Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.J01158 Erythranthe guttata HOM05D003776 ORTHO05D004459 0.0e+00 3635.5 1865 100.0
MSTRG.19598 Avicennia marina HOM05D003776 ORTHO05D004459 0.0e+00 3023.8 1879 81.8
Sopen12g002420 Solanum pennellii HOM05D003776 ORTHO05D004459 0.0e+00 2653.6 1877 71.9
GSVIVG01015528001 Vitis vinifera HOM05D003776 ORTHO05D004459 0.0e+00 2647.1 1889 71.3
Solyc12g006480.2 Solanum lycopersicum HOM05D003776 ORTHO05D004459 0.0e+00 2635.5 1877 71.6
Rhsim03G0247900 Rhododendron simsii HOM05D003776 ORTHO05D004459 0.0e+00 2632.1 1915 70.4
Dinv36529 Davidia involucrata HOM05D003776 ORTHO05D004459 0.0e+00 2607.4 1905 70.7
Cc06_g08530 Coffea canephora HOM05D003776 ORTHO05D004459 0.0e+00 2604.7 1882 70.4
TAR625G0211 Trochodendron aralioides HOM05D003776 ORTHO05D004459 0.0e+00 2596.6 1888 70.3
Thecc.09G126200 Theobroma cacao HOM05D003776 ORTHO05D004459 0.0e+00 2583.5 1891 69.6
Cfa003371 Carpinus fangiana HOM05D003776 ORTHO05D004459 0.0e+00 2575.0 1889 70.1
MD02G1032900 Malus domestica HOM05D003776 ORTHO05D004459 0.0e+00 2561.2 1889 69.1
CANSAT11G0130 Cannabis sativa HOM05D003776 ORTHO05D004459 0.0e+00 2555.4 1891 68.3
Prupe.7G242500 Prunus persica HOM05D003776 ORTHO05D004459 0.0e+00 2552.3 1896 69.0
Nitab4.5_0002658g0150 Nicotiana tabacum HOM05D003776 ORTHO05D004459 0.0e+00 2551.9 1893 70.1
Nn8g39448 Nelumbo nucifera HOM05D003776 ORTHO05D004459 0.0e+00 2551.2 1884 69.0
Atru.chr7.1164 Acer truncatum HOM05D003776 ORTHO05D004459 0.0e+00 2548.9 1888 69.1
vmacro06129 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 0.0e+00 2545.0 1948 67.7
Peaxi162Scf01211g00016 Petunia axillaris HOM05D003776 ORTHO05D004459 0.0e+00 2540.8 1943 68.6
RcHm_v2.0_Chr2g0088511 Rosa chinensis HOM05D003776 ORTHO05D004459 0.0e+00 2519.6 1889 68.2
Manes.05G119700 Manihot esculenta HOM05D003776 ORTHO05D004459 0.0e+00 2518.0 1888 68.3
ECA234G1804 Erigeron canadensis HOM05D003776 ORTHO05D004459 0.0e+00 2514.6 1886 68.1
FvH4_1g03320 Fragaria vesca HOM05D003776 ORTHO05D004459 0.0e+00 2513.0 1890 67.8
FAN26G1438 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2502.2 1890 67.6
FAN23G1640 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2498.8 1888 67.6
Sc08g0006640 Simmondsia chinensis HOM05D003776 ORTHO05D004459 0.0e+00 2497.6 1885 66.5
TWI34G1787 Tripterygium wilfordii HOM05D003776 ORTHO05D004459 0.0e+00 2495.7 1889 67.5
Lsat_1_v5_gn_5_96021 Lactuca sativa HOM05D003776 ORTHO05D004459 0.0e+00 2493.4 1885 67.7
Glyma.06G222100 Glycine max HOM05D003776 ORTHO05D004459 0.0e+00 2492.2 1888 67.5
Lj3g0001115 Lotus japonicus HOM05D003776 ORTHO05D004459 0.0e+00 2489.5 1889 67.4
Potri.006G119600 Populus trichocarpa HOM05D003776 ORTHO05D004459 0.0e+00 2479.9 1892 67.9
HanXRQChr10g0315491 Helianthus annuus HOM05D003776 ORTHO05D004459 0.0e+00 2475.7 1873 68.2
Haze_25580 Corylus avellana HOM05D003776 ORTHO05D004459 0.0e+00 2471.4 1922 67.2
Lalb_Chr11g0072121 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 2471.4 1898 67.2
Eucgr.C04218 Eucalyptus grandis HOM05D003776 ORTHO05D004459 0.0e+00 2455.2 1892 66.6
Medtr7g099880 Medicago truncatula HOM05D003776 ORTHO05D004459 0.0e+00 2451.8 1897 66.3
Phvul.009G198200 Phaseolus vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 2450.6 1891 66.8
FAN28G2120 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2449.5 1890 66.6
TPR.G21471 Trifolium pratense HOM05D003776 ORTHO05D004459 0.0e+00 2445.6 1896 66.2
Ca_14403_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 0.0e+00 2445.2 1892 65.9
Psat1g024680 Pisum sativum HOM05D003776 ORTHO05D004459 0.0e+00 2442.5 1897 65.8
Gorai.001G042000 Gossypium raimondii HOM05D003776 ORTHO05D004459 0.0e+00 2431.4 1906 65.6
FAN19G1245 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2421.4 1896 65.8
Aqoxy7G02178 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 2411.3 1884 65.7
Sabra06G0094200 Salix brachista HOM05D003776 ORTHO05D004459 0.0e+00 2399.8 2019 63.2
Aqoxy3G01756 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 2392.1 1884 65.5
PGR102G3028 Punica granatum HOM05D003776 ORTHO05D004459 0.0e+00 2380.5 1893 65.1
EL10Ac8g18652 Beta vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 2379.7 1905 64.6
Sed0006794 Sechium edule HOM05D003776 ORTHO05D004459 0.0e+00 2379.4 1890 64.2
CsaV3_2G002830 Cucumis sativus L. HOM05D003776 ORTHO05D004459 0.0e+00 2372.8 1889 63.5
Duzib168G2222 Durio zibethinus HOM05D003776 ORTHO05D004459 0.0e+00 2372.4 1898 65.3
DCAR_017818 Daucus carota HOM05D003776 ORTHO05D004459 0.0e+00 2365.5 1950 62.6
THA.LOC104808989 Tarenaya hassleriana HOM05D003776 ORTHO05D004459 0.0e+00 2363.2 1884 63.9
PSO455G0084 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 2338.9 1896 64.3
AUR62013362 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 2331.2 1888 64.0
Hund09133 Selenicereus undatus HOM05D003776 ORTHO05D004459 0.0e+00 2330.4 1890 63.7
PSO170G4267 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 2323.9 1891 64.1
Lj7C629G11 Lonicera japonica HOM05D003776 ORTHO05D004459 0.0e+00 2310.8 1920 63.5
QL02p088328 Quercus lobata HOM05D003776 ORTHO05D004459 0.0e+00 2310.8 1715 69.1
AL8G25470 Arabidopsis lyrata HOM05D003776 ORTHO05D004459 0.0e+00 2291.2 1879 61.8
AT5G51200 Arabidopsis thaliana HOM05D003776 ORTHO05D004459 0.0e+00 2290.4 1880 61.9
Carub.0008s1091 Capsella rubella HOM05D003776 ORTHO05D004459 0.0e+00 2290.0 1875 62.0
CARHR118630 Cardamine hirsuta HOM05D003776 ORTHO05D004459 0.0e+00 2285.0 1879 62.1
Sp4g09050 Schrenkiella parvula HOM05D003776 ORTHO05D004459 0.0e+00 2281.5 1881 61.9
AUR62011127 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 2276.1 1884 63.1
VMungo1309G0107 Vigna mungo HOM05D003776 ORTHO05D004459 0.0e+00 2234.1 2317 53.8
Thhalv10002339m.g Eutrema salsugineum HOM05D003776 ORTHO05D004459 0.0e+00 2215.7 1877 60.5
BraA07t29494Z Brassica rapa HOM05D003776 ORTHO05D004459 0.0e+00 2209.1 1919 59.8
MELO3C004510.2 Cucumis melo HOM05D003776 ORTHO05D004459 0.0e+00 2196.0 2020 57.1
A07p17720 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 2192.5 1887 60.1
CiPaw.03G244000 Carya illinoinensis HOM05D003776 ORTHO05D004459 0.0e+00 2191.0 1636 68.4
C07p25670 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 2185.6 1888 59.7
BolC7t43085H Brassica oleracea HOM05D003776 ORTHO05D004459 0.0e+00 2181.0 1889 59.7
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 0.0e+00 2173.3 1884 59.2
ClCG11G003010 Citrullus lanatus HOM05D003776 ORTHO05D004459 0.0e+00 2169.0 1877 60.1
Gohir.A07G035800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 0.0e+00 2096.6 1589 66.6
Oeu055885.1 Olea europaea HOM05D003776 ORTHO05D004459 0.0e+00 2022.3 1426 73.2
Ciclev10007244m.g Citrus clementina HOM05D003776 ORTHO05D004459 0.0e+00 2014.2 1509 69.2
Gohir.D07G039800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 0.0e+00 1963.3 1477 67.2
ATR0322G072 Amborella trichopoda HOM05D003776 ORTHO05D004459 0.0e+00 1846.6 1580 60.9
arahy.Tifrunner.gnm1.ann1.GK8SHH Arachis hypogaea HOM05D003776 ORTHO05D004459 0.0e+00 1840.1 1456 65.4
Nitab4.5_0008846g0010 Nicotiana tabacum HOM05D003776 ORTHO05D004459 0.0e+00 1759.2 1424 65.4
COL.COLO4_35084 Corchorus olitorius HOM05D003776 ORTHO05D004459 0.0e+00 1688.3 1187 71.9
Pp3c4_20350 Physcomitrium patens HOM05D003776 ORTHO05D004459 0.0e+00 1679.5 1918 47.5
Mapoly0052s0095 Marchantia polymorpha HOM05D003776 ORTHO05D004459 0.0e+00 1639.0 1901 46.7
Zm00001eb235620 Zea mays HOM05D003776 ORTHO05D004459 0.0e+00 1573.9 1439 56.2
AagrBONN_evm.TU.Sc2ySwM_228.87 Anthoceros agrestis HOM05D003776 ORTHO05D004459 0.0e+00 1562.7 1895 45.7
Actinidia26393 Actinidia chinensis HOM05D003776 ORTHO05D004459 0.0e+00 1522.3 1882 48.9
SMO347G0235 Selaginella moellendorffii HOM05D003776 ORTHO05D004459 0.0e+00 1509.2 1914 44.1
Ah.09g226230 Amaranthus hybridus HOM05D003776 ORTHO05D004459 0.0e+00 1434.1 1214 61.4
Os02g0202250 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 0.0e+00 1293.5 1224 55.1
Lalb_Chr08g0234831 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 1229.5 841 71.8
CBR_g37692 Chara braunii HOM05D003776 ORTHO05D004459 0.0e+00 1226.8 1960 38.0
Lalb_Chr08g0234811 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 1144.4 958 63.3
CDE02G1576 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 0.0e+00 1139.0 1114 55.7
RcHm_v2.0_Chr2g0152361 Rosa chinensis HOM05D003776 ORTHO05D004459 0.0e+00 1080.9 1642 41.6
unitig_26.g8982 Utricularia gibba HOM05D003776 ORTHO05D004459 9.7e-302 1041.2 784 67.3
HPP92_008667 Vanilla planifolia HOM05D003776 ORTHO05D004459 5.0e-298 1028.9 1230 47.9
CDE02G1439 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 1.9e-297 1026.9 783 65.4
RcHm_v2.0_Chr2g0152391 Rosa chinensis HOM05D003776 ORTHO05D004459 4.1e-284 982.6 1642 39.0
HPP92_008649 Vanilla planifolia HOM05D003776 ORTHO05D004459 5.6e-249 865.9 752 58.0
Ah.09g226220 Amaranthus hybridus HOM05D003776 ORTHO05D004459 3.3e-233 813.5 693 61.3
Duzib187G1323 Durio zibethinus HOM05D003776 ORTHO05D004459 1.1e-228 798.5 699 60.7
FvH4_6g38790 Fragaria vesca HOM05D003776 ORTHO05D004459 2.4e-223 780.8 1058 44.6
CAN.G816.2 Capsicum annuum HOM05D003776 ORTHO05D004459 1.4e-215 755.0 596 66.8
Pp3c23_3420 Physcomitrium patens HOM05D003776 ORTHO05D004459 3.1e-207 727.2 1035 40.3
Pp3c20_13260 Physcomitrium patens HOM05D003776 ORTHO05D004459 2.2e-205 721.1 1048 41.6
Cpa.g.sc75.31 Carica papaya HOM05D003776 ORTHO05D004459 1.5e-185 655.2 518 65.8
SEGI_34338 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 1.2e-182 645.6 708 49.4
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 8.2e-176 622.9 514 63.8
Hma1.2p1_0018F.1_g012430 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 3.5e-158 564.3 492 61.4
Os02g0202300 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 6.4e-128 463.8 400 58.0
Cpa.g.sc75.30 Carica papaya HOM05D003776 ORTHO05D004459 8.7e-109 400.2 400 54.8
Cpa.g.c32453 Carica papaya HOM05D003776 ORTHO05D004459 3.0e-101 375.2 299 66.2
Oeu055886.1 Olea europaea HOM05D003776 ORTHO05D004459 7.3e-100 370.5 317 65.3
arahy.Tifrunner.gnm1.ann1.6DBV70 Arachis hypogaea HOM05D003776 ORTHO05D004459 1.3e-96 359.8 413 50.4
HanXRQChr12g0373951 Helianthus annuus HOM05D003776 ORTHO05D004459 1.8e-93 349.4 329 58.7
Psat0s3979g0040 Pisum sativum HOM05D003776 ORTHO05D004459 2.3e-93 349.0 363 52.3
CiPaw.03G243900 Carya illinoinensis HOM05D003776 ORTHO05D004459 3.9e-93 348.2 230 77.0
Hma1.2p1_0018F.1_g012440 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 5.1e-93 347.8 210 81.9
Hma1.2p1_2368F.1_g320720 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 5.8e-89 334.3 348 55.2
HanXRQChr04g0119281 Helianthus annuus HOM05D003776 ORTHO05D004459 2.2e-88 332.4 330 58.2
FAN19G2182 Fragaria x ananassa HOM05D003776 ORTHO05D004459 1.5e-84 319.7 277 57.8
Lsat_1_v5_gn_7_7080 Lactuca sativa HOM05D003776 ORTHO05D004459 1.6e-78 299.7 300 55.3
HPP92_008648 Vanilla planifolia HOM05D003776 ORTHO05D004459 1.7e-72 279.6 356 45.2
QL02p088302 Quercus lobata HOM05D003776 ORTHO05D004459 1.8e-69 269.6 176 76.7
Ca_29538_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 2.7e-62 245.7 265 53.6
SEGI_08250 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 5.7e-60 238.0 182 65.9
SHI03382 Sapria himalayana HOM05D003776 ORTHO05D004459 1.3e-56 226.9 211 59.2
Peaxi162Scf00574g00927 Petunia axillaris HOM05D003776 ORTHO05D004459 1.1e-55 223.8 301 46.8
Lsat_1_v5_gn_3_39400 Lactuca sativa HOM05D003776 ORTHO05D004459 4.1e-50 205.3 216 54.2
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 1.0e-48 200.7 223 50.7
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 1.0e-48 200.7 223 50.7
RcHm_v2.0_Chr5g0007291 Rosa chinensis HOM05D003776 ORTHO05D004459 6.5e-48 198.0 330 40.6
FvH4_6g38782 Fragaria vesca HOM05D003776 ORTHO05D004459 1.9e-47 196.4 379 36.7
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 2.1e-46 193.0 211 49.3
PRCOL_00003394 Prasinoderma coloniale HOM05D003776 ORTHO05D004459 2.7e-46 192.6 1707 21.7
Psat0s1308g0040 Pisum sativum HOM05D002636 ORTHO05D004459 7.2e-39 167.9 151 61.6
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 8.0e-38 164.5 151 62.3
SEGI_13925 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 1.7e-35 156.8 124 60.5
Psat7g006280 Pisum sativum HOM05D003776 ORTHO05D004459 1.8e-34 153.3 126 64.3
RcHm_v2.0_Chr5g0007331 Rosa chinensis HOM05D003776 ORTHO05D004459 4.1e-34 152.1 399 31.8
Actinidia07427 Actinidia chinensis HOM05D003776 ORTHO05D004459 1.2e-33 150.6 169 54.4
Lsat_1_v5_gn_5_62781 Lactuca sativa HOM05D003776 ORTHO05D004459 5.9e-33 148.3 326 32.8
Psat5g250280 Pisum sativum HOM05D003776 ORTHO05D004459 1.7e-32 146.7 132 60.6
Cpa.g.c42453 Carica papaya HOM05D003776 ORTHO05D004459 3.3e-31 142.5 82 79.3
MCO11G810 Micromonas commoda HOM05D003776 ORTHO05D004459 1.8e-29 136.7 765 21.7
Cre13.g578100 Chlamydomonas reinhardtii HOM05D003776 ORTHO05D004459 2.7e-25 122.9 962 23.0
ECA246G1679 Erigeron canadensis HOM05D003776 ORTHO05D004459 4.5e-25 122.1 147 49.0
ATR0322G028 Amborella trichopoda HOM05D003776 ORTHO05D004459 1.0e-24 120.9 167 44.3
Cpa.g.c37328 Carica papaya HOM05D003776 ORTHO05D004459 6.6e-24 118.2 75 76.0
SHI03385 Sapria himalayana HOM05D003776 ORTHO05D004459 6.6e-24 118.2 117 57.3
ATR0322G071 Amborella trichopoda HOM05D003776 ORTHO05D004459 2.8e-22 112.8 80 65.0
Cpa.g.sc75.37 Carica papaya HOM05D003776 ORTHO05D004459 3.6e-22 112.5 81 70.4
RcHm_v2.0_Chr3g0479611 Rosa chinensis HOM05D003776 ORTHO05D004459 1.0e-21 110.9 98 57.1
HPP92_008668 Vanilla planifolia HOM05D003776 ORTHO05D004459 4.4e-20 105.5 254 33.5
MD16G1253500 Malus domestica HOM05D003776 ORTHO05D004459 6.4e-19 101.7 107 53.3
SEGI_04425 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 1.4e-18 100.5 103 46.6
Peaxi162Scf00062g02012 Petunia axillaris HOM05D003776 ORTHO05D004459 2.3e-16 93.2 104 51.9
Peaxi162Scf00574g00919 Petunia axillaris HOM05D003776 ORTHO05D004459 8.6e-16 91.3 104 51.0
RcHm_v2.0_Chr5g0007211 Rosa chinensis HOM05D003776 ORTHO05D004459 8.6e-16 91.3 57 75.4
arahy.Tifrunner.gnm1.ann1.HIW0J1 Arachis hypogaea HOM05D003776 ORTHO05D004459 1.6e-14 87.0 72 62.5
CAN.G1024.1 Capsicum annuum HOM05D003776 ORTHO05D002238 7.5e-12 78.2 89 53.9
MBI13_g38968_MAGBIO Magnolia biondii HOM05D003776 ORTHO05D004459 6.4e-11 75.1 55 65.5
SalBow1G5037 Salvia bowleyana HOM05D001898 ORTHO05D002580 1.9e-10 73.6 37 89.2
Actinidia07426 Actinidia chinensis HOM05D003776 ORTHO05D004459 3.2e-10 72.8 80 50.0
PSO478G0731 Papaver somniferum HOM05D003776 ORTHO05D004459 5.4e-10 72.0 70 61.4
CBR_g76107 Chara braunii HOM05D003776 ORTHO05D004459 3.5e-09 69.3 64 48.4
SEGI_27908 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 1.0e-08 67.8 43 67.4
Prupe.1G010000 Prunus persica HOM05D003776 ORTHO05D004459 1.7e-08 67.0 91 49.5
SalBow8G3232 Salvia bowleyana HOM05D002512 ORTHO05D002660 8.6e-08 64.7 34 85.3
CAN.G1616.4 Capsicum annuum HOM05D003776 ORTHO05D004459 1.1e-07 64.3 52 69.2
MBI06_g09275_MAGBIO Magnolia biondii HOM05D003776 ORTHO05D004459 2.5e-07 63.2 44 65.9
SEGI_19045 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 3.3e-07 62.8 66 50.0


User provided reference genes

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