Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.K01038 Erythranthe guttata HOM05D006285 ORTHO05D007249 1.9e-101 372.5 184 100.0
MSTRG.467 Avicennia marina HOM05D006285 ORTHO05D007249 6.7e-38 161.4 191 52.9
MSTRG.8043 Avicennia marina HOM05D006285 ORTHO05D007249 1.6e-31 140.2 171 48.5
Actinidia30601 Actinidia chinensis HOM05D006285 ORTHO05D007249 7.7e-26 121.3 170 45.3
Oeu044502.1 Olea europaea HOM05D006285 ORTHO05D007249 1.3e-25 120.6 178 44.9
Ciclev10032858m.g Citrus clementina HOM05D006285 ORTHO05D007249 1.4e-24 117.1 169 43.2
Actinidia09609 Actinidia chinensis HOM05D006285 ORTHO05D007249 2.7e-23 112.8 217 38.7
Sp6g30770 Schrenkiella parvula HOM05D006285 ORTHO05D007249 3.6e-23 112.5 171 44.4
Peaxi162Scf00128g00175 Petunia axillaris HOM05D006285 ORTHO05D007249 4.6e-23 112.1 182 41.8
SalBow2G0692 Salvia bowleyana HOM05D006285 ORTHO05D007249 6.1e-23 111.7 120 53.3
Actinidia34008 Actinidia chinensis HOM05D006285 ORTHO05D007249 1.4e-22 110.5 209 39.2
AL6G23830 Arabidopsis lyrata HOM05D006285 ORTHO05D007249 1.8e-22 110.2 194 40.2
Dinv19860 Davidia involucrata HOM05D006285 ORTHO05D007249 3.0e-22 109.4 178 39.3
PGR057G0008 Punica granatum HOM05D006285 ORTHO05D007249 3.9e-22 109.0 159 45.3
PGR119G0305 Punica granatum HOM05D006285 ORTHO05D007249 3.9e-22 109.0 159 45.3
C02p05990 Brassica napus HOM05D006285 ORTHO05D007249 5.1e-22 108.6 192 41.7
Actinidia22128 Actinidia chinensis HOM05D006285 ORTHO05D007249 8.8e-22 107.8 170 41.8
A03p05870 Brassica napus HOM05D006285 ORTHO05D007249 8.8e-22 107.8 192 40.6
BraA03t09926Z Brassica rapa HOM05D006285 ORTHO05D007249 8.8e-22 107.8 192 40.6
ClCG06G001800 Citrullus lanatus HOM05D006285 ORTHO05D007249 8.8e-22 107.8 160 45.0
BolC9t59226H Brassica oleracea HOM05D006285 ORTHO05D007249 1.1e-21 107.5 175 44.0
C03p06880 Brassica napus HOM05D006285 ORTHO05D007249 1.5e-21 107.1 178 42.1
BolC3t13190H Brassica oleracea HOM05D006285 ORTHO05D007249 1.5e-21 107.1 179 41.9
BcaC04g19135 Brassica carinata HOM05D006285 ORTHO05D007249 3.3e-21 105.9 178 42.7
Rhsim12G0098900 Rhododendron simsii HOM05D006285 ORTHO05D007249 3.3e-21 105.9 178 43.8
C09p63860 Brassica napus HOM05D006285 ORTHO05D007249 4.3e-21 105.5 176 43.2
Oeu019430.1 Olea europaea HOM05D006285 ORTHO05D007249 4.3e-21 105.5 130 45.4
Potri.003G165000 Populus trichocarpa HOM05D006285 ORTHO05D007249 4.3e-21 105.5 168 44.0
A10p24990 Brassica napus HOM05D006285 ORTHO05D007249 5.7e-21 105.1 175 43.4
BraA10t44561Z Brassica rapa HOM05D006285 ORTHO05D007249 5.7e-21 105.1 175 43.4
THA.LOC104825472 Tarenaya hassleriana HOM05D006285 ORTHO05D007249 5.7e-21 105.1 178 41.0
BolC2t06542H Brassica oleracea HOM05D006285 ORTHO05D007249 7.4e-21 104.8 192 41.1
CiPaw.05G103600 Carya illinoinensis HOM05D006285 ORTHO05D007249 7.4e-21 104.8 157 45.9
CiPaw.06G107800 Carya illinoinensis HOM05D006285 ORTHO05D007249 1.7e-20 103.6 156 46.2
Gorai.005G196200 Gossypium raimondii HOM05D006285 ORTHO05D007249 2.2e-20 103.2 192 40.6
Carub.0006s1139 Capsella rubella HOM05D006285 ORTHO05D007249 2.8e-20 102.8 201 37.3
Gohir.D01G019500 Gossypium hirsutum HOM05D006285 ORTHO05D007249 2.8e-20 102.8 167 44.3
Gorai.002G021800 Gossypium raimondii HOM05D006285 ORTHO05D007249 2.8e-20 102.8 167 44.3
Thecc.02G195800 Theobroma cacao HOM05D006285 ORTHO05D007249 3.7e-20 102.4 167 42.5
Aa31LG3G14440 Aethionema arabicum HOM05D006285 ORTHO05D007249 6.3e-20 101.7 171 41.5
Gohir.D02G174500 Gossypium hirsutum HOM05D006285 ORTHO05D007249 6.3e-20 101.7 173 42.8
CsaV3_4G002460 Cucumis sativus L. HOM05D006285 ORTHO05D007249 8.2e-20 101.3 199 37.2
Gohir.A03G151500 Gossypium hirsutum HOM05D006285 ORTHO05D007249 1.8e-19 100.1 192 39.6
QL03p050117 Quercus lobata HOM05D006285 ORTHO05D007249 1.8e-19 100.1 194 42.3
HanXRQChr08g0210081 Helianthus annuus HOM05D006285 ORTHO05D007249 2.4e-19 99.8 155 41.3
GSVIVG01000967001 Vitis vinifera HOM05D006285 ORTHO05D007249 3.1e-19 99.4 186 38.7
Potri.001G062500 Populus trichocarpa HOM05D006285 ORTHO05D007249 4.1e-19 99.0 185 42.7
ECA233G3183 Erigeron canadensis HOM05D006285 ORTHO05D007249 5.3e-19 98.6 150 40.7
BcaNung01167 Brassica carinata HOM05D006285 ORTHO05D007249 9.1e-19 97.8 175 40.0
MELO3C017797.2 Cucumis melo HOM05D006285 ORTHO05D007249 1.2e-18 97.4 201 35.8
Cfa009427 Carpinus fangiana HOM05D006285 ORTHO05D007249 1.5e-18 97.1 184 41.3
Manes.09G186200 Manihot esculenta HOM05D006285 ORTHO05D007249 1.5e-18 97.1 184 39.7
CSS0034430 Camellia sinensis var. sinensis HOM05D006285 ORTHO05D007249 2.0e-18 96.7 211 34.6
Sabra01G0044900 Salix brachista HOM05D006285 ORTHO05D007249 2.0e-18 96.7 181 39.8
Aqoxy5G03206 Aquilegia oxysepala HOM05D006285 ORTHO05D007249 2.6e-18 96.3 150 43.3
BcaNung01870 Brassica carinata HOM05D006285 ORTHO05D007249 2.6e-18 96.3 180 40.6
BcaNung01871 Brassica carinata HOM05D006285 ORTHO05D007249 2.6e-18 96.3 180 40.6
BraA02t05154Z Brassica rapa HOM05D006285 ORTHO05D007249 3.4e-18 95.9 180 41.1
Sabra03G0120200 Salix brachista HOM05D006285 ORTHO05D007249 3.4e-18 95.9 200 39.0
TWI18G1468 Tripterygium wilfordii HOM05D006285 ORTHO05D007249 3.4e-18 95.9 188 36.2
Atru.chr11.2411 Acer truncatum HOM05D006285 ORTHO05D007249 4.5e-18 95.5 137 46.0
CANSAT01G0254 Cannabis sativa HOM05D006285 ORTHO05D007249 4.5e-18 95.5 166 44.0
Haze_12478 Corylus avellana HOM05D006285 ORTHO05D007249 4.5e-18 95.5 178 42.1
CsaV3_6G007840 Cucumis sativus L. HOM05D006285 ORTHO05D007249 4.5e-18 95.5 161 41.6
A02p01780 Brassica napus HOM05D006285 ORTHO05D007249 7.7e-18 94.7 166 43.4
THA.LOC104803190 Tarenaya hassleriana HOM05D006285 ORTHO05D007249 1.0e-17 94.4 170 40.6
AT5G13220 Arabidopsis thaliana HOM05D006285 ORTHO05D007249 1.7e-17 93.6 181 38.1
Duzib052G0121 Durio zibethinus HOM05D006285 ORTHO05D007249 2.9e-17 92.8 166 40.4
HanXRQChr06g0175041 Helianthus annuus HOM05D006285 ORTHO05D007249 5.0e-17 92.0 141 41.1
Duzib248G1203 Durio zibethinus HOM05D006285 ORTHO05D007249 8.5e-17 91.3 161 40.4
Prupe.1G218500 Prunus persica HOM05D006285 ORTHO05D007249 8.5e-17 91.3 199 35.2
PGSC0003DMG400006480 Solanum tuberosum HOM05D006285 ORTHO05D007249 1.1e-16 90.9 157 40.1
PGR102G0288 Punica granatum HOM05D006285 ORTHO05D007249 1.4e-16 90.5 160 38.8
MELO3C022348.2 Cucumis melo HOM05D006285 ORTHO05D007249 3.2e-16 89.4 152 43.4
Thhalv10014724m.g Eutrema salsugineum HOM05D006285 ORTHO05D007249 3.2e-16 89.4 181 37.6
Rhsim12G0019500 Rhododendron simsii HOM05D006285 ORTHO05D007249 7.2e-16 88.2 160 39.4
Sed0027998 Sechium edule HOM05D006285 ORTHO05D007249 9.4e-16 87.8 154 42.9
ATR0582G164 Amborella trichopoda HOM05D006285 ORTHO05D007249 1.2e-15 87.4 212 34.4
CDE06G1494 Ceratophyllum demersum HOM05D006285 ORTHO05D007249 1.6e-15 87.0 168 35.7
MD13G1127100 Malus domestica HOM05D006285 ORTHO05D007249 2.1e-15 86.7 196 37.8
Sc04g0010480 Simmondsia chinensis HOM05D006285 ORTHO05D007249 2.1e-15 86.7 164 37.8
EL10Ac6g13588 Beta vulgaris HOM05D006285 ORTHO05D007249 2.7e-15 86.3 191 38.2
MD16G1127400 Malus domestica HOM05D006285 ORTHO05D007249 4.7e-15 85.5 173 39.3
PSO478G0022 Papaver somniferum HOM05D006285 ORTHO05D007249 4.7e-15 85.5 190 34.2
Eucgr.G01954 Eucalyptus grandis HOM05D006285 ORTHO05D007249 7.9e-15 84.7 173 37.0
PSO017G1512 Papaver somniferum HOM05D006285 ORTHO05D007249 1.0e-14 84.3 189 34.4
CAN.G1179.3 Capsicum annuum HOM05D006285 ORTHO05D000105 1.4e-14 84.0 109 44.0
TAR622G0521 Trochodendron aralioides HOM05D006285 ORTHO05D007249 1.4e-14 84.0 174 33.9
COL.COLO4_20246 Corchorus olitorius HOM05D006285 ORTHO05D007249 3.0e-14 82.8 160 38.8
HanXRQChr17g0540471 Helianthus annuus HOM05D006285 ORTHO05D007249 3.0e-14 82.8 145 35.9
TAR374G0139 Trochodendron aralioides HOM05D006285 ORTHO05D007249 6.7e-14 81.6 196 33.2
Lsat_1_v5_gn_3_31461 Lactuca sativa HOM05D006285 ORTHO05D007249 1.5e-13 80.5 147 40.1
PSO732G0051 Papaver somniferum HOM05D006285 ORTHO05D007249 2.0e-13 80.1 186 34.9
Sc11g0000190 Simmondsia chinensis HOM05D006285 ORTHO05D007249 4.4e-13 79.0 145 37.2
PSO675G2785 Papaver somniferum HOM05D006285 ORTHO05D007249 9.7e-13 77.8 190 34.2
FvH4_4g23000 Fragaria vesca HOM05D006285 ORTHO05D007249 3.7e-12 75.9 170 35.9
BcaB01g05368 Brassica carinata HOM05D006285 ORTHO05D007249 4.8e-12 75.5 95 48.4
CARHR200230 Cardamine hirsuta HOM05D006285 ORTHO05D007249 4.8e-12 75.5 109 43.1
RcHm_v2.0_Chr4g0429271 Rosa chinensis HOM05D006285 ORTHO05D007249 4.8e-12 75.5 169 35.5
Sopen01g005240 Solanum pennellii HOM05D015436 ORTHO05D018126 6.3e-12 75.1 99 46.5
SEGI_20867 Sequoiadendron giganteum HOM05D006285 ORTHO05D007249 8.2e-12 74.7 95 48.4
Manes.08G102800 Manihot esculenta HOM05D006285 ORTHO05D007249 4.1e-11 72.4 169 36.1
ECA246G0706 Erigeron canadensis HOM05D006285 ORTHO05D007249 9.1e-11 71.2 185 29.2
Oeu055473.1 Olea europaea HOM05D006285 ORTHO05D007249 2.0e-10 70.1 161 34.8
HPP92_023090 Vanilla planifolia HOM05D006285 ORTHO05D007249 2.6e-10 69.7 147 32.0
Gohir.A01G021000 Gossypium hirsutum HOM05D006285 ORTHO05D007249 3.5e-10 69.3 102 47.1
Eucgr.B03545 Eucalyptus grandis HOM05D006285 ORTHO05D007249 7.7e-10 68.2 200 32.5
MBI07_g36277_MAGBIO Magnolia biondii HOM05D006285 ORTHO05D007249 1.3e-09 67.4 164 33.5
SEGI_23736 Sequoiadendron giganteum HOM05D006285 ORTHO05D007249 1.3e-09 67.4 106 39.6
FAN07G2449 Fragaria x ananassa HOM05D006285 ORTHO05D007249 2.9e-09 66.2 157 34.4
FAN12G2625 Fragaria x ananassa HOM05D006285 ORTHO05D007249 3.8e-09 65.9 157 35.0
CDE06G1940 Ceratophyllum demersum HOM05D001047 ORTHO05D000768 5.0e-09 65.5 119 35.3
FAN17G1869 Fragaria x ananassa HOM05D006285 ORTHO05D007249 8.5e-09 64.7 157 33.8
Sopen01g005260 Solanum pennellii HOM05D015436 ORTHO05D018126 1.9e-08 63.5 82 43.9
TWI36G1029 Tripterygium wilfordii HOM05D006285 ORTHO05D007249 2.5e-08 63.2 162 35.2
Cpa.g.sc207.10 Carica papaya HOM05D006285 ORTHO05D007249 3.2e-08 62.8 160 32.5
CDE04G3301 Ceratophyllum demersum HOM05D001047 ORTHO05D000768 5.5e-08 62.0 108 37.0
Nn3g16318 Nelumbo nucifera HOM05D006285 ORTHO05D007249 7.2e-08 61.6 108 36.1
HanXRQChr04g0125901 Helianthus annuus HOM05D001047 ORTHO05D000768 9.4e-08 61.2 117 34.2
Ah.03g135710 Amaranthus hybridus HOM05D000002 ORTHO05D000047 2.7e-07 59.7 124 35.5
ClCG07G011740 Citrullus lanatus HOM05D006285 ORTHO05D007249 3.6e-07 59.3 86 44.2
FvH4_6g35140 Fragaria vesca HOM05D001047 ORTHO05D000768 3.6e-07 59.3 93 39.8
FAN02G1879 Fragaria x ananassa HOM05D001047 ORTHO05D000768 3.6e-07 59.3 101 37.6
Os04g0395800 Oryza sativa ssp. japonica HOM05D006285 ORTHO05D007249 3.6e-07 59.3 79 41.8
ECA236G0223 Erigeron canadensis HOM05D001047 ORTHO05D000768 6.1e-07 58.5 78 42.3
GSVIVG01023256001 Vitis vinifera HOM05D001047 ORTHO05D000768 8.0e-07 58.2 113 35.4
vmacro16080 Vaccinium macrocarpon HOM05D006285 ORTHO05D007249 1.0e-06 57.8 169 28.4
CDE02G4729 Ceratophyllum demersum HOM05D006285 ORTHO05D007249 1.4e-06 57.4 112 37.5
RcHm_v2.0_Chr2g0146371 Rosa chinensis HOM05D001047 ORTHO05D000768 1.8e-06 57.0 85 40.0
SEGI_26161 Sequoiadendron giganteum HOM05D012961 ORTHO05D000768 1.8e-06 57.0 129 32.6
Sopen01g045960 Solanum pennellii HOM05D001047 ORTHO05D000768 1.8e-06 57.0 105 36.2
PGSC0003DMG400015667 Solanum tuberosum HOM05D021175 ORTHO05D017781 1.8e-06 57.0 147 32.7
Lj4g0027094 Lotus japonicus HOM05D001047 ORTHO05D000768 2.3e-06 56.6 91 34.1
Lalb_Chr13g0299341 Lupinus albus HOM05D001047 ORTHO05D000768 2.3e-06 56.6 94 38.3
PGR142G0155 Punica granatum HOM05D001047 ORTHO05D000768 2.3e-06 56.6 123 34.1
Hund05721 Selenicereus undatus HOM05D001047 ORTHO05D000768 2.3e-06 56.6 163 31.3
Zm00001eb005990 Zea mays HOM05D001047 ORTHO05D000768 2.3e-06 56.6 80 41.2
EL10Ac7g16441 Beta vulgaris HOM05D001047 ORTHO05D000768 3.0e-06 56.2 111 36.0
FAN08G1269 Fragaria x ananassa HOM05D001047 ORTHO05D000768 4.0e-06 55.8 107 32.7
Sc18g0002760 Simmondsia chinensis HOM05D001047 ORTHO05D000768 4.0e-06 55.8 127 34.6
Ah.08g217050 Amaranthus hybridus HOM05D001047 ORTHO05D000768 5.2e-06 55.5 118 31.4
MELO3C022678.2 Cucumis melo HOM05D001047 ORTHO05D000768 5.2e-06 55.5 88 39.8
CsaV3_3G030830 Cucumis sativus L. HOM05D001047 ORTHO05D000768 5.2e-06 55.5 88 39.8
FAN04G1998 Fragaria x ananassa HOM05D001047 ORTHO05D000768 5.2e-06 55.5 98 34.7
FAN09G2579 Fragaria x ananassa HOM05D001047 ORTHO05D000768 5.2e-06 55.5 88 38.6
FAN14G3719 Fragaria x ananassa HOM05D001047 ORTHO05D000768 5.2e-06 55.5 88 38.6
Medtr4g124960 Medicago truncatula HOM05D001047 ORTHO05D000768 5.2e-06 55.5 81 39.5
Medtr5g013530 Medicago truncatula HOM05D001047 ORTHO05D000768 5.2e-06 55.5 98 36.7
SEGI_13039 Sequoiadendron giganteum HOM05D012961 ORTHO05D007249 5.2e-06 55.5 133 31.6
VMungo1215G0026 Vigna mungo HOM05D001047 ORTHO05D000768 5.2e-06 55.5 223 25.1
VMungo1309G1373 Vigna mungo HOM05D001047 ORTHO05D000768 5.2e-06 55.5 111 35.1
FvH4_5g11290 Fragaria vesca HOM05D001047 ORTHO05D000768 6.7e-06 55.1 107 32.7
FAN18G2883 Fragaria x ananassa HOM05D001047 ORTHO05D000768 6.7e-06 55.1 107 32.7
HanXRQChr09g0277101 Helianthus annuus HOM05D001047 ORTHO05D000768 6.7e-06 55.1 115 33.0
HanXRQChr11g0351101 Helianthus annuus HOM05D001047 ORTHO05D000768 6.7e-06 55.1 148 29.1
Lsat_1_v5_gn_8_85820 Lactuca sativa HOM05D001047 ORTHO05D000768 8.8e-06 54.7 88 36.4
Phvul.009G221800 Phaseolus vulgaris HOM05D001047 ORTHO05D000768 8.8e-06 54.7 111 35.1
Solyc01g009740.3 Solanum lycopersicum HOM05D015436 ORTHO05D018126 8.8e-06 54.7 106 37.7
Sopen11g005800 Solanum pennellii HOM05D021175 ORTHO05D017781 8.8e-06 54.7 147 32.7
Zm00001eb006000 Zea mays HOM05D001047 ORTHO05D000768 8.8e-06 54.7 95 36.8


User provided reference genes

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