Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.K01513 Erythranthe guttata HOM05D005629 ORTHO05D008000 8.9e-145 516.9 263 100.0
Migut.F00066 Erythranthe guttata HOM05D005629 ORTHO05D008000 6.4e-127 457.6 273 89.0
Migut.H00778 Erythranthe guttata HOM05D005629 ORTHO05D008000 1.8e-124 449.5 273 87.9
SGA_v2.0_scaffold253G45198 Striga asiatica HOM05D005629 ORTHO05D008000 1.0e-116 423.7 273 81.3
SalBow4G2288 Salvia bowleyana HOM05D005629 ORTHO05D008000 2.3e-116 422.5 264 84.5
CiPaw.03G055300 Carya illinoinensis HOM05D005629 ORTHO05D008000 8.2e-114 414.1 273 80.6
Nitab4.5_0000559g0400 Nicotiana tabacum HOM05D005629 ORTHO05D008000 8.2e-114 414.1 273 79.1
CAN.G1751.5 Capsicum annuum HOM05D005629 ORTHO05D008000 1.4e-113 413.3 270 79.6
GSVIVG01033097001 Vitis vinifera HOM05D005629 ORTHO05D008000 2.4e-113 412.5 273 79.9
Nitab4.5_0005161g0130 Nicotiana tabacum HOM05D005629 ORTHO05D008000 4.1e-113 411.8 261 82.0
Eucgr.I01649 Eucalyptus grandis HOM05D005629 ORTHO05D008000 9.0e-113 410.6 273 78.8
CANSAT64G1539 Cannabis sativa HOM05D005629 ORTHO05D008000 1.5e-112 409.8 261 81.6
PGSC0003DMG400013378 Solanum tuberosum HOM05D005629 ORTHO05D008000 2.6e-112 409.1 273 78.4
Atru.chr6.2566 Acer truncatum HOM05D005629 ORTHO05D008000 5.9e-112 407.9 273 78.0
QL02p071469 Quercus lobata HOM05D005629 ORTHO05D008000 1.7e-111 406.4 272 77.6
unitig_52.g17654 Utricularia gibba HOM05D005629 ORTHO05D008000 1.7e-111 406.4 264 79.9
Actinidia36200 Actinidia chinensis HOM05D005629 ORTHO05D008000 6.5e-111 404.4 273 77.7
Cfa007230 Carpinus fangiana HOM05D005629 ORTHO05D008000 6.5e-111 404.4 273 78.4
Cc07_g00800 Coffea canephora HOM05D005629 ORTHO05D008000 6.5e-111 404.4 272 76.8
COL.COLO4_17207 Corchorus olitorius HOM05D005629 ORTHO05D008000 6.5e-111 404.4 269 78.1
arahy.Tifrunner.gnm1.ann1.26H0NE Arachis hypogaea HOM05D005629 ORTHO05D008000 8.5e-111 404.1 270 77.8
Thecc.04G035600 Theobroma cacao HOM05D005629 ORTHO05D008000 8.5e-111 404.1 274 76.6
Lj1g0025061 Lotus japonicus HOM05D005629 ORTHO05D008000 1.1e-110 403.7 273 77.7
Glyma.16G056900 Glycine max HOM05D005629 ORTHO05D008000 1.4e-110 403.3 261 79.3
Hma1.2p1_1278F.1_g272330 Hydrangea macrophylla HOM05D005629 ORTHO05D008000 1.4e-110 403.3 269 78.4
FAN09G2642 Fragaria x ananassa HOM05D005629 ORTHO05D008000 1.9e-110 402.9 261 79.7
CSS0048682 Camellia sinensis var. sinensis HOM05D005629 ORTHO05D004503 2.5e-110 402.5 260 81.5
Solyc03g005000.4 Solanum lycopersicum HOM05D005629 ORTHO05D008000 2.5e-110 402.5 273 76.9
Sopen03g001010 Solanum pennellii HOM05D005629 ORTHO05D008000 2.5e-110 402.5 273 76.9
Lju41A52T99 Lonicera japonica HOM05D005629 ORTHO05D008000 4.2e-110 401.7 287 74.6
Phvul.001G094100 Phaseolus vulgaris HOM05D005629 ORTHO05D008000 5.5e-110 401.4 261 78.9
FvH4_6g53470 Fragaria vesca HOM05D005629 ORTHO05D008000 7.2e-110 401.0 261 80.1
Gorai.001G271100 Gossypium raimondii HOM05D005629 ORTHO05D008000 7.2e-110 401.0 274 76.3
Sc03g0006560 Simmondsia chinensis HOM05D005629 ORTHO05D008000 7.2e-110 401.0 273 75.8
RcHm_v2.0_Chr2g0175511 Rosa chinensis HOM05D005629 ORTHO05D008000 9.3e-110 400.6 261 79.7
Gohir.D07G235300 Gossypium hirsutum HOM05D005629 ORTHO05D008000 1.2e-109 400.2 273 76.2
Prupe.3G305800 Prunus persica HOM05D005629 ORTHO05D008000 1.2e-109 400.2 272 77.2
Ciclev10015840m.g Citrus clementina HOM05D005629 ORTHO05D008000 1.6e-109 399.8 269 77.3
Lalb_Chr14g0363391 Lupinus albus HOM05D005629 ORTHO05D008000 1.6e-109 399.8 274 77.0
Peaxi162Scf00700g00023 Petunia axillaris HOM05D005629 ORTHO05D008000 1.6e-109 399.8 303 71.6
Sed0004120 Sechium edule HOM05D005629 ORTHO05D008000 2.1e-109 399.4 273 74.4
ClCG05G013480 Citrullus lanatus HOM05D005629 ORTHO05D008000 2.7e-109 399.1 261 77.8
DCAR_011309 Daucus carota HOM05D005629 ORTHO05D008000 2.7e-109 399.1 273 76.6
ECA246G2396 Erigeron canadensis HOM05D005629 ORTHO05D008000 2.7e-109 399.1 261 78.5
VMungo1383G2395 Vigna mungo HOM05D005629 ORTHO05D008000 3.6e-109 398.7 261 78.2
Dinv33339 Davidia involucrata HOM05D005629 ORTHO05D008000 7.9e-109 397.5 260 79.2
Haze_14872 Corylus avellana HOM05D005629 ORTHO05D008000 1.0e-108 397.1 261 79.7
Gohir.A07G228100 Gossypium hirsutum HOM05D005629 ORTHO05D008000 1.8e-108 396.4 274 75.5
TWI56G1125 Tripterygium wilfordii HOM05D005629 ORTHO05D008000 2.3e-108 396.0 270 76.7
MD09G1011200 Malus domestica HOM05D005629 ORTHO05D008000 3.0e-108 395.6 260 79.2
PSO017G3506 Papaver somniferum HOM05D005629 ORTHO05D008000 3.0e-108 395.6 273 75.1
Oeu058781.1 Olea europaea HOM05D005629 ORTHO05D008000 3.9e-108 395.2 272 76.8
HanXRQChr17g0550111 Helianthus annuus HOM05D005629 ORTHO05D008000 6.7e-108 394.4 273 75.5
BcaC06g31019 Brassica carinata HOM05D005629 ORTHO05D008000 8.7e-108 394.0 273 74.4
BcaC06g33857 Brassica carinata HOM05D005629 ORTHO05D008000 8.7e-108 394.0 273 74.4
Gohir.A11G064500 Gossypium hirsutum HOM05D005629 ORTHO05D008000 8.7e-108 394.0 261 77.0
Actinidia05920 Actinidia chinensis HOM05D005629 ORTHO05D008000 1.1e-107 393.7 273 76.6
PGR142G0641 Punica granatum HOM05D005629 ORTHO05D008000 1.1e-107 393.7 273 75.1
EL10Ac6g15359 Beta vulgaris HOM05D005629 ORTHO05D008000 1.9e-107 392.9 273 74.7
CsaV3_3G027030 Cucumis sativus L. HOM05D005629 ORTHO05D008000 1.9e-107 392.9 273 73.3
Gohir.D11G068800 Gossypium hirsutum HOM05D005629 ORTHO05D008000 1.9e-107 392.9 261 76.6
Sp2g16240 Schrenkiella parvula HOM05D005629 ORTHO05D008000 1.9e-107 392.9 273 74.4
Aqoxy3G01541 Aquilegia oxysepala HOM05D005629 ORTHO05D008000 2.5e-107 392.5 273 75.1
Gorai.007G073600 Gossypium raimondii HOM05D005629 ORTHO05D008000 2.5e-107 392.5 262 76.3
Carub.0005s0536 Capsella rubella HOM05D005629 ORTHO05D008000 5.7e-107 391.3 273 74.4
Psat3g164800 Pisum sativum HOM05D005629 ORTHO05D008000 5.7e-107 391.3 261 77.4
AL5G16240 Arabidopsis lyrata HOM05D005629 ORTHO05D008000 7.4e-107 391.0 273 74.4
BcaC06g33860 Brassica carinata HOM05D005629 ORTHO05D008000 9.7e-107 390.6 273 73.3
A06p41480 Brassica napus HOM05D005629 ORTHO05D008000 9.7e-107 390.6 273 73.3
C07p36170 Brassica napus HOM05D005629 ORTHO05D008000 9.7e-107 390.6 273 73.3
BraA06t27073Z Brassica rapa HOM05D005629 ORTHO05D008000 9.7e-107 390.6 273 73.3
Cpa.g.sc171.18 Carica papaya HOM05D005629 ORTHO05D008000 9.7e-107 390.6 261 77.4
Medtr7g033405 Medicago truncatula HOM05D005629 ORTHO05D008000 1.6e-106 389.8 261 77.0
BolC7t44133H Brassica oleracea HOM05D005629 ORTHO05D008000 2.8e-106 389.0 273 72.9
THA.LOC104825621 Tarenaya hassleriana HOM05D005629 ORTHO05D008000 2.8e-106 389.0 273 73.6
Potri.001G330800 Populus trichocarpa HOM05D005629 ORTHO05D008000 4.8e-106 388.3 273 75.8
Thhalv10004520m.g Eutrema salsugineum HOM05D005629 ORTHO05D008000 8.2e-106 387.5 273 73.6
Ah.02g120470 Amaranthus hybridus HOM05D005629 ORTHO05D008000 1.1e-105 387.1 261 75.9
AT3G27110 Arabidopsis thaliana HOM05D005629 ORTHO05D008000 1.4e-105 386.7 273 74.0
Ca_26782_v3 Cicer arietinum L. HOM05D005629 ORTHO05D008000 1.8e-105 386.3 261 75.9
TPR.G38340 Trifolium pratense HOM05D005629 ORTHO05D008000 4.1e-105 385.2 261 77.4
ATR0561G239 Amborella trichopoda HOM05D005629 ORTHO05D008000 1.5e-104 383.3 261 74.7
Aa31LG2G5490 Aethionema arabicum HOM05D005629 ORTHO05D008000 2.6e-104 382.5 261 75.1
Sabra16G0211800 Salix brachista HOM05D005629 ORTHO05D008000 1.2e-101 373.6 266 75.6
Os01g0970700 Oryza sativa ssp. japonica HOM05D005629 ORTHO05D008000 2.7e-101 372.5 259 73.0
Zm00001eb127160 Zea mays HOM05D005629 ORTHO05D008000 2.7e-101 372.5 263 71.1
vmacro05954 Vaccinium macrocarpon HOM05D005629 ORTHO05D008000 4.6e-101 371.7 260 75.4
Rhsim10G0006600 Rhododendron simsii HOM05D005629 ORTHO05D008000 1.0e-100 370.5 260 75.8
Dinv25662 Davidia involucrata HOM05D005629 ORTHO05D000552 1.1e-99 367.1 222 85.1
HPP92_024304 Vanilla planifolia HOM05D005629 ORTHO05D008000 3.7e-98 362.1 260 71.2
SEGI_10761 Sequoiadendron giganteum HOM05D005629 ORTHO05D008000 4.8e-98 361.7 260 70.8
HPP92_024293 Vanilla planifolia HOM05D005629 ORTHO05D008000 5.3e-97 358.2 260 70.4
Migut.G01029 Erythranthe guttata HOM05D005629 ORTHO05D008000 9.1e-97 357.5 256 78.9
Mapoly0033s0112 Marchantia polymorpha HOM05D005629 ORTHO05D008000 1.2e-96 357.1 260 69.2
Duzib264G0865 Durio zibethinus HOM05D005629 ORTHO05D008000 5.0e-95 351.7 274 68.6
Gorai.004G126700 Gossypium raimondii HOM05D005629 ORTHO05D008000 8.5e-95 350.9 245 73.9
Gohir.D08G117950 Gossypium hirsutum HOM05D005629 ORTHO05D008000 7.2e-94 347.8 245 73.1
Hund04337 Selenicereus undatus HOM05D005629 ORTHO05D008000 7.2e-94 347.8 309 62.5
AUR62003511 Chenopodium quinoa HOM05D005629 ORTHO05D008000 1.2e-93 347.1 245 72.7
AUR62017822 Chenopodium quinoa HOM05D005629 ORTHO05D008000 1.2e-93 347.1 245 72.7
AagrBONN_evm.TU.Sc2ySwM_117.2248 Anthoceros agrestis HOM05D005629 ORTHO05D008000 2.9e-87 325.9 211 74.4
Nn4g22342 Nelumbo nucifera HOM05D005629 ORTHO05D008000 4.8e-82 308.5 273 63.4
MCO03G471 Micromonas commoda HOM05D005629 ORTHO05D008000 1.0e-79 300.8 259 58.3
Cre14.g620150 Chlamydomonas reinhardtii HOM05D005629 ORTHO05D008000 5.5e-78 295.0 261 59.0
Lsat_1_v5_gn_9_1240 Lactuca sativa HOM05D005629 ORTHO05D008000 4.5e-72 275.4 159 83.6
FAN02G3075 Fragaria x ananassa HOM05D005629 ORTHO05D008000 6.8e-68 261.5 184 76.1
FAN05G5024 Fragaria x ananassa HOM05D005629 ORTHO05D008000 6.8e-68 261.5 184 75.5
Manes.15G160600 Manihot esculenta HOM05D005629 ORTHO05D008000 4.9e-66 255.4 183 74.3
PRCOL_00001739 Prasinoderma coloniale HOM05D005629 ORTHO05D008000 1.6e-64 250.4 262 49.2
MELO3C014882.2 Cucumis melo HOM05D005629 ORTHO05D008000 2.7e-64 249.6 184 69.6
CARHR148330 Cardamine hirsuta HOM05D005629 ORTHO05D008000 1.5e-62 243.8 183 69.9
Zm00001eb202540 Zea mays HOM05D002249 ORTHO05D002443 2.6e-59 233.0 212 58.0
FAN14G4117 Fragaria x ananassa HOM05D005629 ORTHO05D008000 2.4e-57 226.5 248 56.0
Migut.K01251 Erythranthe guttata HOM05D005629 ORTHO05D008000 1.2e-53 214.2 164 75.0
CDE05G1086 Ceratophyllum demersum HOM05D001132 ORTHO05D002510 2.3e-47 193.4 147 68.0
TAR622G1261 Trochodendron aralioides HOM05D005629 ORTHO05D008000 1.1e-46 191.0 119 80.7
Zm00001eb174780 Zea mays HOM05D005629 ORTHO05D008000 6.2e-45 185.3 142 66.9
Zm00001eb427710 Zea mays HOM05D005629 ORTHO05D003422 6.2e-45 185.3 132 68.9
Zm00001eb332250 Zea mays HOM05D002343 ORTHO05D002443 1.3e-42 177.6 128 68.8
Zm00001eb146790 Zea mays HOM05D005629 ORTHO05D003607 2.9e-42 176.4 123 70.7
FvH4_6g53420 Fragaria vesca HOM05D005629 ORTHO05D022663 4.3e-38 162.5 226 44.7
FvH4_6g53390 Fragaria vesca HOM05D005629 ORTHO05D022663 5.6e-38 162.2 227 44.5
FvH4_6g53350 Fragaria vesca HOM05D005629 ORTHO05D022663 9.5e-38 161.4 228 43.9
FAN02G3684 Fragaria x ananassa HOM05D005629 ORTHO05D008000 6.6e-31 138.7 72 91.7
CDE02G4678 Ceratophyllum demersum HOM05D000139 ORTHO05D000103 9.6e-30 134.8 79 83.5
MELO3C032122.2 Cucumis melo HOM05D005629 ORTHO05D008000 1.5e-27 127.5 63 93.7
arahy.Tifrunner.gnm1.ann1.0H9GWB Arachis hypogaea HOM05D005629 ORTHO05D008000 1.6e-24 117.5 75 78.7
Zm00001eb048250 Zea mays HOM05D005629 ORTHO05D008000 2.1e-24 117.1 74 73.0
FAN14G1519 Fragaria x ananassa HOM05D005629 ORTHO05D022663 1.5e-22 110.9 227 37.0
PRCOL_00005410 Prasinoderma coloniale HOM05D005629 ORTHO05D333266 4.3e-22 109.4 238 31.9
FAN02G2357 Fragaria x ananassa HOM05D005629 ORTHO05D008000 3.8e-18 96.3 102 50.0
A02p35090 Brassica napus HOM05D005629 ORTHO05D008000 4.2e-17 92.8 81 61.7
AagrBONN_evm.TU.Sc2ySwM_228.873 Anthoceros agrestis HOM05D005629 ORTHO05D008000 1.2e-16 91.3 301 25.2
BraA02t08515Z Brassica rapa HOM05D005629 ORTHO05D008000 3.9e-15 86.3 77 59.7
CAN.G792.7 Capsicum annuum HOM05D002518 ORTHO05D002630 2.1e-08 63.9 38 78.9
Zm00001eb059400 Zea mays HOM05D003056 ORTHO05D003422 2.3e-07 60.5 59 59.3
BolC2t11443H Brassica oleracea HOM05D005629 ORTHO05D008000 1.5e-06 57.8 48 64.6
FvH4_6g53451 Fragaria vesca HOM05D005629 ORTHO05D196308 2.5e-06 57.0 73 45.2


User provided reference genes

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