Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L00004 Erythranthe guttata HOM05D006238 ORTHO05D007458 6.3e-58 228.4 262 100.0
Migut.I00441 Erythranthe guttata HOM05D006238 ORTHO05D007458 1.1e-54 217.6 262 96.6
MSTRG.22972 Avicennia marina HOM05D006238 ORTHO05D007458 2.6e-51 206.5 262 95.0
Potri.015G048800 Populus trichocarpa HOM05D006238 ORTHO05D007458 1.7e-50 203.8 262 91.2
Actinidia35026 Actinidia chinensis HOM05D006238 ORTHO05D007458 1.1e-49 201.1 262 92.7
Lj1g0017158 Lotus japonicus HOM05D006238 ORTHO05D007458 5.9e-48 195.3 262 85.5
Gohir.A09G243100 Gossypium hirsutum HOM05D006238 ORTHO05D007458 7.8e-48 194.9 262 91.2
Gohir.D09G243800 Gossypium hirsutum HOM05D006238 ORTHO05D007458 7.8e-48 194.9 262 91.2
Gorai.006G267600 Gossypium raimondii HOM05D006238 ORTHO05D007458 7.8e-48 194.9 262 91.2
Oeu038367.1 Olea europaea HOM05D006238 ORTHO05D007458 7.8e-48 194.9 262 91.2
Duzib205G0643 Durio zibethinus HOM05D006238 ORTHO05D007458 1.0e-47 194.5 262 90.8
Thecc.03G097700 Theobroma cacao HOM05D006238 ORTHO05D007458 1.3e-47 194.1 262 91.2
CSS0008812 Camellia sinensis var. sinensis HOM05D006238 ORTHO05D007458 1.7e-47 193.7 262 90.1
PGR044G1626 Punica granatum HOM05D006238 ORTHO05D007458 5.0e-47 192.2 262 91.6
CiPaw.11G050500 Carya illinoinensis HOM05D006238 ORTHO05D007458 6.6e-47 191.8 262 90.8
Cfa019307 Carpinus fangiana HOM05D006238 ORTHO05D007458 2.5e-46 189.9 262 90.1
Haze_07689 Corylus avellana HOM05D006238 ORTHO05D007458 2.5e-46 189.9 262 90.1
RcHm_v2.0_Chr7g0182671 Rosa chinensis HOM05D006238 ORTHO05D007458 4.3e-46 189.1 260 91.2
Sed0022301 Sechium edule HOM05D006238 ORTHO05D007458 4.3e-46 189.1 262 91.2
arahy.Tifrunner.gnm1.ann1.G7J9WL Arachis hypogaea HOM05D006238 ORTHO05D007458 7.3e-46 188.3 260 88.5
arahy.Tifrunner.gnm1.ann1.XMW6VU Arachis hypogaea HOM05D006238 ORTHO05D007458 7.3e-46 188.3 260 82.7
Medtr3g023830 Medicago truncatula HOM05D006238 ORTHO05D007458 9.5e-46 188.0 262 81.3
GSVIVG01007912001 Vitis vinifera HOM05D006238 ORTHO05D007458 9.5e-46 188.0 260 91.2
FvH4_5g14250 Fragaria vesca HOM05D006238 ORTHO05D007458 1.6e-45 187.2 260 90.8
Prupe.5G201600 Prunus persica HOM05D006238 ORTHO05D007458 1.6e-45 187.2 260 90.8
QL93p0191_0017 Quercus lobata HOM05D006238 ORTHO05D007458 3.6e-45 186.0 261 90.4
Solyc12g040320.2 Solanum lycopersicum HOM05D006238 ORTHO05D007458 4.7e-45 185.7 262 89.7
Sopen12g019730 Solanum pennellii HOM05D006238 ORTHO05D007458 6.1e-45 185.3 262 86.3
TWI81G0503 Tripterygium wilfordii HOM05D006238 ORTHO05D007458 6.1e-45 185.3 262 88.9
CANSAT80G2720 Cannabis sativa HOM05D006238 ORTHO05D007458 8.0e-45 184.9 262 89.3
QL10p018767 Quercus lobata HOM05D006238 ORTHO05D007458 8.0e-45 184.9 261 90.0
Lalb_Chr08g0238951 Lupinus albus HOM05D006238 ORTHO05D007458 1.4e-44 184.1 262 84.0
MD14G1209200 Malus domestica HOM05D006238 ORTHO05D007458 1.8e-44 183.7 262 90.1
Atru.chr9.382 Acer truncatum HOM05D006238 ORTHO05D007458 2.3e-44 183.3 263 90.1
Glyma.06G201600 Glycine max HOM05D006238 ORTHO05D007458 2.3e-44 183.3 262 83.6
ATR0064G078 Amborella trichopoda HOM05D006238 ORTHO05D007458 3.1e-44 183.0 261 90.0
Ciclev10021749m.g Citrus clementina HOM05D006238 ORTHO05D007458 3.1e-44 183.0 260 89.2
Glyma.04G164100 Glycine max HOM05D006238 ORTHO05D007458 3.1e-44 183.0 262 82.1
MELO3C017212.2 Cucumis melo HOM05D006238 ORTHO05D007458 4.0e-44 182.6 262 89.3
CsaV3_1G002770 Cucumis sativus L. HOM05D006238 ORTHO05D007458 4.0e-44 182.6 262 89.3
Ca_13804_v3 Cicer arietinum L. HOM05D006238 ORTHO05D007458 5.2e-44 182.2 262 82.8
TPR.G12219 Trifolium pratense HOM05D006238 ORTHO05D007458 5.2e-44 182.2 262 81.7
Eucgr.K02503 Eucalyptus grandis HOM05D006238 ORTHO05D007458 6.8e-44 181.8 262 87.0
Psat5g211960 Pisum sativum HOM05D006238 ORTHO05D007458 6.8e-44 181.8 262 88.5
Hund02602 Selenicereus undatus HOM05D006238 ORTHO05D007458 1.2e-43 181.0 261 88.5
COL.COLO4_22216 Corchorus olitorius HOM05D006238 ORTHO05D007458 1.5e-43 180.6 262 90.1
Lsat_1_v5_gn_4_110280 Lactuca sativa HOM05D006238 ORTHO05D007458 1.5e-43 180.6 262 89.7
SGA_v2.0_scaffold28G11764 Striga asiatica HOM05D006238 ORTHO05D007458 3.4e-43 179.5 262 84.0
Aqoxy3G00445 Aquilegia oxysepala HOM05D006238 ORTHO05D007458 5.8e-43 178.7 262 88.5
Gohir.A12G181100 Gossypium hirsutum HOM05D006238 ORTHO05D007458 2.2e-42 176.8 262 88.2
Gohir.D12G183800 Gossypium hirsutum HOM05D006238 ORTHO05D007458 2.9e-42 176.4 262 88.2
ClCG06G015770 Citrullus lanatus HOM05D006238 ORTHO05D007458 6.4e-42 175.3 262 87.8
EL10Ac5g11104 Beta vulgaris HOM05D006238 ORTHO05D007458 8.3e-42 174.9 261 86.2
Sopen03g034410 Solanum pennellii HOM05D006238 ORTHO05D007458 8.3e-42 174.9 262 88.9
ECA232G0231 Erigeron canadensis HOM05D000954 ORTHO05D000822 1.1e-41 174.5 263 89.0
PSO478G4259 Papaver somniferum HOM05D006238 ORTHO05D007458 2.4e-41 173.3 260 88.1
CAN.G479.27 Capsicum annuum HOM05D006238 ORTHO05D007458 9.2e-41 171.4 262 88.5
PSO017G1619 Papaver somniferum HOM05D006238 ORTHO05D007458 1.6e-40 170.6 260 87.3
Solyc03g115410.3 Solanum lycopersicum HOM05D006238 ORTHO05D007458 1.6e-40 170.6 262 88.2
BcaB05g21597 Brassica carinata HOM05D006238 ORTHO05D007458 7.8e-40 168.3 261 86.6
BcaNung04721 Brassica carinata HOM05D006238 ORTHO05D007458 1.3e-39 167.5 262 85.5
C02p03310 Brassica napus HOM05D006238 ORTHO05D007458 1.3e-39 167.5 262 85.5
BolC2t06295H Brassica oleracea HOM05D006238 ORTHO05D007458 1.3e-39 167.5 262 85.5
THA.LOC104801299 Tarenaya hassleriana HOM05D006238 ORTHO05D007458 1.3e-39 167.5 261 86.6
Sp6g35050 Schrenkiella parvula HOM05D006238 ORTHO05D007458 1.7e-39 167.2 261 85.8
C03p03970 Brassica napus HOM05D006238 ORTHO05D007458 3.9e-39 166.0 261 87.4
A03p03520 Brassica napus HOM05D006238 ORTHO05D007458 5.0e-39 165.6 261 87.4
BraA02t04934Z Brassica rapa HOM05D006238 ORTHO05D007458 5.0e-39 165.6 262 84.7
BraA03t09702Z Brassica rapa HOM05D006238 ORTHO05D007458 5.0e-39 165.6 261 87.4
Thhalv10014418m.g Eutrema salsugineum HOM05D006238 ORTHO05D007458 5.0e-39 165.6 261 85.8
HanXRQChr14g0439161 Helianthus annuus HOM05D006238 ORTHO05D007458 6.6e-39 165.2 262 86.6
BcaB01g05688 Brassica carinata HOM05D006238 ORTHO05D007458 8.6e-39 164.9 261 86.6
HanXRQChr02g0042551 Helianthus annuus HOM05D006238 ORTHO05D007458 8.6e-39 164.9 262 86.6
BcaB01g05644 Brassica carinata HOM05D006238 ORTHO05D007458 1.1e-38 164.5 261 87.0
BolC3t12934H Brassica oleracea HOM05D006238 ORTHO05D007458 1.1e-38 164.5 261 87.0
Nn4g23380 Nelumbo nucifera HOM05D006238 ORTHO05D007458 1.5e-38 164.1 262 40.1
BcaB01g05687 Brassica carinata HOM05D006238 ORTHO05D007458 1.9e-38 163.7 261 86.2
BcaNung04724 Brassica carinata HOM05D006238 ORTHO05D007458 2.5e-38 163.3 261 86.6
ECA247G0665 Erigeron canadensis HOM05D000006 ORTHO05D007458 1.2e-37 161.0 258 85.3
Carub.0006s0680 Capsella rubella HOM05D006238 ORTHO05D007458 2.1e-37 160.2 261 84.7
AL6G18240 Arabidopsis lyrata HOM05D006238 ORTHO05D007458 3.6e-37 159.5 261 84.3
Aa31LG3G18600 Aethionema arabicum HOM05D006238 ORTHO05D007458 1.1e-36 157.9 284 68.0
AT5G07910 Arabidopsis thaliana HOM05D006238 ORTHO05D007458 1.4e-36 157.5 261 83.9
CARHR205290 Cardamine hirsuta HOM05D006238 ORTHO05D007458 1.4e-36 157.5 261 83.9
PGSC0003DMG401024548 Solanum tuberosum HOM05D006238 ORTHO05D007458 7.5e-35 151.8 265 83.4
Nitab4.5_0004284g0060 Nicotiana tabacum HOM05D006238 ORTHO05D007458 9.8e-35 151.4 262 62.6
HPP92_013436 Vanilla planifolia HOM05D001674 ORTHO05D008374 2.2e-34 150.2 262 83.2
PSO384G2798 Papaver somniferum HOM05D006238 ORTHO05D007458 8.3e-34 148.3 262 84.7
Nitab4.5_0001961g0050 Nicotiana tabacum HOM05D006238 ORTHO05D007458 1.1e-33 147.9 299 54.5
PSO339G0502 Papaver somniferum HOM05D006238 ORTHO05D007458 1.1e-33 147.9 262 84.7
Nitab4.5_0001410g0100 Nicotiana tabacum HOM05D006238 ORTHO05D007458 1.9e-33 147.1 269 84.4
SalBow5G1318 Salvia bowleyana HOM05D006238 ORTHO05D007458 2.4e-33 146.7 337 47.5
MD06G1200000 Malus domestica HOM05D006238 ORTHO05D007458 7.1e-33 145.2 269 61.7
Peaxi162Scf00106g00109 Petunia axillaris HOM05D006238 ORTHO05D007458 2.3e-31 140.2 287 77.7
Lsat_1_v5_gn_1_13640 Lactuca sativa HOM05D006238 ORTHO05D007458 3.9e-31 139.4 261 82.4
FAN08G1023 Fragaria x ananassa HOM05D000113 ORTHO05D002571 6.6e-31 138.7 251 84.5
FAN13G1324 Fragaria x ananassa HOM05D000113 ORTHO05D002571 1.9e-30 137.1 253 85.0
Cc04_g15060 Coffea canephora HOM05D006238 ORTHO05D007458 2.8e-29 133.3 234 88.9
Gorai.008G197100 Gossypium raimondii HOM05D006238 ORTHO05D007458 4.7e-29 132.5 236 88.6
DCAR_016594 Daucus carota HOM05D006238 ORTHO05D007458 1.4e-28 131.0 231 90.9
Oeu062485.1 Olea europaea HOM05D006238 ORTHO05D007458 1.2e-27 127.9 76 84.2
Cpa.g.sc94.13 Carica papaya HOM05D006238 ORTHO05D007458 5.8e-27 125.6 75 81.3
AUR62008501 Chenopodium quinoa HOM05D006238 ORTHO05D007458 9.9e-27 124.8 76 78.9
Sabra15G0078500 Salix brachista HOM05D006238 ORTHO05D007458 8.3e-26 121.7 97 66.0
Sc10g0009770 Simmondsia chinensis HOM05D006238 ORTHO05D007458 1.1e-25 121.3 73 80.8
Pp3c19_5770 Physcomitrium patens HOM05D006238 ORTHO05D007458 2.4e-25 120.2 262 77.5
Zm00001eb008470 Zea mays HOM05D006238 ORTHO05D007458 2.4e-25 120.2 268 75.0
AUR62021591 Chenopodium quinoa HOM05D006238 ORTHO05D007458 3.2e-25 119.8 86 72.1
Dinv38791 Davidia involucrata HOM05D006238 ORTHO05D007458 2.1e-24 117.1 64 87.5
Cpa.g.sc94.12 Carica papaya HOM05D006238 ORTHO05D007458 1.3e-23 114.4 63 84.1
Phvul.009G193701 Phaseolus vulgaris HOM05D006238 ORTHO05D007458 1.3e-23 114.4 63 87.3
Rhsim12G0152200 Rhododendron simsii HOM05D006238 ORTHO05D007458 2.3e-23 113.6 319 65.2
Manes.06G087000 Manihot esculenta HOM05D006238 ORTHO05D007458 1.1e-22 111.3 63 85.7
SMO364G0258 Selaginella moellendorffii HOM05D006238 ORTHO05D007458 1.1e-22 111.3 260 71.9
PGSC0003DMG400005395 Solanum tuberosum HOM05D006238 ORTHO05D007458 1.5e-22 110.9 63 82.5
QL05p088277 Quercus lobata HOM05D003602 ORTHO05D007458 3.3e-22 109.8 62 83.9
Nitab4.5_0005160g0060 Nicotiana tabacum HOM05D006238 ORTHO05D007458 7.3e-22 108.6 62 82.3
Os03g0212200 Oryza sativa ssp. japonica HOM05D006238 ORTHO05D007458 2.4e-20 103.6 75 64.0
HPP92_027112 Vanilla planifolia HOM05D006238 ORTHO05D007458 2.6e-19 100.1 63 74.6
CDE10G0764 Ceratophyllum demersum HOM05D000773 ORTHO05D000588 1.3e-18 97.8 76 61.8
Dinv10691 Davidia involucrata HOM05D000773 ORTHO05D000588 1.7e-18 97.4 207 92.3
Hund26925 Selenicereus undatus HOM05D006238 ORTHO05D007458 1.7e-18 97.4 66 72.7
vmacro16511 Vaccinium macrocarpon HOM05D006238 ORTHO05D007458 5.4e-17 92.4 339 53.4
Lj5A105G57 Lonicera japonica HOM05D006238 ORTHO05D007458 7.1e-17 92.0 128 44.5
AagrBONN_evm.TU.Sc2ySwM_228.2402 Anthoceros agrestis HOM05D006238 ORTHO05D007458 1.2e-16 91.3 63 60.3
Peaxi162Scf00201g00133 Petunia axillaris HOM05D006238 ORTHO05D007458 6.0e-16 89.0 73 67.1
Hund26924 Selenicereus undatus HOM05D006238 ORTHO05D007458 5.1e-15 85.9 75 65.3
CBR_g18689 Chara braunii HOM05D006238 ORTHO05D007458 2.6e-11 73.6 59 52.5
SMO198G0061 Selaginella moellendorffii HOM05D006395 ORTHO05D007894 1.1e-09 68.2 61 49.2
Mapoly0043s0125 Marchantia polymorpha HOM05D006395 ORTHO05D007894 1.9e-09 67.4 249 49.4
Cre12.g503600 Chlamydomonas reinhardtii HOM05D006238 ORTHO05D007458 2.4e-09 67.0 61 49.2
MCO07G688 Micromonas commoda HOM05D006238 ORTHO05D007458 5.4e-09 65.9 270 39.6
AagrBONN_evm.TU.Sc2ySwM_228.749 Anthoceros agrestis HOM05D006395 ORTHO05D007894 9.3e-09 65.1 60 46.7
Ah.11g047980 Amaranthus hybridus HOM05D006238 ORTHO05D007458 7.8e-08 62.0 70 48.6
Hund05040 Selenicereus undatus HOM05D006395 ORTHO05D007894 1.3e-07 61.2 61 45.9
Solyc06g007250.4 Solanum lycopersicum HOM05D006395 ORTHO05D007894 1.3e-07 61.2 61 45.9
Sopen06g002210 Solanum pennellii HOM05D006395 ORTHO05D007894 1.3e-07 61.2 61 45.9
ATR0174G031 Amborella trichopoda HOM05D006395 ORTHO05D007894 1.7e-07 60.8 61 47.5
Sc06g0008170 Simmondsia chinensis HOM05D006395 ORTHO05D007894 2.3e-07 60.5 68 41.2
PGSC0003DMG400020546 Solanum tuberosum HOM05D006395 ORTHO05D007894 2.3e-07 60.5 61 45.9
Nitab4.5_0000967g0070 Nicotiana tabacum HOM05D006395 ORTHO05D007894 3.0e-07 60.1 61 45.9
Peaxi162Scf00053g02113 Petunia axillaris HOM05D006395 ORTHO05D007894 3.0e-07 60.1 61 45.9
CBR_g52452 Chara braunii HOM05D006395 ORTHO05D007458 3.9e-07 59.7 60 41.7
ClCG02G019360 Citrullus lanatus HOM05D006395 ORTHO05D007894 3.9e-07 59.7 76 39.5
CsaV3_6G015980 Cucumis sativus L. HOM05D006395 ORTHO05D007894 3.9e-07 59.7 76 39.5
Zm00001eb046860 Zea mays HOM05D006395 ORTHO05D007894 3.9e-07 59.7 63 44.4
MELO3C026838.2 Cucumis melo HOM05D006395 ORTHO05D007894 5.1e-07 59.3 76 39.5
PRCOL_00001761 Prasinoderma coloniale HOM05D006238 ORTHO05D007458 5.1e-07 59.3 62 40.3
Rhsim13G0066200 Rhododendron simsii HOM05D006395 ORTHO05D007894 5.1e-07 59.3 68 38.2
MBI15_g36485_MAGBIO Magnolia biondii HOM05D006395 ORTHO05D007894 8.7e-07 58.5 62 45.2
QL93p0869_0056 Quercus lobata HOM05D000176 ORTHO05D000106 1.1e-06 58.2 31 87.1
SGA_v2.0_scaffold20G09294 Striga asiatica HOM05D006395 ORTHO05D007894 1.1e-06 58.2 62 45.2
ATR0174G042 Amborella trichopoda HOM05D006395 ORTHO05D007894 1.5e-06 57.8 60 45.0
CAN.G241.20 Capsicum annuum HOM05D006395 ORTHO05D007894 1.5e-06 57.8 57 45.6
PGR102G2618 Punica granatum HOM05D006395 ORTHO05D007894 1.5e-06 57.8 61 39.3
vmacro02938 Vaccinium macrocarpon HOM05D006395 ORTHO05D007894 1.5e-06 57.8 68 36.8
GSVIVG01024681001 Vitis vinifera HOM05D006395 ORTHO05D007894 1.5e-06 57.8 61 45.9
Lj2C1089G4 Lonicera japonica HOM05D006395 ORTHO05D007894 1.9e-06 57.4 69 39.1
Lj9A530T24 Lonicera japonica HOM05D006395 ORTHO05D007894 1.9e-06 57.4 69 39.1
Nitab4.5_0001941g0070 Nicotiana tabacum HOM05D006395 ORTHO05D007894 1.9e-06 57.4 61 44.3
Aqoxy1G01323 Aquilegia oxysepala HOM05D006395 ORTHO05D007894 2.5e-06 57.0 60 45.0
Cc01_g14640 Coffea canephora HOM05D006395 ORTHO05D007894 2.5e-06 57.0 70 37.1
Cc03_g12880 Coffea canephora HOM05D006395 ORTHO05D007894 2.5e-06 57.0 70 37.1
Nn2g10958 Nelumbo nucifera HOM05D006395 ORTHO05D007894 2.5e-06 57.0 61 44.3
Pp3c8_15530 Physcomitrium patens HOM05D006395 ORTHO05D007894 3.3e-06 56.6 69 43.5
Ca_14986_v3 Cicer arietinum L. HOM05D006395 ORTHO05D007894 4.3e-06 56.2 74 39.2
AL4G24880 Arabidopsis lyrata HOM05D006395 ORTHO05D007894 5.6e-06 55.8 66 40.9
DCAR_018217 Daucus carota HOM05D006395 ORTHO05D007894 5.6e-06 55.8 70 37.1
Gohir.A03G027300 Gossypium hirsutum HOM05D006395 ORTHO05D007894 5.6e-06 55.8 60 40.0
Gohir.D03G141400 Gossypium hirsutum HOM05D006395 ORTHO05D007894 5.6e-06 55.8 60 40.0
Gorai.003G148100 Gossypium raimondii HOM05D006395 ORTHO05D007894 5.6e-06 55.8 60 40.0
TAR357G0003 Trochodendron aralioides HOM05D006395 ORTHO05D007894 5.6e-06 55.8 61 42.6
QL10p018168 Quercus lobata HOM05D006238 ORTHO05D007458 7.3e-06 55.5 44 54.5
Atru.chr3.4150 Acer truncatum HOM05D006395 ORTHO05D007894 9.6e-06 55.1 76 39.5
SEGI_13349 Sequoiadendron giganteum HOM05D006395 ORTHO05D007894 9.6e-06 55.1 61 42.6


User provided reference genes

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