Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 2.8e-285 984.6 490 100.0
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 9.8e-246 853.2 494 85.0
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 6.0e-243 844.0 493 84.2
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 6.6e-242 840.5 495 85.3
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 8.6e-242 840.1 497 84.1
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 5.6e-241 837.4 493 83.8
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 9.5e-241 836.6 495 83.8
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 3.1e-239 831.6 495 83.0
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 5.2e-239 830.9 493 82.4
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 2.6e-238 828.6 493 82.8
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 3.4e-238 828.2 491 83.7
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 5.8e-238 827.4 485 83.7
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 1.7e-237 825.9 488 82.4
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 3.7e-237 824.7 492 81.7
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 4.9e-237 824.3 491 83.1
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 6.4e-237 823.9 492 82.1
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 8.3e-237 823.5 488 82.2
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 1.4e-236 822.8 492 82.3
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 2.4e-236 822.0 488 82.6
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 4.1e-236 821.2 492 81.9
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 5.4e-236 820.8 492 81.7
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 1.6e-235 819.3 492 81.9
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 1.6e-235 819.3 494 81.8
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 2.1e-235 818.9 488 82.0
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 3.5e-235 818.1 488 81.6
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 3.5e-235 818.1 493 82.4
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 4.6e-235 817.8 492 81.9
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 6.0e-235 817.4 494 82.2
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 6.0e-235 817.4 503 80.3
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 7.8e-235 817.0 494 81.8
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 1.3e-234 816.2 492 81.3
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 1.3e-234 816.2 493 80.9
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 1.7e-234 815.8 493 80.7
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 3.0e-234 815.1 488 81.6
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 5.1e-234 814.3 493 81.7
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 8.6e-234 813.5 488 81.6
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 8.6e-234 813.5 493 80.3
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 1.1e-233 813.1 531 77.2
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 3.3e-233 811.6 493 80.3
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 7.3e-233 810.4 491 80.9
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 7.3e-233 810.4 492 81.7
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.6e-232 809.3 488 81.1
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 2.8e-232 808.5 492 80.7
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 6.2e-232 807.4 492 81.1
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 6.2e-232 807.4 487 81.9
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 1.1e-231 806.6 493 80.5
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 1.1e-231 806.6 493 79.9
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 1.1e-231 806.6 487 80.9
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 3.1e-231 805.1 493 79.9
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 3.4e-230 801.6 493 81.1
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 9.9e-230 800.0 485 81.2
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 1.3e-229 799.7 491 80.0
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 1.7e-229 799.3 490 80.8
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 1.7e-229 799.3 507 78.5
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 2.9e-229 798.5 486 79.8
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 2.9e-229 798.5 489 80.0
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 2.9e-229 798.5 493 79.7
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 3.7e-229 798.1 493 78.3
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 3.7e-229 798.1 489 79.6
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 4.9e-229 797.7 490 80.6
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 4.9e-229 797.7 491 81.3
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 4.9e-229 797.7 492 79.7
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 8.3e-229 797.0 489 80.4
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 1.4e-228 796.2 490 80.2
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 1.9e-228 795.8 489 80.0
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 1.9e-228 795.8 491 79.8
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 1.9e-228 795.8 485 81.6
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 2.4e-228 795.4 492 79.7
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 2.4e-228 795.4 489 80.8
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 4.1e-228 794.7 489 80.8
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 5.4e-228 794.3 492 79.9
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 5.4e-228 794.3 487 79.5
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 9.2e-228 793.5 489 80.8
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 9.2e-228 793.5 485 81.2
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 1.2e-227 793.1 489 80.2
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.2e-227 793.1 492 79.3
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 1.6e-227 792.7 493 78.9
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 1.6e-227 792.7 487 79.7
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 1.6e-227 792.7 492 79.7
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 1.6e-227 792.7 527 75.3
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 2.1e-227 792.3 490 80.0
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 3.5e-227 791.6 479 80.8
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 6.0e-227 790.8 492 78.9
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 6.0e-227 790.8 494 78.5
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 1.3e-226 789.6 485 79.4
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 2.3e-226 788.9 490 79.8
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.3e-226 788.9 492 78.5
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 1.1e-225 786.6 489 79.6
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 1.5e-225 786.2 489 79.1
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 1.9e-225 785.8 497 78.9
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.5e-225 785.4 490 79.2
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 2.5e-225 785.4 488 79.3
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 3.3e-225 785.0 489 78.9
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 9.5e-225 783.5 485 80.4
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.6e-224 782.7 492 78.5
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 8.1e-224 780.4 492 78.7
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 2.4e-223 778.9 493 78.5
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 3.1e-223 778.5 484 79.5
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 3.1e-223 778.5 492 78.7
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 6.8e-223 777.3 494 77.7
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 9.0e-215 750.4 450 80.7
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 3.8e-213 745.0 511 73.6
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 6.4e-213 744.2 440 82.0
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 3.5e-211 738.4 484 74.6
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 6.0e-211 737.6 481 75.1
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 3.1e-207 725.3 435 82.1
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 2.2e-205 719.2 438 80.1
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 3.2e-204 715.3 440 79.8
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 7.1e-204 714.1 494 72.9
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 5.1e-202 708.0 438 80.4
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 3.3e-201 705.3 491 71.5
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 5.3e-199 698.0 439 78.6
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 2.2e-197 692.6 484 72.3
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 8.2e-192 674.1 488 67.6
unitig_748.g7015 Utricularia gibba HOM05D002267 ORTHO05D005902 2.6e-190 669.1 403 82.9
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 5.8e-190 667.9 382 86.1
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.6e-182 642.5 487 69.0
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.0e-178 630.6 481 68.0
CSS0025473 Camellia sinensis var. sinensis HOM05D002267 ORTHO05D005902 1.5e-177 626.7 380 81.8
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 5.7e-177 624.8 492 66.5
CBR_g48938 Chara braunii HOM05D002267 ORTHO05D005902 3.6e-171 605.5 509 61.1
FAN05G0821 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.6e-166 589.3 382 76.7
Psat0s4662g0040 Pisum sativum HOM05D002267 ORTHO05D005902 4.5e-166 588.6 490 64.3
RcHm_v2.0_Chr5g0053071 Rosa chinensis HOM05D002267 ORTHO05D005902 9.1e-159 564.3 387 74.4
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 2.0e-153 546.6 461 65.3
Prupe.3G243300 Prunus persica HOM05D002267 ORTHO05D005902 1.2e-150 537.3 345 76.5
Sabra17G0091700 Salix brachista HOM05D002267 ORTHO05D008106 3.8e-149 532.3 382 70.7
Cre12.g527400 Chlamydomonas reinhardtii HOM05D002267 ORTHO05D005902 5.5e-148 528.5 531 51.2
FAN18G0049 Fragaria x ananassa HOM05D002267 ORTHO05D005902 6.4e-128 461.8 268 84.7
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 1.2e-123 447.6 472 51.9
HanXRQChr03g0070911 Helianthus annuus HOM05D002267 ORTHO05D005902 4.3e-116 422.5 245 83.3
Zm00001eb410550 Zea mays HOM05D002267 ORTHO05D005902 8.4e-112 408.3 238 81.9
HanXRQChr03g0070931 Helianthus annuus HOM05D002267 ORTHO05D005902 7.8e-110 401.7 301 67.8
AagrBONN_evm.TU.Sc2ySwM_228.1779 Anthoceros agrestis HOM05D002267 ORTHO05D005902 2.4e-103 380.2 238 76.5
BcaC03g17613 Brassica carinata HOM05D002267 ORTHO05D005902 3.5e-102 376.3 250 73.6
FAN13G3322 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.9e-101 372.9 228 81.1
AagrBONN_evm.TU.Sc2ySwM_362.1960 Anthoceros agrestis HOM05D002267 ORTHO05D005902 1.1e-100 371.3 431 49.9
MBI14_g42567_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.4e-98 363.6 478 46.7
HPP92_013297 Vanilla planifolia HOM05D002267 ORTHO05D005902 1.3e-93 347.8 236 73.7
MD09G1080600 Malus domestica HOM05D002267 ORTHO05D005902 5.6e-92 342.4 303 64.0
FAN02G0256 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.2e-87 326.6 309 57.9
SHI33593 Sapria himalayana HOM05D002267 ORTHO05D005902 3.5e-86 323.2 234 68.4
Duzib177G0042 Durio zibethinus HOM05D002267 ORTHO05D005902 2.1e-78 297.4 249 63.9
TPR.G11470 Trifolium pratense HOM05D002267 ORTHO05D005902 2.7e-54 217.2 157 68.2
Oeu025125.1 Olea europaea HOM05D002267 ORTHO05D005902 3.0e-53 213.8 147 70.7
TAR374G1196 Trochodendron aralioides HOM05D002267 ORTHO05D005902 8.8e-53 212.2 261 49.0
BcaC06g30839 Brassica carinata HOM05D002267 ORTHO05D005902 1.4e-50 204.9 299 45.2
CARHR060050 Cardamine hirsuta HOM05D002267 ORTHO05D005902 1.5e-44 184.9 143 62.2
HanXRQChr17g0560661 Helianthus annuus HOM05D002267 ORTHO05D027489 2.0e-44 184.5 103 85.4
BcaB07g30056 Brassica carinata HOM05D002267 ORTHO05D027489 1.3e-43 181.8 98 86.7
MBI14_g30826_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D027489 1.0e-40 172.2 100 84.0
HPP92_013296 Vanilla planifolia HOM05D002267 ORTHO05D005902 1.7e-40 171.4 151 62.9
MD09G1080700 Malus domestica HOM05D002267 ORTHO05D005902 2.1e-38 164.5 107 70.1
Sed0003994 Sechium edule HOM05D002267 ORTHO05D007330 3.0e-37 160.6 143 58.0
GSVIVG01036480001 Vitis vinifera HOM05D002267 ORTHO05D005902 2.9e-32 144.1 75 89.3
MBI14_g13653_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D035901 8.8e-29 132.5 158 48.7
Glyma.20G047400 Glycine max HOM05D002267 ORTHO05D029252 1.1e-26 125.6 85 71.8
Duzib168G0178 Durio zibethinus HOM05D002267 ORTHO05D029252 1.2e-25 122.1 79 69.6
Glyma.04G110800 Glycine max HOM05D002267 ORTHO05D029252 5.4e-18 96.7 93 55.9
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 1.4e-13 82.0 60 73.3
FAN18G1196 Fragaria x ananassa HOM05D002267 ORTHO05D035901 9.8e-12 75.9 69 56.5
Glyma.U031218 Glycine max HOM05D002267 ORTHO05D029252 7.0e-10 69.7 35 85.7
BcaB04g17555 Brassica carinata HOM05D002267 ORTHO05D092878 1.2e-09 68.9 51 66.7
Nn5g27547 Nelumbo nucifera HOM05D002267 ORTHO05D027489 3.9e-08 63.9 30 90.0
RcHm_v2.0_Chr5g0053081 Rosa chinensis HOM05D002267 ORTHO05D035901 8.6e-08 62.8 42 66.7
MELO3C034926.2 Cucumis melo HOM05D002267 ORTHO05D001928 7.3e-07 59.7 38 76.3


User provided reference genes

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