Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.K01417 Erythranthe guttata HOM05D005949 ORTHO05D006945 1.5e-221 772.7 446 100.0
MSTRG.15541 Avicennia marina HOM05D005949 ORTHO05D006945 5.7e-192 674.5 443 75.6
SGA_v2.0_scaffold47G17523 Striga asiatica HOM05D005949 ORTHO05D006945 1.7e-175 619.8 438 70.5
Nitab4.5_0001562g0070 Nicotiana tabacum HOM05D005949 ORTHO05D006945 1.6e-165 586.6 444 65.5
CSS0029670 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 2.1e-162 576.2 434 66.4
RhsimUnG0006400 Rhododendron simsii HOM05D005949 ORTHO05D006945 2.1e-162 576.2 443 65.5
RhsimUnG0087200 Rhododendron simsii HOM05D005949 ORTHO05D006945 2.1e-162 576.2 443 65.5
TAR374G0398 Trochodendron aralioides HOM05D005949 ORTHO05D006945 4.7e-162 575.1 444 63.7
Nitab4.5_0006683g0100 Nicotiana tabacum HOM05D005949 ORTHO05D006945 6.1e-162 574.7 441 65.3
CAN.G1235.24 Capsicum annuum HOM05D005949 ORTHO05D006945 6.8e-161 571.2 448 64.7
Nn2g12389 Nelumbo nucifera HOM05D005949 ORTHO05D006945 2.7e-157 559.3 438 69.6
GSVIVG01032367001 Vitis vinifera HOM05D005949 ORTHO05D006945 6.6e-156 554.7 444 68.5
HanXRQChr15g0486811 Helianthus annuus HOM05D005949 ORTHO05D006945 3.6e-154 548.9 438 62.3
Manes.17G110300 Manihot esculenta HOM05D005949 ORTHO05D006945 8.0e-154 547.7 438 60.7
PGSC0003DMG400018653 Solanum tuberosum HOM05D005949 ORTHO05D006945 8.9e-153 544.3 438 62.6
Lj7C602T3 Lonicera japonica HOM05D005949 ORTHO05D006945 1.2e-152 543.9 461 61.2
Haze_14768 Corylus avellana HOM05D005949 ORTHO05D006945 3.4e-152 542.3 448 65.4
CiPaw.03G046600 Carya illinoinensis HOM05D005949 ORTHO05D006945 1.7e-151 540.0 442 71.9
Solyc01g112020.3 Solanum lycopersicum HOM05D005949 ORTHO05D006945 2.9e-151 539.3 438 62.1
Sopen01g054070 Solanum pennellii HOM05D005949 ORTHO05D006945 2.9e-151 539.3 438 62.1
Lsat_1_v5_gn_4_184520 Lactuca sativa HOM05D005949 ORTHO05D006945 8.3e-151 537.7 433 61.2
Cfa007328 Carpinus fangiana HOM05D005949 ORTHO05D006945 2.4e-150 536.2 437 66.1
ECA232G4961 Erigeron canadensis HOM05D005949 ORTHO05D006945 3.5e-149 532.3 445 60.4
QL02p073821 Quercus lobata HOM05D005949 ORTHO05D006945 1.1e-147 527.3 445 64.9
Sed0011104 Sechium edule HOM05D005949 ORTHO05D006945 1.5e-147 526.9 441 68.7
Ciclev10015245m.g Citrus clementina HOM05D005949 ORTHO05D006945 2.8e-146 522.7 434 59.4
ClCG10G013730 Citrullus lanatus HOM05D005949 ORTHO05D006945 3.6e-146 522.3 441 67.3
Duzib264G1167 Durio zibethinus HOM05D005949 ORTHO05D006945 3.6e-146 522.3 438 59.1
Cc09_g05780 Coffea canephora HOM05D005949 ORTHO05D006945 1.8e-145 520.0 440 71.4
Aqoxy5G03678 Aquilegia oxysepala HOM05D005949 ORTHO05D006945 8.9e-145 517.7 446 58.5
Eucgr.J02262 Eucalyptus grandis HOM05D005949 ORTHO05D006945 1.7e-143 513.5 445 62.7
THA.LOC104819734 Tarenaya hassleriana HOM05D005949 ORTHO05D006945 1.9e-142 510.0 441 69.4
Glyma.05G115200 Glycine max HOM05D005949 ORTHO05D006945 1.2e-141 507.3 443 62.8
COL.COLO4_29188 Corchorus olitorius HOM05D005949 ORTHO05D006945 3.5e-141 505.8 433 63.3
Peaxi162Scf00420g00016 Petunia axillaris HOM05D005949 ORTHO05D006945 1.3e-140 503.8 443 60.0
Glyma.19G052100 Glycine max HOM05D005949 ORTHO05D006945 3.0e-140 502.7 443 63.9
PGR083G1217 Punica granatum HOM05D005949 ORTHO05D006945 6.6e-140 501.5 449 61.5
CANSAT64G2213 Cannabis sativa HOM05D005949 ORTHO05D006945 8.6e-140 501.1 445 60.9
Gohir.D10G085800 Gossypium hirsutum HOM05D005949 ORTHO05D006945 1.9e-139 500.0 442 62.7
Phvul.004G060400 Phaseolus vulgaris HOM05D005949 ORTHO05D006945 2.5e-139 499.6 444 61.0
Gorai.011G094000 Gossypium raimondii HOM05D005949 ORTHO05D006945 9.5e-139 497.7 437 62.9
MD17G1021300 Malus domestica HOM05D005949 ORTHO05D006945 5.2e-137 491.9 440 66.1
MD09G1021300 Malus domestica HOM05D005949 ORTHO05D006945 6.8e-137 491.5 442 66.3
Gohir.A10G101600 Gossypium hirsutum HOM05D005949 ORTHO05D006945 5.8e-136 488.4 437 62.0
TWI12G1469 Tripterygium wilfordii HOM05D005949 ORTHO05D006945 1.7e-135 486.9 438 62.6
VMungo0464G1442 Vigna mungo HOM05D005949 ORTHO05D006945 4.9e-135 485.3 426 65.7
Lalb_Chr06g0174481 Lupinus albus HOM05D005949 ORTHO05D006945 4.1e-134 482.3 444 63.1
EL10Ac6g14123 Beta vulgaris HOM05D005949 ORTHO05D006945 5.4e-134 481.9 508 49.6
Lj2g0004695 Lotus japonicus HOM05D005949 ORTHO05D006945 7.1e-134 481.5 444 64.9
Thecc.04G021200 Theobroma cacao HOM05D005949 ORTHO05D006945 3.5e-133 479.2 437 60.6
CARHR244220 Cardamine hirsuta HOM05D005949 ORTHO05D006945 7.8e-133 478.0 442 64.3
RcHm_v2.0_Chr2g0173461 Rosa chinensis HOM05D005949 ORTHO05D006945 7.8e-133 478.0 455 65.5
Aa31LG6G12800 Aethionema arabicum HOM05D005949 ORTHO05D006945 1.0e-132 477.6 437 65.0
ATR0199G040 Amborella trichopoda HOM05D005949 ORTHO05D006945 1.0e-132 477.6 417 61.4
AT4G35850 Arabidopsis thaliana HOM05D005949 ORTHO05D006945 1.3e-132 477.2 437 63.2
AL7G15220 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 6.6e-132 474.9 437 62.9
Carub.0007s0438 Capsella rubella HOM05D005949 ORTHO05D006945 4.3e-131 472.2 437 62.9
FAN09G2334 Fragaria x ananassa HOM05D005949 ORTHO05D006945 1.6e-130 470.3 452 53.8
BolC1t00304H Brassica oleracea HOM05D005949 ORTHO05D006945 2.4e-129 466.5 438 61.9
Prupe.3G295200 Prunus persica HOM05D005949 ORTHO05D006945 2.4e-129 466.5 439 65.4
PSO063G1157 Papaver somniferum HOM05D005949 ORTHO05D006945 3.1e-129 466.1 438 54.3
C01p03190 Brassica napus HOM05D005949 ORTHO05D006945 5.2e-129 465.3 439 62.2
Ca_04380_v3 Cicer arietinum L. HOM05D005949 ORTHO05D006945 1.2e-128 464.2 421 59.9
Thhalv10025194m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 1.5e-128 463.8 440 62.0
BraA01t00268Z Brassica rapa HOM05D005949 ORTHO05D006945 2.0e-128 463.4 438 61.4
BcaNung04881 Brassica carinata HOM05D005949 ORTHO05D006945 5.8e-128 461.8 439 62.9
arahy.Tifrunner.gnm1.ann1.4A4JE9 Arachis hypogaea HOM05D005949 ORTHO05D006945 7.6e-128 461.5 438 62.6
TPR.G16864 Trifolium pratense HOM05D005949 ORTHO05D006945 7.6e-128 461.5 441 57.6
A01p02870 Brassica napus HOM05D005949 ORTHO05D006945 1.7e-127 460.3 433 61.7
Medtr6g021740 Medicago truncatula HOM05D005949 ORTHO05D006945 2.2e-127 459.9 444 55.9
PSO754G0010 Papaver somniferum HOM05D005949 ORTHO05D006945 6.4e-127 458.4 438 54.1
FAN05G2654 Fragaria x ananassa HOM05D005949 ORTHO05D006945 1.9e-126 456.8 442 63.6
Potri.001G341400 Populus trichocarpa HOM05D005949 ORTHO05D006945 1.2e-125 454.1 443 64.1
AUR62043287 Chenopodium quinoa HOM05D005949 ORTHO05D006945 1.6e-125 453.8 412 55.3
TPR.G8694 Trifolium pratense HOM05D005949 ORTHO05D006945 2.1e-125 453.4 437 57.2
arahy.Tifrunner.gnm1.ann1.BK7H4N Arachis hypogaea HOM05D005949 ORTHO05D006945 1.7e-124 450.3 457 60.2
Atru.chr6.2442 Acer truncatum HOM05D005949 ORTHO05D006945 3.9e-124 449.1 353 66.3
Sabra16G0221400 Salix brachista HOM05D005949 ORTHO05D006945 3.9e-124 449.1 436 64.4
BcaNung00787 Brassica carinata HOM05D005949 ORTHO05D006945 6.6e-124 448.4 438 51.8
FAN14G1023 Fragaria x ananassa HOM05D005949 ORTHO05D006945 8.7e-124 448.0 442 62.9
FvH4_6g51990 Fragaria vesca HOM05D005949 ORTHO05D006945 1.1e-123 447.6 443 62.5
unitig_88.g27782 Utricularia gibba HOM05D005949 ORTHO05D006945 3.3e-123 446.0 287 74.6
Sc09g0007150 Simmondsia chinensis HOM05D005949 ORTHO05D006945 9.6e-123 444.5 369 62.3
FAN02G3213 Fragaria x ananassa HOM05D005949 ORTHO05D006945 2.1e-122 443.4 442 62.7
Ah.02g128260 Amaranthus hybridus HOM05D005949 ORTHO05D006945 1.4e-121 440.7 445 50.3
MELO3C026595.2 Cucumis melo HOM05D005949 ORTHO05D006945 1.3e-119 434.1 373 70.5
DCAR_021740 Daucus carota HOM05D005949 ORTHO05D006945 2.2e-119 433.3 441 53.1
Zm00001eb354320 Zea mays HOM05D005949 ORTHO05D006945 3.8e-119 432.6 436 61.9
Dinv25719 Davidia involucrata HOM05D005949 ORTHO05D006945 6.4e-119 431.8 330 71.5
HPP92_016937 Vanilla planifolia HOM05D005949 ORTHO05D006945 1.9e-118 430.3 445 52.1
Os05g0145600 Oryza sativa ssp. japonica HOM05D005949 ORTHO05D006945 4.2e-118 429.1 423 64.1
CsaV3_3G042930 Cucumis sativus L. HOM05D000631 ORTHO05D000524 1.2e-117 427.6 403 64.8
SEGI_30195 Sequoiadendron giganteum HOM05D005949 ORTHO05D006945 1.1e-113 414.5 409 62.3
AUR62028447 Chenopodium quinoa HOM05D005949 ORTHO05D006945 6.9e-113 411.8 351 57.5
Thhalv10023015m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 4.3e-107 392.5 438 57.3
Actinidia36133 Actinidia chinensis HOM05D005949 ORTHO05D006945 9.6e-107 391.3 309 79.6
vmacro05885 Vaccinium macrocarpon HOM05D005949 ORTHO05D006945 1.6e-101 374.0 342 58.8
Psat5g064960 Pisum sativum HOM05D005949 ORTHO05D006945 1.1e-99 367.9 280 61.1
SHI03792 Sapria himalayana HOM05D005949 ORTHO05D006945 2.5e-99 366.7 252 67.5
CSS0002019 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 2.5e-91 340.1 280 60.7
CDE04G3569 Ceratophyllum demersum HOM05D005949 ORTHO05D006945 8.8e-76 288.5 334 53.3
Duzib147G0933 Durio zibethinus HOM05D005949 ORTHO05D006945 7.0e-73 278.9 326 46.0
Cpa.g.sc130.71 Carica papaya HOM05D005949 ORTHO05D006945 2.3e-68 263.8 270 61.5
CSS0020931 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 1.7e-58 231.1 160 68.8
Pp3c1_21850 Physcomitrium patens HOM05D005949 ORTHO05D006945 6.3e-58 229.2 405 44.4
SMO201G0168 Selaginella moellendorffii HOM05D005949 ORTHO05D006945 1.1e-57 228.4 414 44.7
CBR_g20410 Chara braunii HOM05D005949 ORTHO05D006945 6.8e-52 209.1 415 41.2
Pp3c14_7210 Physcomitrium patens HOM05D005949 ORTHO05D006945 8.8e-52 208.8 432 40.7
CBR_g20407 Chara braunii HOM05D005949 ORTHO05D006945 6.3e-50 202.6 409 39.9
Mapoly0062s0069 Marchantia polymorpha HOM05D005949 ORTHO05D006945 1.1e-49 201.8 394 37.1
AL7G15200 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 1.4e-49 201.4 220 46.8
AagrBONN_evm.TU.Sc2ySwM_117.2156 Anthoceros agrestis HOM05D005949 ORTHO05D006945 1.1e-46 191.8 411 40.4
Psat1g081720 Pisum sativum HOM05D005949 ORTHO05D006945 1.1e-46 191.8 237 46.4
Actinidia36134 Actinidia chinensis HOM05D005949 ORTHO05D006945 9.8e-43 178.7 119 73.1
MBI10_g37260_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 1.1e-41 175.3 210 58.1
Sc07g0004380 Simmondsia chinensis HOM05D005949 ORTHO05D006945 2.4e-41 174.1 148 58.8
MBI10_g15883_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 3.9e-39 166.8 204 47.1
MD09G1021100 Malus domestica HOM05D005949 ORTHO05D006945 3.3e-38 163.7 113 66.4
Zm00001eb120940 Zea mays HOM05D005949 ORTHO05D006945 3.2e-33 147.1 131 55.0
CAN.G479.6 Capsicum annuum HOM05D005949 ORTHO05D006945 7.0e-33 146.0 218 41.3
CAN.G370.99 Capsicum annuum HOM05D000140 ORTHO05D000087 1.2e-32 145.2 109 62.4
Hma1.2p1_0818F.1_g223360 Hydrangea macrophylla HOM05D005949 ORTHO05D006945 3.0e-31 140.6 101 66.3
Psat1g081680 Pisum sativum HOM05D005949 ORTHO05D006945 5.6e-30 136.3 100 62.0
Actinidia05972 Actinidia chinensis HOM05D005088 ORTHO05D006914 9.5e-30 135.6 193 44.0
SHI03793 Sapria himalayana HOM05D005949 ORTHO05D006945 2.8e-29 134.0 80 76.2
CAN.G1258.5 Capsicum annuum HOM05D005949 ORTHO05D006945 3.7e-26 123.6 80 71.2
Sp7g33630 Schrenkiella parvula HOM05D005949 ORTHO05D006945 2.4e-25 120.9 112 56.2
Cpa.g.sc130.69 Carica papaya HOM05D005949 ORTHO05D006945 2.5e-14 84.3 57 68.4
CDE04G3731 Ceratophyllum demersum HOM05D005949 ORTHO05D006945 2.5e-14 84.3 65 60.0
CAN.G15.16 Capsicum annuum HOM05D005949 ORTHO05D006945 4.3e-14 83.6 58 67.2
CAN.G153.13 Capsicum annuum HOM05D001265 ORTHO05D006945 6.2e-13 79.7 52 73.1
MBI07_g20478_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D001968 1.7e-10 71.6 46 69.6
Sc07g0004370 Simmondsia chinensis HOM05D005949 ORTHO05D006945 2.9e-10 70.9 66 56.1
CAN.G1258.4 Capsicum annuum HOM05D005949 ORTHO05D006945 5.1e-07 60.1 38 73.7
CAN.G2149.1 Capsicum annuum HOM05D001265 ORTHO05D006945 1.5e-06 58.5 38 71.1
unitig_88.g27777 Utricularia gibba HOM05D000190 ORTHO05D000113 4.3e-06 57.0 69 46.4
CAN.G898.5 Capsicum annuum HOM05D005949 ORTHO05D006945 9.6e-06 55.8 38 68.4


User provided reference genes

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