Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.K00169 Erythranthe guttata HOM05D006173 ORTHO05D007685 3.3e-245 851.3 434 100.0
MSTRG.10773 Avicennia marina HOM05D006173 ORTHO05D007685 5.3e-219 764.2 438 88.1
Oeu060754.2 Olea europaea HOM05D006173 ORTHO05D007685 1.2e-191 673.3 473 71.0
Dinv10196 Davidia involucrata HOM05D006173 ORTHO05D007685 4.4e-189 664.8 442 75.1
PGSC0003DMG400017881 Solanum tuberosum HOM05D006173 ORTHO05D007685 1.0e-185 653.7 435 74.7
Sopen08g011280 Solanum pennellii HOM05D006173 ORTHO05D007685 7.2e-184 647.5 435 74.0
Cfa019941 Carpinus fangiana HOM05D006173 ORTHO05D007685 4.7e-183 644.8 446 70.9
Solyc08g016801.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 1.4e-182 643.3 435 73.3
Manes.10G077600 Manihot esculenta HOM05D006173 ORTHO05D007685 4.0e-182 641.7 444 72.3
Prupe.7G021600 Prunus persica HOM05D006173 ORTHO05D007685 4.0e-182 641.7 442 72.9
Hma1.2p1_0044F.1_g026020 Hydrangea macrophylla HOM05D006173 ORTHO05D007685 8.9e-182 640.6 457 67.8
Actinidia17973 Actinidia chinensis HOM05D006173 ORTHO05D007685 1.2e-181 640.2 442 69.5
Atru.chr1.1516 Acer truncatum HOM05D006173 ORTHO05D007685 2.0e-181 639.4 444 72.7
Cc06_g22820 Coffea canephora HOM05D006173 ORTHO05D007685 3.7e-180 635.2 459 69.3
Ciclev10011725m.g Citrus clementina HOM05D006173 ORTHO05D007685 4.9e-180 634.8 440 68.9
TWI74G0774 Tripterygium wilfordii HOM05D006173 ORTHO05D007685 1.4e-179 633.3 447 71.6
Thecc.05G131000 Theobroma cacao HOM05D006173 ORTHO05D007685 5.4e-179 631.3 438 70.1
Gorai.007G351000 Gossypium raimondii HOM05D006173 ORTHO05D007685 1.0e-177 627.1 438 69.9
Gohir.D11G320800 Gossypium hirsutum HOM05D006173 ORTHO05D007685 1.7e-177 626.3 438 69.9
CiPaw.10G124100 Carya illinoinensis HOM05D006173 ORTHO05D007685 2.9e-177 625.5 446 71.1
Gohir.A11G305400 Gossypium hirsutum HOM05D006173 ORTHO05D007685 1.5e-176 623.2 438 69.4
PSO541G4485 Papaver somniferum HOM05D006173 ORTHO05D007685 5.6e-176 621.3 440 69.5
PGR142G0634 Punica granatum HOM05D006173 ORTHO05D007685 2.8e-175 619.0 448 69.0
Potri.016G030400 Populus trichocarpa HOM05D006173 ORTHO05D007685 8.0e-175 617.5 444 67.6
PSO675G1003 Papaver somniferum HOM05D006173 ORTHO05D007685 2.3e-174 615.9 440 69.8
SalBow1G0987 Salvia bowleyana HOM05D006173 ORTHO05D007685 4.0e-174 615.1 466 68.7
Cpa.g.sc33.197 Carica papaya HOM05D006173 ORTHO05D007685 8.9e-174 614.0 443 67.3
Duzib106G1718 Durio zibethinus HOM05D006173 ORTHO05D007685 8.9e-174 614.0 438 68.9
MELO3C009724.2 Cucumis melo HOM05D006173 ORTHO05D007685 5.8e-173 611.3 446 70.4
FvH4_7g04320 Fragaria vesca HOM05D006173 ORTHO05D007685 1.7e-172 609.8 436 71.3
EL10Ac3g07343 Beta vulgaris HOM05D006173 ORTHO05D007685 1.6e-170 603.2 436 66.5
Peaxi162Scf00937g00117 Petunia axillaris HOM05D006173 ORTHO05D007685 4.6e-170 601.7 419 69.9
Sed0007984 Sechium edule HOM05D006173 ORTHO05D007685 7.8e-170 600.9 446 70.0
THA.LOC104814894 Tarenaya hassleriana HOM05D006173 ORTHO05D007685 1.3e-169 600.1 436 69.3
Lj1g0020171 Lotus japonicus HOM05D006173 ORTHO05D007685 1.9e-168 596.3 447 64.7
Eucgr.K01689 Eucalyptus grandis HOM05D006173 ORTHO05D007685 1.2e-167 593.6 451 66.5
Glyma.19G125000 Glycine max HOM05D006173 ORTHO05D007685 1.2e-167 593.6 446 67.0
AL5G38300 Arabidopsis lyrata HOM05D006173 ORTHO05D007685 2.1e-167 592.8 442 69.7
AT3G56900 Arabidopsis thaliana HOM05D006173 ORTHO05D007685 2.8e-167 592.4 443 69.5
Carub.0005s2364 Capsella rubella HOM05D006173 ORTHO05D007685 4.7e-167 591.7 442 69.2
CARHR167050 Cardamine hirsuta HOM05D006173 ORTHO05D007685 3.1e-166 589.0 445 69.0
Glyma.03G120400 Glycine max HOM05D006173 ORTHO05D007685 3.1e-166 589.0 444 65.5
Haze_20298 Corylus avellana HOM05D006173 ORTHO05D007685 8.9e-166 587.4 464 62.7
CsaV3_3G039830 Cucumis sativus L. HOM05D006173 ORTHO05D007685 1.3e-164 583.6 446 65.5
Sp5g05690 Schrenkiella parvula HOM05D006173 ORTHO05D007685 2.2e-164 582.8 444 68.7
CSS0033436 Camellia sinensis var. sinensis HOM05D006173 ORTHO05D007685 8.3e-164 580.9 427 68.9
Medtr7g088540 Medicago truncatula HOM05D006173 ORTHO05D007685 9.2e-163 577.4 452 62.6
ECA247G0085 Erigeron canadensis HOM05D006173 ORTHO05D007685 1.2e-162 577.0 435 65.5
ClCG10G016510 Citrullus lanatus HOM05D006173 ORTHO05D007685 3.5e-162 575.5 486 61.3
Sabra16G0033900 Salix brachista HOM05D006173 ORTHO05D007685 7.8e-162 574.3 494 59.3
SGA_v2.0_scaffold106G30556 Striga asiatica HOM05D006173 ORTHO05D007685 1.0e-161 573.9 455 66.8
BcaC07g40109 Brassica carinata HOM05D006173 ORTHO05D007685 6.6e-161 571.2 446 63.5
Thhalv10005968m.g Eutrema salsugineum HOM05D006173 ORTHO05D007685 1.5e-160 570.1 444 64.2
arahy.Tifrunner.gnm1.ann1.NS6SL1 Arachis hypogaea HOM05D006173 ORTHO05D007685 1.2e-159 567.0 458 61.1
BolC8t50833H Brassica oleracea HOM05D006173 ORTHO05D007685 1.6e-159 566.6 451 62.3
C08p32150 Brassica napus HOM05D006173 ORTHO05D007685 2.1e-159 566.2 451 62.5
Phvul.001G116600 Phaseolus vulgaris HOM05D006173 ORTHO05D007685 2.1e-159 566.2 444 63.1
A09p49770 Brassica napus HOM05D006173 ORTHO05D007685 4.7e-159 565.1 449 62.1
BraA09t40430Z Brassica rapa HOM05D006173 ORTHO05D007685 4.7e-159 565.1 449 62.1
FAN10G0117 Fragaria x ananassa HOM05D006173 ORTHO05D007685 4.7e-159 565.1 447 64.0
Zm00001eb405260 Zea mays HOM05D006173 ORTHO05D007685 6.8e-158 561.2 443 60.9
BcaC07g40002 Brassica carinata HOM05D006173 ORTHO05D007685 1.2e-157 560.5 445 62.7
VMungo0331G1996 Vigna mungo HOM05D006173 ORTHO05D007685 2.2e-156 556.2 444 61.5
Os12g0129400 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 2.1e-154 549.7 443 60.0
Lsat_1_v5_gn_9_32341 Lactuca sativa HOM05D006173 ORTHO05D007685 1.1e-152 543.9 435 61.8
Os11g0132700 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 1.5e-152 543.5 443 58.9
FAN01G1644 Fragaria x ananassa HOM05D006173 ORTHO05D007685 1.8e-150 536.6 540 54.1
arahy.Tifrunner.gnm1.ann1.TSE1DU Arachis hypogaea HOM05D006173 ORTHO05D007685 2.4e-150 536.2 458 59.2
Aa31LG10G11760 Aethionema arabicum HOM05D006173 ORTHO05D007685 1.7e-148 530.0 521 53.7
HanXRQChr14g0457301 Helianthus annuus HOM05D006173 ORTHO05D007685 4.9e-148 528.5 434 61.1
TPR.G27968 Trifolium pratense HOM05D006173 ORTHO05D007685 4.9e-148 528.5 410 64.4
AUR62020996 Chenopodium quinoa HOM05D006173 ORTHO05D007685 4.2e-147 525.4 427 60.9
MD12G1112000 Malus domestica HOM05D006173 ORTHO05D007685 5.4e-147 525.0 525 54.5
SEGI_22413 Sequoiadendron giganteum HOM05D006173 ORTHO05D007685 1.5e-144 516.9 461 56.2
FAN06G1001 Fragaria x ananassa HOM05D006173 ORTHO05D007685 2.6e-141 506.1 457 58.6
TAR623G0939 Trochodendron aralioides HOM05D006173 ORTHO05D007685 4.9e-140 501.9 399 65.2
Hund19061 Selenicereus undatus HOM05D006173 ORTHO05D007685 6.0e-138 495.0 421 58.4
vmacro07758 Vaccinium macrocarpon HOM05D006173 ORTHO05D007685 2.3e-137 493.0 484 53.5
CDE02G3082 Ceratophyllum demersum HOM05D006173 ORTHO05D007685 1.4e-131 473.8 437 54.2
Sc19g0007880 Simmondsia chinensis HOM05D006173 ORTHO05D007685 7.1e-131 471.5 399 59.9
Aqoxy3G01734 Aquilegia oxysepala HOM05D006173 ORTHO05D007685 5.6e-128 461.8 340 65.9
Psat3g082320 Pisum sativum HOM05D006173 ORTHO05D007685 2.9e-116 422.9 356 62.6
RhsimUnG0020600 Rhododendron simsii HOM05D006173 ORTHO05D007685 5.5e-115 418.7 447 51.2
AUR62018437 Chenopodium quinoa HOM05D006173 ORTHO05D007685 9.3e-115 417.9 401 55.4
Mapoly0010s0124 Marchantia polymorpha HOM05D006173 ORTHO05D007685 6.7e-113 411.8 478 45.2
SMO116G0186 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 2.0e-109 400.2 459 45.3
SMO133G0039 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 2.6e-109 399.8 459 45.3
Solyc08g016808.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 6.5e-108 395.2 326 64.4
MBI19_g25019_MAGBIO Magnolia biondii HOM05D006173 ORTHO05D007685 2.0e-104 383.6 387 54.5
Pp3c11_18220 Physcomitrium patens HOM05D006173 ORTHO05D007685 5.0e-100 369.0 457 41.4
Nitab4.5_0003840g0020 Nicotiana tabacum HOM05D006173 ORTHO05D007685 2.1e-98 363.6 285 64.9
VMungo1383G1641 Vigna mungo HOM05D006173 ORTHO05D007685 3.9e-97 359.4 425 48.5
GSVIVG01025850001 Vitis vinifera HOM05D006173 ORTHO05D007685 1.5e-93 347.4 206 78.2
Nitab4.5_0000211g0120 Nicotiana tabacum HOM05D006173 ORTHO05D007685 1.0e-89 334.7 260 65.4
Ca_08352_v3 Cicer arietinum L. HOM05D006173 ORTHO05D007685 2.3e-89 333.6 302 57.3
MD14G1101100 Malus domestica HOM05D006173 ORTHO05D007685 4.4e-88 329.3 209 74.6
RcHm_v2.0_Chr1g0329271 Rosa chinensis HOM05D006173 ORTHO05D007685 3.5e-85 319.7 195 76.9
Lalb_Chr22g0358001 Lupinus albus HOM05D006173 ORTHO05D007685 1.7e-84 317.4 195 75.4
QL07p014498 Quercus lobata HOM05D006173 ORTHO05D007685 1.0e-81 308.1 166 84.9
ATR0307G134 Amborella trichopoda HOM05D006173 ORTHO05D007685 3.0e-81 306.6 196 71.4
HPP92_002170 Vanilla planifolia HOM05D006173 ORTHO05D007685 1.6e-74 284.3 166 75.3
Lj1A24G67 Lonicera japonica HOM05D006173 ORTHO05D007685 8.8e-73 278.5 261 58.2
Solyc08g036600.3 Solanum lycopersicum HOM05D006173 ORTHO05D007685 3.4e-72 276.6 201 66.2
Lj1A24G66 Lonicera japonica HOM05D006173 ORTHO05D007685 6.3e-71 272.3 151 83.4
SMO069G0001 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 1.4e-70 271.2 227 53.7
RcHm_v2.0_Chr1g0329281 Rosa chinensis HOM05D006173 ORTHO05D007685 7.7e-69 265.4 222 59.0
FAN03G1994 Fragaria x ananassa HOM05D006173 ORTHO05D007685 5.0e-68 262.7 230 57.8
unitig_46.g18486 Utricularia gibba HOM05D006173 ORTHO05D007685 2.3e-65 253.8 452 39.6
Lalb_Chr22g0357991 Lupinus albus HOM05D006173 ORTHO05D007685 2.0e-64 250.8 234 55.1
MD14G1101000 Malus domestica HOM05D006173 ORTHO05D007685 9.2e-62 241.9 245 52.7
CANSAT64G0701 Cannabis sativa HOM05D006173 ORTHO05D007685 6.6e-60 235.7 132 81.1
ATR0307G100 Amborella trichopoda HOM05D006173 ORTHO05D007685 1.6e-58 231.1 233 48.5
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 5.2e-57 226.1 205 56.6
QL07p014493 Quercus lobata HOM05D006173 ORTHO05D007685 6.4e-55 219.2 163 60.1
DCAR_020632 Daucus carota HOM05D002466 ORTHO05D002668 3.5e-53 213.4 183 57.4
GSVIVG01025851001 Vitis vinifera HOM05D006173 ORTHO05D007685 4.3e-51 206.5 181 54.1
CBR_g54315 Chara braunii HOM05D006173 ORTHO05D007685 2.9e-47 193.7 388 34.3
SGA_v2.0_scaffold106G30559 Striga asiatica HOM05D000268 ORTHO05D000261 2.9e-47 193.7 261 46.4
Nitab4.5_0000275g0010 Nicotiana tabacum HOM05D006173 ORTHO05D007685 5.8e-40 169.5 85 83.5
TAR623G0990 Trochodendron aralioides HOM05D006173 ORTHO05D007685 3.7e-39 166.8 97 81.4
Nitab4.5_0000211g0140 Nicotiana tabacum HOM05D006173 ORTHO05D007685 8.4e-31 139.0 85 72.9
PRCOL_00002577 Prasinoderma coloniale HOM05D006173 ORTHO05D007685 1.6e-29 134.8 276 30.8
Nitab4.5_0003840g0030 Nicotiana tabacum HOM05D006173 ORTHO05D007685 1.7e-28 131.3 70 78.6
Lj2A730T36 Lonicera japonica HOM05D006173 ORTHO05D007685 2.2e-23 114.4 241 35.7
MCO12G281 Micromonas commoda HOM05D006173 ORTHO05D007685 3.3e-19 100.5 267 29.2
Lsat_1_v5_gn_4_93961 Lactuca sativa HOM05D006173 ORTHO05D007685 9.9e-16 89.0 54 70.4
Lj2A730T35 Lonicera japonica HOM05D006173 ORTHO05D007685 2.9e-15 87.4 51 80.4
Os12g0131300 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 2.9e-15 87.4 95 45.3
Cre10.g466300 Chlamydomonas reinhardtii HOM05D006173 ORTHO05D007685 2.3e-12 77.8 351 27.9


User provided reference genes

Program Settings