168G1322 Durio zibethinus HOM05D005251 ORTHO05D006680 5.0e-42 176.8 267 39.3
vmacro17242 Vaccinium macrocarpon HOM05D005251 ORTHO05D006680 4.9e-37 160.2 96 79.2
ATR0789G123 Amborella trichopoda HOM05D005251 ORTHO05D006680 8.3e-37 159.5 117 62.4
C07p41650 Brassica napus HOM05D005251 ORTHO05D019858 1.1e-36 159.1 161 53.4
MCO07G467 Micromonas commoda HOM05D005251 ORTHO05D006680 3.2e-36 157.5 409 28.6
BcaNung02829 Brassica carinata HOM05D005251 ORTHO05D019858 2.1e-35 154.8 184 47.3
vmacro17238 Vaccinium macrocarpon HOM05D005251 ORTHO05D006680 1.9e-33 148.3 284 34.5
C06p07120 Brassica napus HOM05D005251 ORTHO05D006680 2.8e-32 144.4 114 61.4
Sopen05g023240 Solanum pennellii HOM05D005251 ORTHO05D006680 8.1e-32 142.9 92 70.7
BolC7t44699H Brassica oleracea HOM05D005251 ORTHO05D019858 2.4e-31 141.4 145 53.1
Solyc05g032650.3 Solanum lycopersicum HOM05D005251 ORTHO05D006680 3.8e-29 134.0 138 51.4
MCO16G282 Micromonas commoda HOM05D005251 ORTHO05D006680 1.9e-25 121.7 278 33.8
Nitab4.5_0000540g0330 Nicotiana tabacum HOM05D005251 ORTHO05D006680 2.0e-22 111.7 87 62.1
Os03g0740700 Oryza sativa ssp. japonica HOM05D003636 ORTHO05D005160 2.3e-18 98.2 220 25.5
HPP92_018388 Vanilla planifolia HOM05D003636 ORTHO05D005160 1.5e-17 95.5 222 26.1
CANSAT11G0466 Cannabis sativa HOM05D003636 ORTHO05D005160 3.3e-17 94.4 225 26.7
Zm00001eb056720 Zea mays HOM05D003636 ORTHO05D005160 7.3e-17 93.2 224 25.0
Medtr1g107575 Medicago truncatula HOM05D003636 ORTHO05D005160 1.8e-15 88.6 223 25.1
Lalb_Chr21g0308481 Lupinus albus HOM05D003636 ORTHO05D005160 2.4e-15 88.2 223 25.1
CARHR289840 Cardamine hirsuta HOM05D003636 ORTHO05D005160 3.1e-15 87.8 224 25.4
Mapoly0080s0020 Marchantia polymorpha HOM05D003636 ORTHO05D005160 4.0e-15 87.4 221 24.0
Lj2g0003499 Lotus japonicus HOM05D003636 ORTHO05D005160 9.0e-15 86.3 223 25.6
Pp3c6_28790 Physcomitrium patens HOM05D003636 ORTHO05D005160 1.2e-14 85.9 206 27.2
vmacro22302 Vaccinium macrocarpon HOM05D005251 ORTHO05D006680 1.5e-14 85.5 83 49.4
CBR_g41119 Chara braunii HOM05D003636 ORTHO05D005160 2.6e-14 84.7 192 27.6
ClCG09G021970 Citrullus lanatus HOM05D003636 ORTHO05D005160 2.6e-14 84.7 221 25.3
Lj5g0001808 Lotus japonicus HOM05D003636 ORTHO05D005160 3.4e-14 84.3 223 25.1
EL10Ac2g04633 Beta vulgaris HOM05D003636 ORTHO05D005160 4.5e-14 84.0 227 22.5
COL.COLO4_18153 Corchorus olitorius HOM05D005251 ORTHO05D006680 2.2e-13 81.6 53 77.4
TPR.G3263 Trifolium pratense HOM05D003636 ORTHO05D005160 2.2e-13 81.6 223 24.2
Cre17.g741550 Chlamydomonas reinhardtii HOM05D003636 ORTHO05D005160 3.8e-13 80.9 186 28.0
Dinv44639 Davidia involucrata HOM05D003636 ORTHO05D005160 6.4e-13 80.1 223 22.4
CSS0023771 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 3.2e-12 77.8 223 22.0
EL10Ac2g03737 Beta vulgaris HOM05D003636 ORTHO05D005160 7.1e-12 76.6 238 23.1
CSS0034908 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 7.1e-12 76.6 221 21.7
MCO13G162 Micromonas commoda HOM05D003636 ORTHO05D005160 7.1e-12 76.6 202 26.7
Sed0019602 Sechium edule HOM05D003636 ORTHO05D005160 7.1e-12 76.6 221 24.4
AUR62014577 Chenopodium quinoa HOM05D003636 ORTHO05D005160 9.3e-12 76.3 201 21.9
AUR62039385 Chenopodium quinoa HOM05D003636 ORTHO05D005160 9.3e-12 76.3 223 22.0
Haze_21469 Corylus avellana HOM05D003636 ORTHO05D005160 9.3e-12 76.3 254 23.2
SMO356G0642 Selaginella moellendorffii HOM05D003636 ORTHO05D005160 1.2e-11 75.9 249 22.9
THA.LOC104801942 Tarenaya hassleriana HOM05D003636 ORTHO05D005160 2.1e-11 75.1 224 23.2
BolC9t57946H Brassica oleracea HOM05D005251 ORTHO05D006680 2.3e-10 71.6 51 62.7
Actinidia25250 Actinidia chinensis HOM05D005251 ORTHO05D006680 1.5e-09 68.9 42 73.8
C06p07130 Brassica napus HOM05D005251 ORTHO05D006680 5.6e-09 67.0 41 68.3
SalBow5G3528 Salvia bowleyana HOM05D000147 ORTHO05D005311 9.6e-09 66.2 36 77.8
vmacro15411 Vaccinium macrocarpon HOM05D003636 ORTHO05D005160 9.6e-09 66.2 248 20.6
PRCOL_00006475 Prasinoderma coloniale HOM05D003636 ORTHO05D005160 5.3e-07 60.5 207 22.7
Cre07.g338700 Chlamydomonas reinhardtii HOM05D005251 ORTHO05D006680 9.9e-06 56.2 157 24.8
Cre07.g338800 Chlamydomonas reinhardtii HOM05D005251 ORTHO05D006680 9.9e-06 56.2 161 24.8


User provided reference genes

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