Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 4.1e-234 814.3 397 100.0
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 1.5e-228 795.8 397 98.0
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 9.9e-180 633.6 399 78.4
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 1.7e-179 632.9 402 78.6
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 1.4e-178 629.8 406 77.8
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 6.9e-173 610.9 445 70.3
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 2.2e-171 605.9 397 73.0
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 1.3e-163 580.1 404 69.3
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 1.9e-162 576.2 404 68.8
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 1.8e-160 569.7 406 70.7
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 1.5e-159 566.6 397 70.5
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 1.6e-158 563.1 410 68.5
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 5.3e-157 558.1 434 64.5
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 6.9e-157 557.8 433 65.1
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 9.0e-157 557.4 434 64.5
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 9.0e-157 557.4 434 64.5
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.2e-156 557.0 414 67.1
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.2e-156 557.0 414 67.1
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 4.5e-156 555.1 402 68.4
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 2.5e-154 549.3 408 66.7
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 2.7e-153 545.8 411 66.4
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 1.3e-152 543.5 410 66.3
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 1.5e-151 540.0 401 67.6
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 2.5e-151 539.3 399 66.2
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 4.3e-151 538.5 397 66.8
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 1.3e-150 537.0 524 55.0
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 1.3e-150 537.0 413 64.9
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 1.6e-150 536.6 410 65.6
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 2.2e-150 536.2 411 65.9
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 3.7e-150 535.4 395 66.3
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 1.1e-149 533.9 396 66.7
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 1.8e-149 533.1 399 64.4
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 3.1e-149 532.3 396 65.9
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 4.1e-149 531.9 404 65.3
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 9.0e-149 530.8 404 65.8
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 1.2e-148 530.4 403 66.0
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 2.0e-148 529.6 395 66.1
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 1.0e-147 527.3 397 68.0
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 2.2e-147 526.2 402 65.7
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 3.8e-147 525.4 391 66.0
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 8.5e-147 524.2 410 64.1
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 1.1e-146 523.9 396 65.2
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 1.4e-146 523.5 408 63.5
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 1.9e-146 523.1 395 65.3
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 7.2e-146 521.2 396 64.6
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 9.4e-146 520.8 395 65.1
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 1.2e-145 520.4 407 63.6
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 2.1e-145 519.6 408 62.7
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 3.6e-145 518.8 408 62.5
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 3.6e-145 518.8 402 65.9
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 7.9e-145 517.7 406 63.5
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 1.0e-144 517.3 406 63.5
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 1.0e-144 517.3 405 64.0
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 1.4e-144 516.9 394 64.7
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 1.4e-144 516.9 408 63.0
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 1.8e-144 516.5 409 63.3
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 1.8e-144 516.5 406 63.5
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 1.8e-144 516.5 406 63.1
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 3.0e-144 515.8 394 64.5
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 3.0e-144 515.8 408 63.5
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 5.1e-144 515.0 394 65.5
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 1.1e-143 513.8 411 63.0
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 1.1e-143 513.8 479 57.0
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 1.1e-143 513.8 406 63.1
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 2.5e-143 512.7 397 65.5
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 3.3e-143 512.3 408 63.0
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 3.3e-143 512.3 397 63.7
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 4.3e-143 511.9 395 62.8
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 4.3e-143 511.9 395 62.8
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 5.7e-143 511.5 405 62.5
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 9.7e-143 510.8 417 61.9
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 1.7e-142 510.0 407 61.9
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 2.8e-142 509.2 409 62.3
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 2.8e-142 509.2 406 61.8
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 4.8e-142 508.4 397 63.0
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 1.8e-141 506.5 408 63.0
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 3.1e-141 505.8 407 61.7
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 4.1e-141 505.4 396 62.4
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 1.5e-140 503.4 421 60.3
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 4.5e-140 501.9 405 62.5
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 7.7e-140 501.1 414 61.8
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 2.5e-138 496.1 393 61.8
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 5.5e-138 495.0 401 62.1
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 1.2e-137 493.8 347 69.5
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 1.4e-136 490.3 433 58.0
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 8.8e-136 487.6 393 61.8
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 2.6e-135 486.1 407 61.9
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 4.4e-135 485.3 417 61.4
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 7.4e-135 484.6 404 61.4
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 9.7e-135 484.2 389 59.9
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 9.7e-135 484.2 406 60.8
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 2.2e-134 483.0 411 61.1
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 3.7e-134 482.3 389 59.6
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 3.7e-134 482.3 393 60.8
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 8.2e-134 481.1 394 59.6
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.1e-133 480.7 409 60.4
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 1.8e-133 479.9 391 60.1
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 9.1e-133 477.6 394 59.6
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 1.5e-132 476.9 375 61.1
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 3.5e-132 475.7 411 60.1
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 3.5e-132 475.7 393 60.1
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 4.5e-132 475.3 394 59.4
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 5.9e-132 474.9 411 60.1
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 2.2e-131 473.0 394 59.4
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 2.9e-131 472.6 397 61.0
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 2.9e-131 472.6 389 58.1
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 3.8e-131 472.2 481 53.6
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 5.0e-131 471.9 389 59.4
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 8.5e-131 471.1 389 58.1
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 8.5e-131 471.1 318 73.0
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 1.9e-130 469.9 389 58.1
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 3.2e-130 469.2 389 58.1
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 9.4e-130 467.6 389 58.4
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 9.4e-130 467.6 400 57.8
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 9.4e-130 467.6 400 57.8
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 1.2e-129 467.2 371 60.9
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 2.1e-129 466.5 391 60.4
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 3.6e-129 465.7 389 57.3
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 1.4e-128 463.8 389 57.3
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 3.9e-128 462.2 390 57.7
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 1.5e-127 460.3 390 58.7
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 2.0e-127 459.9 389 56.8
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 2.6e-127 459.5 393 56.7
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 7.4e-127 458.0 394 56.6
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 7.4e-127 458.0 394 56.6
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 7.4e-127 458.0 394 56.6
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 1.7e-126 456.8 395 56.7
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 6.3e-126 454.9 383 56.9
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 8.2e-126 454.5 370 60.8
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 1.4e-125 453.8 410 57.3
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 4.1e-125 452.2 395 56.5
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 5.3e-125 451.8 395 56.5
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 7.0e-125 451.4 389 55.8
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 1.6e-124 450.3 394 56.9
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 2.2e-123 446.4 392 55.9
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 2.2e-123 446.4 415 55.2
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 1.9e-122 443.4 636 41.5
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 7.2e-122 441.4 400 56.2
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 5.2e-120 435.3 393 57.3
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 2.7e-116 422.9 383 52.5
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 1.9e-114 416.8 397 52.6
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 2.6e-111 406.4 281 69.4
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 7.5e-111 404.8 293 66.2
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 3.7e-110 402.5 279 69.5
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 2.2e-102 376.7 356 52.8
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 7.0e-101 371.7 245 71.8
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 7.8e-100 368.2 278 62.6
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 7.8e-84 315.1 218 68.3
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 2.5e-74 283.5 202 65.3
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 8.9e-72 275.0 214 59.8
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 1.2e-63 248.1 312 43.6
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 1.3e-62 244.6 304 45.4
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 1.3e-62 244.6 235 53.6
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 6.6e-59 232.3 222 55.4
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 9.6e-58 228.4 168 67.3
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 5.4e-53 212.6 186 58.6
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 2.8e-49 200.3 386 34.5
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 4.8e-49 199.5 416 36.3
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 8.7e-43 178.7 262 44.7
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 1.1e-32 145.2 211 42.2
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 1.3e-30 138.3 651 22.4
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 1.7e-30 137.9 287 31.0
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 4.2e-29 133.3 117 60.7
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 2.0e-26 124.4 116 54.3
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 7.4e-26 122.5 138 49.3
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 2.4e-24 117.5 121 53.7
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 2.4e-24 117.5 100 56.0
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 3.3e-18 97.1 102 53.9
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 2.6e-10 70.9 86 44.2
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 3.7e-09 67.0 385 22.6
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 1.4e-08 65.1 47 59.6
Atru.chr3.2624 Acer truncatum HOM05D004013 ORTHO05D004710 3.8e-06 57.0 35 71.4


User provided reference genes

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