Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.J01004 Erythranthe guttata HOM05D004216 ORTHO05D004926 0.0e+00 2853.2 1496 100.0
SalBow3G4568 Salvia bowleyana HOM05D004216 ORTHO05D004926 0.0e+00 2082.0 1569 73.0
MSTRG.5865 Avicennia marina HOM05D004216 ORTHO05D004926 0.0e+00 2023.4 1516 72.8
SGA_v2.0_scaffold13G06699 Striga asiatica HOM05D004216 ORTHO05D004926 0.0e+00 1859.0 1319 74.2
Oeu004769.3 Olea europaea HOM05D004216 ORTHO05D004926 0.0e+00 1781.5 1564 65.0
Cc04_g07550 Coffea canephora HOM05D004216 ORTHO05D004926 0.0e+00 1766.1 1530 64.1
Dinv38590 Davidia involucrata HOM05D004216 ORTHO05D004926 0.0e+00 1744.9 1525 64.1
Nitab4.5_0001599g0210 Nicotiana tabacum HOM05D004216 ORTHO05D004926 0.0e+00 1705.6 1558 60.8
Nitab4.5_0000410g0130 Nicotiana tabacum HOM05D004216 ORTHO05D004926 0.0e+00 1696.4 1554 60.9
CSS0006085 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 0.0e+00 1682.2 1503 62.1
CSS0012337 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 0.0e+00 1682.2 1503 62.1
CAN.G438.113 Capsicum annuum HOM05D004216 ORTHO05D004926 0.0e+00 1667.5 1554 59.5
Hma1.2p1_0595F.1_g186000 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 0.0e+00 1652.1 1499 62.5
Sopen03g038630 Solanum pennellii HOM05D004216 ORTHO05D004926 0.0e+00 1643.2 1564 59.5
HanXRQChr05g0153841 Helianthus annuus HOM05D004216 ORTHO05D004926 0.0e+00 1596.3 1310 63.9
QL10p022943 Quercus lobata HOM05D004216 ORTHO05D004926 0.0e+00 1589.3 1319 62.7
CiPaw.15G126300 Carya illinoinensis HOM05D004216 ORTHO05D004926 0.0e+00 1586.6 1307 63.7
Cfa019828 Carpinus fangiana HOM05D004216 ORTHO05D004926 0.0e+00 1584.7 1309 62.9
RcHm_v2.0_Chr7g0184581 Rosa chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1577.8 1537 58.4
Nn4g23713 Nelumbo nucifera HOM05D004216 ORTHO05D004926 0.0e+00 1572.0 1311 63.3
FAN18G1390 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1565.8 1530 58.6
Lsat_1_v5_gn_5_25060 Lactuca sativa HOM05D004216 ORTHO05D004926 0.0e+00 1563.5 1334 62.4
FvH4_5g12730 Fragaria vesca HOM05D004216 ORTHO05D004926 0.0e+00 1559.7 1533 58.4
FAN08G0408 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1556.2 1544 57.8
Solyc03g119780.4 Solanum lycopersicum HOM05D004216 ORTHO05D004926 0.0e+00 1554.7 1032 74.9
FAN13G0239 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1552.7 1537 57.7
Ciclev10018514m.g Citrus clementina HOM05D004216 ORTHO05D004926 0.0e+00 1536.5 1310 61.4
Lj4g0001448 Lotus japonicus HOM05D004216 ORTHO05D004926 0.0e+00 1535.4 1305 62.1
Manes.05G119100 Manihot esculenta HOM05D004216 ORTHO05D004926 0.0e+00 1535.0 1510 56.7
TWI81G0292 Tripterygium wilfordii HOM05D004216 ORTHO05D004926 0.0e+00 1526.5 1313 61.1
arahy.Tifrunner.gnm1.ann1.868KN4 Arachis hypogaea HOM05D004216 ORTHO05D004926 0.0e+00 1526.1 1313 62.2
arahy.Tifrunner.gnm1.ann1.CB5LZE Arachis hypogaea HOM05D004216 ORTHO05D004926 0.0e+00 1525.0 1310 62.6
unitig_578.g15823 Utricularia gibba HOM05D004216 ORTHO05D004926 0.0e+00 1524.6 1530 58.6
FAN18G2177 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1523.8 1530 57.6
Ca_02536_v3 Cicer arietinum L. HOM05D004216 ORTHO05D004926 0.0e+00 1523.5 1308 62.1
Actinidia31032 Actinidia chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1523.1 1274 63.3
Thecc.03G027900 Theobroma cacao HOM05D004216 ORTHO05D004926 0.0e+00 1521.9 1323 61.5
Glyma.17G121600 Glycine max HOM05D004216 ORTHO05D004926 0.0e+00 1520.8 1511 57.1
Lalb_Chr12g0197541 Lupinus albus HOM05D004216 ORTHO05D004926 0.0e+00 1520.0 1499 57.3
PGR044G2306 Punica granatum HOM05D004216 ORTHO05D004926 0.0e+00 1518.1 1511 57.1
Eucgr.K02653 Eucalyptus grandis HOM05D004216 ORTHO05D004926 0.0e+00 1517.7 1332 60.1
Peaxi162Scf00015g00072 Petunia axillaris HOM05D004216 ORTHO05D004926 0.0e+00 1516.9 1565 56.5
Potri.015G050800 Populus trichocarpa HOM05D004216 ORTHO05D004926 0.0e+00 1512.7 1311 60.3
TPR.G26791 Trifolium pratense HOM05D004216 ORTHO05D004926 0.0e+00 1510.0 1309 61.1
VMungo1215G1362 Vigna mungo HOM05D004216 ORTHO05D004926 0.0e+00 1509.6 1503 57.2
Aqoxy3G03901 Aquilegia oxysepala HOM05D004216 ORTHO05D004926 0.0e+00 1503.8 1318 61.2
Phvul.003G177400 Phaseolus vulgaris HOM05D004216 ORTHO05D004926 0.0e+00 1500.3 1307 62.0
CANSAT80G0956 Cannabis sativa HOM05D004216 ORTHO05D004926 0.0e+00 1499.6 1387 57.3
Gorai.001G045800 Gossypium raimondii HOM05D004216 ORTHO05D004926 0.0e+00 1496.5 1309 60.5
Atru.chr9.749 Acer truncatum HOM05D004216 ORTHO05D004926 0.0e+00 1493.4 1324 59.8
FAN04G0815 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1490.3 1268 62.2
MELO3C002074.2 Cucumis melo HOM05D004216 ORTHO05D004926 0.0e+00 1486.5 1294 60.5
Hund02527 Selenicereus undatus HOM05D004216 ORTHO05D004926 0.0e+00 1486.1 1308 59.3
AUR62036947 Chenopodium quinoa HOM05D004216 ORTHO05D004926 0.0e+00 1481.5 1372 56.5
AUR62032188 Chenopodium quinoa HOM05D004216 ORTHO05D004926 0.0e+00 1476.1 1357 56.9
PSO478G4514 Papaver somniferum HOM05D004216 ORTHO05D004926 0.0e+00 1475.7 1332 59.9
Glyma.05G013400 Glycine max HOM05D004216 ORTHO05D004926 0.0e+00 1474.9 1308 60.7
PSO017G0533 Papaver somniferum HOM05D004216 ORTHO05D004926 0.0e+00 1474.1 1332 60.1
GSVIVG01008230001 Vitis vinifera HOM05D004216 ORTHO05D004926 0.0e+00 1471.8 1226 62.7
CsaV3_1G006480 Cucumis sativus L. HOM05D004216 ORTHO05D004926 0.0e+00 1467.2 1294 59.8
Sc10g0009590 Simmondsia chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1462.2 1541 54.6
ClCG04G011280 Citrullus lanatus HOM05D004216 ORTHO05D004926 0.0e+00 1454.5 1295 59.5
ATR0564G329 Amborella trichopoda HOM05D004216 ORTHO05D004926 0.0e+00 1434.5 1337 57.7
Sed0006394 Sechium edule HOM05D004216 ORTHO05D004926 0.0e+00 1430.6 1306 58.0
EL10Ac5g11246 Beta vulgaris HOM05D004216 ORTHO05D004926 0.0e+00 1428.3 1305 56.8
ECA246G5151 Erigeron canadensis HOM05D004216 ORTHO05D004926 0.0e+00 1422.5 1236 61.7
DCAR_001432 Daucus carota HOM05D004216 ORTHO05D004926 0.0e+00 1412.9 1321 58.5
Duzib205G0916 Durio zibethinus HOM05D004216 ORTHO05D004926 0.0e+00 1371.7 1317 56.9
AL2G33790 Arabidopsis lyrata HOM05D004216 ORTHO05D004926 0.0e+00 1367.1 1300 55.8
Thhalv10018013m.g Eutrema salsugineum HOM05D004216 ORTHO05D004926 0.0e+00 1366.7 1297 55.5
AT1G73960 Arabidopsis thaliana HOM05D004216 ORTHO05D004926 0.0e+00 1364.4 1322 55.6
CARHR067070 Cardamine hirsuta HOM05D004216 ORTHO05D004926 0.0e+00 1361.3 1304 55.5
THA.LOC104812129 Tarenaya hassleriana HOM05D004216 ORTHO05D004926 0.0e+00 1360.9 1314 56.2
Carub.0002s2073 Capsella rubella HOM05D004216 ORTHO05D004926 0.0e+00 1360.5 1303 55.6
Sp5g29160 Schrenkiella parvula HOM05D004216 ORTHO05D004926 0.0e+00 1350.1 1303 55.6
CDE05G2534 Ceratophyllum demersum HOM05D004216 ORTHO05D004926 0.0e+00 1341.3 1012 64.9
BolC6t39842H Brassica oleracea HOM05D004216 ORTHO05D004926 0.0e+00 1338.9 1302 54.5
C06p48070 Brassica napus HOM05D004216 ORTHO05D004926 0.0e+00 1337.8 1324 53.7
Aa31LG4G4250 Aethionema arabicum HOM05D004216 ORTHO05D004926 0.0e+00 1337.4 1304 55.2
HPP92_023478 Vanilla planifolia HOM05D004216 ORTHO05D004926 0.0e+00 1335.5 1313 53.8
A07p39800 Brassica napus HOM05D004216 ORTHO05D004926 0.0e+00 1332.4 1299 55.1
Prupe.5G217000 Prunus persica HOM05D004216 ORTHO05D004926 0.0e+00 1332.0 1113 62.9
BraA07t31527Z Brassica rapa HOM05D004216 ORTHO05D004926 0.0e+00 1323.5 1335 54.0
Gohir.A07G038666 Gossypium hirsutum HOM05D004216 ORTHO05D004926 0.0e+00 1303.9 1284 56.2
Psat4g043600 Pisum sativum HOM05D004216 ORTHO05D004926 0.0e+00 1292.7 1117 61.1
Ah.11g047140 Amaranthus hybridus HOM05D004216 ORTHO05D004926 0.0e+00 1278.5 1258 54.1
Rhsim08G0138000 Rhododendron simsii HOM05D004216 ORTHO05D004926 0.0e+00 1269.6 862 73.8
MD06G1211000 Malus domestica HOM05D004216 ORTHO05D004926 0.0e+00 1231.1 1084 60.5
Hma1.2p1_0595F.1_g186010 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 0.0e+00 1219.5 770 78.6
Zm00001eb312360 Zea mays HOM05D004216 ORTHO05D004926 0.0e+00 1214.5 1407 48.6
TAR371G0728 Trochodendron aralioides HOM05D004216 ORTHO05D004926 0.0e+00 1163.3 1225 56.7
SEGI_21625 Sequoiadendron giganteum HOM05D004216 ORTHO05D004926 0.0e+00 1158.7 852 66.8
Gohir.A07G038732 Gossypium hirsutum HOM05D004216 ORTHO05D004926 0.0e+00 1094.7 771 70.0
Sabra15G0075800 Salix brachista HOM05D004216 ORTHO05D004926 4.0e-306 1055.4 865 62.1
Mapoly0014s0115 Marchantia polymorpha HOM05D004216 ORTHO05D004926 8.9e-298 1027.7 1039 52.1
Pp3c18_6100 Physcomitrium patens HOM05D004216 ORTHO05D004926 9.8e-297 1024.2 1075 50.0
Pp3c21_15920 Physcomitrium patens HOM05D004216 ORTHO05D004926 3.2e-287 992.6 1027 50.3
Lj9A432G69 Lonicera japonica HOM05D004216 ORTHO05D004926 1.5e-284 983.8 849 62.8
SMO367G1244 Selaginella moellendorffii HOM05D004216 ORTHO05D004926 1.3e-248 864.4 1045 47.5
vmacro17679 Vaccinium macrocarpon HOM05D004216 ORTHO05D004926 8.4e-240 835.1 481 83.4
AagrBONN_evm.TU.Sc2ySwM_117.3880 Anthoceros agrestis HOM05D004216 ORTHO05D004926 2.4e-218 763.8 816 49.9
COL.COLO4_22716 Corchorus olitorius HOM05D004216 ORTHO05D004926 1.7e-203 714.5 1011 47.1
HPP92_023454 Vanilla planifolia HOM05D004216 ORTHO05D004926 1.4e-189 668.3 814 46.7
Gohir.D07G042740 Gossypium hirsutum HOM05D004216 ORTHO05D004926 4.4e-180 636.7 676 53.8
COL.COLO4_22715 Corchorus olitorius HOM05D004216 ORTHO05D004926 4.0e-173 613.6 488 64.8
Haze_18610 Corylus avellana HOM05D004216 ORTHO05D004926 6.8e-165 586.3 667 50.8
Haze_18611 Corylus avellana HOM05D004216 ORTHO05D004926 1.5e-164 585.1 667 50.7
SEGI_35421 Sequoiadendron giganteum HOM05D004216 ORTHO05D004926 5.4e-162 576.6 498 58.8
Lj9P432G41 Lonicera japonica HOM05D004216 ORTHO05D004926 5.8e-148 530.0 373 70.5
Cpa.g.sc1020.1 Carica papaya HOM05D004216 ORTHO05D004926 2.8e-142 511.1 309 77.7
Os09g0410125 Oryza sativa ssp. japonica HOM05D004216 ORTHO05D004926 1.4e-117 429.1 327 65.1
TAR371G0173 Trochodendron aralioides HOM05D004216 ORTHO05D004926 1.2e-105 389.4 295 65.1
Cpa.g.sc13.49 Carica papaya HOM05D004216 ORTHO05D004926 5.9e-100 370.5 524 45.2
Gohir.D07G042820 Gossypium hirsutum HOM05D004216 ORTHO05D004926 5.5e-98 364.0 233 76.8
vmacro17678 Vaccinium macrocarpon HOM05D004216 ORTHO05D004926 5.4e-85 320.9 494 46.4
Haze_18609 Corylus avellana HOM05D004216 ORTHO05D004926 4.7e-81 307.8 208 68.8
Medtr1014s0010 Medicago truncatula HOM05D004216 ORTHO05D004926 8.0e-81 307.0 206 70.4
Rhsim08G0137900 Rhododendron simsii HOM05D004216 ORTHO05D004926 1.0e-80 306.6 507 43.2
MD06G1210800 Malus domestica HOM05D004216 ORTHO05D004926 6.8e-72 277.3 230 61.3
Gohir.D07G042780 Gossypium hirsutum HOM05D004216 ORTHO05D004926 2.4e-69 268.9 173 73.4
Cfa022283 Carpinus fangiana HOM05D004216 ORTHO05D004926 2.0e-68 265.8 905 25.6
Cre13.g583500 Chlamydomonas reinhardtii HOM05D004216 ORTHO05D004926 1.5e-66 259.6 727 28.1
PGSC0003DMG400005622 Solanum tuberosum HOM05D004216 ORTHO05D004926 5.2e-56 224.6 624 35.7
PRCOL_00003918 Prasinoderma coloniale HOM05D004216 ORTHO05D004926 5.8e-55 221.1 615 28.3
Cpa.g.sc13.56 Carica papaya HOM05D004216 ORTHO05D004926 8.3e-54 217.2 145 69.0
arahy.Tifrunner.gnm1.ann1.1HJL67 Arachis hypogaea HOM05D004216 ORTHO05D004926 8.9e-48 197.2 142 66.2
Medtr1091s0010 Medicago truncatula HOM05D004216 ORTHO05D004926 4.1e-45 188.3 115 77.4
Cpa.g.sc13.54 Carica papaya HOM05D004216 ORTHO05D004926 4.7e-41 174.9 104 80.8
Haze_18607 Corylus avellana HOM05D004216 ORTHO05D004926 5.2e-40 171.4 125 68.0
SHI18928 Sapria himalayana HOM05D004216 ORTHO05D004926 1.2e-39 170.2 139 61.9
Gohir.D07G042860 Gossypium hirsutum HOM05D004216 ORTHO05D004926 7.6e-39 167.5 176 52.8
Actinidia39807 Actinidia chinensis HOM05D004216 ORTHO05D004926 8.4e-38 164.1 232 43.5
Cpa.g.sc1020.2 Carica papaya HOM05D004216 ORTHO05D004926 3.0e-35 155.6 130 61.5
Medtr7g029065 Medicago truncatula HOM05D004216 ORTHO05D004926 4.8e-33 148.3 364 34.9
SalBow8G1216 Salvia bowleyana HOM05D004216 ORTHO05D004926 8.4e-30 137.5 79 87.3
Lj9A432T73 Lonicera japonica HOM05D004216 ORTHO05D004926 3.2e-29 135.6 85 77.6
Duzib084G0462 Durio zibethinus HOM05D004216 ORTHO05D004926 4.2e-29 135.2 150 52.7
MCO16G579 Micromonas commoda HOM05D004216 ORTHO05D004926 1.6e-28 133.3 680 23.2
Medtr0268s0020 Medicago truncatula HOM05D004216 ORTHO05D004926 3.5e-28 132.1 76 75.0
TAR629G2837 Trochodendron aralioides HOM05D004216 ORTHO05D004926 3.0e-27 129.0 156 46.8
arahy.Tifrunner.gnm1.ann1.CPL525 Arachis hypogaea HOM05D004216 ORTHO05D004926 1.1e-24 120.6 328 32.6
Zm00001eb099360 Zea mays HOM05D004216 ORTHO05D004926 2.6e-23 115.9 105 49.5
Lj6g0001849 Lotus japonicus HOM05D004216 ORTHO05D004926 4.5e-23 115.2 100 56.0
Os09g0409950 Oryza sativa ssp. japonica HOM05D004216 ORTHO05D004926 2.2e-22 112.8 134 46.3
SHI18921 Sapria himalayana HOM05D004216 ORTHO05D004926 1.4e-21 110.2 111 51.4
arahy.Tifrunner.gnm1.ann1.FN32SY Arachis hypogaea HOM05D004216 ORTHO05D004926 5.5e-21 108.2 75 72.0
Lsat_1_v5_gn_3_22081 Lactuca sativa HOM05D001700 ORTHO05D013746 7.9e-20 104.4 97 58.8
DCAR_023664 Daucus carota HOM05D000415 ORTHO05D006649 3.9e-19 102.1 64 75.0
SHI18930 Sapria himalayana HOM05D004216 ORTHO05D004926 8.7e-19 100.9 111 47.7
Lsat_1_v5_gn_4_30120 Lactuca sativa HOM05D004216 ORTHO05D004926 1.1e-18 100.5 88 54.5
arahy.Tifrunner.gnm1.ann1.1842CP Arachis hypogaea HOM05D004216 ORTHO05D004926 1.5e-18 100.1 147 43.5
arahy.Tifrunner.gnm1.ann1.269HHI Arachis hypogaea HOM05D004216 ORTHO05D004926 7.4e-18 97.8 98 57.1
SHI18924 Sapria himalayana HOM05D004216 ORTHO05D004926 6.9e-16 91.3 107 50.5
MD14G1221600 Malus domestica HOM05D004216 ORTHO05D004926 2.0e-15 89.7 47 76.6
SHI18929 Sapria himalayana HOM05D004216 ORTHO05D004926 1.7e-14 86.7 91 44.0
arahy.Tifrunner.gnm1.ann1.9R3CPH Arachis hypogaea HOM05D004216 ORTHO05D004926 4.2e-13 82.0 67 58.2
SHI18919 Sapria himalayana HOM05D004216 ORTHO05D004926 2.1e-12 79.7 110 49.1
Medtr4g113495 Medicago truncatula HOM05D004216 ORTHO05D004926 5.1e-11 75.1 80 53.8
SHI18925 Sapria himalayana HOM05D000023 ORTHO05D000014 1.1e-10 73.9 87 50.6
TWI60G0758 Tripterygium wilfordii HOM05D004216 ORTHO05D004926 1.9e-10 73.2 75 57.3
Lsat_1_v5_gn_4_156821 Lactuca sativa HOM05D001700 ORTHO05D013746 3.3e-10 72.4 61 59.0
MD14G1221500 Malus domestica HOM05D004216 ORTHO05D004926 4.3e-10 72.0 70 54.3
SHI18927 Sapria himalayana HOM05D004216 ORTHO05D004926 1.3e-09 70.5 36 86.1
Zm00001eb099350 Zea mays HOM05D004216 ORTHO05D004926 1.3e-09 70.5 47 72.3
Medtr4g113360 Medicago truncatula HOM05D004216 ORTHO05D004926 3.7e-09 68.9 67 58.2
Os09g0362500 Oryza sativa ssp. japonica HOM05D002132 ORTHO05D002168 5.3e-08 65.1 285 21.8
Os08g0398700 Oryza sativa ssp. japonica HOM05D002132 ORTHO05D002168 1.3e-06 60.5 289 21.5
unitig_0.g2556 Utricularia gibba HOM05D002132 ORTHO05D002168 1.3e-06 60.5 281 21.7
Hma1.2p1_1126F.1_g259655 Hydrangea macrophylla HOM05D002132 ORTHO05D002168 6.5e-06 58.2 292 21.2
Psat5g032480 Pisum sativum HOM05D002132 ORTHO05D002168 8.5e-06 57.8 295 22.7


User provided reference genes

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