Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.J00439 Erythranthe guttata HOM05D004177 ORTHO05D004826 1.9e-220 768.8 375 100.0
SalBow6G4427 Salvia bowleyana HOM05D004177 ORTHO05D004826 2.5e-193 678.7 368 88.6
MSTRG.19533 Avicennia marina HOM05D004177 ORTHO05D004826 1.5e-190 669.5 371 87.3
SGA_v2.0_scaffold62G21577 Striga asiatica HOM05D004177 ORTHO05D004826 1.9e-188 662.5 359 87.2
Actinidia29891 Actinidia chinensis HOM05D004177 ORTHO05D004826 7.7e-182 640.6 369 83.5
Actinidia25277 Actinidia chinensis HOM05D004177 ORTHO05D004826 8.5e-181 637.1 366 82.2
vmacro00113 Vaccinium macrocarpon HOM05D004177 ORTHO05D004826 8.5e-181 637.1 367 83.7
PGR142G0935 Punica granatum HOM05D004177 ORTHO05D004826 1.4e-180 636.3 364 83.0
Dinv36734 Davidia involucrata HOM05D004177 ORTHO05D004826 1.9e-180 636.0 360 83.9
Solyc02g080800.4 Solanum lycopersicum HOM05D004177 ORTHO05D004826 1.2e-179 633.3 369 81.6
VMungo0464G2175 Vigna mungo HOM05D004177 ORTHO05D004826 1.2e-179 633.3 349 85.4
arahy.Tifrunner.gnm1.ann1.H1EJ8W Arachis hypogaea HOM05D004177 ORTHO05D004826 2.7e-179 632.1 360 82.5
arahy.Tifrunner.gnm1.ann1.TIR1N2 Arachis hypogaea HOM05D004177 ORTHO05D004826 2.7e-179 632.1 360 82.5
Lsat_1_v5_gn_8_88081 Lactuca sativa HOM05D004177 ORTHO05D004826 7.9e-179 630.6 363 82.1
Sopen02g025490 Solanum pennellii HOM05D004177 ORTHO05D004826 7.9e-179 630.6 369 81.3
Hma1.2p1_1074F.1_g254310 Hydrangea macrophylla HOM05D004177 ORTHO05D004826 1.4e-178 629.8 361 83.7
Sc14g0000820 Simmondsia chinensis HOM05D004177 ORTHO05D004826 1.4e-178 629.8 359 84.1
Phvul.004G172700 Phaseolus vulgaris HOM05D004177 ORTHO05D004826 2.3e-178 629.0 349 84.8
Hma1.2p1_0663F.1_g198701 Hydrangea macrophylla HOM05D004177 ORTHO05D004826 5.1e-178 627.9 354 83.3
Potri.003G186900 Populus trichocarpa HOM05D004177 ORTHO05D004826 6.7e-178 627.5 354 83.6
AUR62007842 Chenopodium quinoa HOM05D004177 ORTHO05D004826 8.8e-178 627.1 355 83.4
Eucgr.C00926 Eucalyptus grandis HOM05D004177 ORTHO05D004826 1.1e-177 626.7 362 80.9
Glyma.07G127600 Glycine max HOM05D004177 ORTHO05D004826 1.1e-177 626.7 362 82.6
Psat7g081120 Pisum sativum HOM05D004177 ORTHO05D004826 1.1e-177 626.7 353 83.6
QL02p063435 Quercus lobata HOM05D004177 ORTHO05D004826 1.1e-177 626.7 362 81.5
Rhsim03G0234600 Rhododendron simsii HOM05D004177 ORTHO05D004826 1.5e-177 626.3 369 82.9
AUR62003036 Chenopodium quinoa HOM05D004177 ORTHO05D004826 2.0e-177 625.9 355 83.4
HanXRQChr09g0263461 Helianthus annuus HOM05D004177 ORTHO05D004826 2.0e-177 625.9 354 83.1
Manes.15G104600 Manihot esculenta HOM05D004177 ORTHO05D004826 2.0e-177 625.9 357 82.4
Nn6g35409 Nelumbo nucifera HOM05D004177 ORTHO05D004826 3.3e-177 625.2 356 82.0
Sabra03G0136900 Salix brachista HOM05D004177 ORTHO05D004826 5.7e-177 624.4 354 83.1
Ca_18171_v3 Cicer arietinum L. HOM05D004177 ORTHO05D004826 7.4e-177 624.0 349 83.4
TWI09G1015 Tripterygium wilfordii HOM05D004177 ORTHO05D004826 1.7e-176 622.9 349 83.7
Ciclev10008698m.g Citrus clementina HOM05D004177 ORTHO05D004826 2.8e-176 622.1 353 83.6
Cfa003130 Carpinus fangiana HOM05D004177 ORTHO05D004826 3.7e-176 621.7 360 81.4
Duzib114G0142 Durio zibethinus HOM05D004177 ORTHO05D004826 3.7e-176 621.7 352 82.4
GSVIVG01008468001 Vitis vinifera HOM05D004177 ORTHO05D004826 3.7e-176 621.7 353 83.6
CiPaw.03G219400 Carya illinoinensis HOM05D004177 ORTHO05D004826 6.3e-176 620.9 360 80.6
Nitab4.5_0002695g0050 Nicotiana tabacum HOM05D004177 ORTHO05D004826 8.2e-176 620.5 381 79.0
Aqoxy2G03855 Aquilegia oxysepala HOM05D004177 ORTHO05D004826 1.1e-175 620.2 367 81.2
TPR.G38463 Trifolium pratense HOM05D004177 ORTHO05D004826 1.1e-175 620.2 353 82.4
THA.LOC104816571 Tarenaya hassleriana HOM05D004177 ORTHO05D004826 2.4e-175 619.0 355 81.1
Thecc.10G003500 Theobroma cacao HOM05D004177 ORTHO05D004826 2.4e-175 619.0 357 81.2
Cc06_g10990 Coffea canephora HOM05D004177 ORTHO05D004826 5.3e-175 617.8 361 81.4
TAR636G0014 Trochodendron aralioides HOM05D004177 ORTHO05D004826 5.3e-175 617.8 369 80.8
Ah.09g228420 Amaranthus hybridus HOM05D004177 ORTHO05D004826 6.9e-175 617.5 353 82.2
ECA233G2252 Erigeron canadensis HOM05D004177 ORTHO05D004826 6.9e-175 617.5 356 80.6
Atru.chr7.1532 Acer truncatum HOM05D004177 ORTHO05D004826 9.1e-175 617.1 351 82.6
Nitab4.5_0007963g0020 Nicotiana tabacum HOM05D004177 ORTHO05D004826 9.1e-175 617.1 389 76.9
BcaC06g32302 Brassica carinata HOM05D004177 ORTHO05D004826 1.5e-174 616.3 354 81.9
C09p70810 Brassica napus HOM05D004177 ORTHO05D004826 1.5e-174 616.3 354 81.9
CAN.G1014.11 Capsicum annuum HOM05D004177 ORTHO05D004826 3.4e-174 615.1 365 80.3
MELO3C005126.2 Cucumis melo HOM05D004177 ORTHO05D004826 5.9e-174 614.4 358 79.6
ECA236G1557 Erigeron canadensis HOM05D004177 ORTHO05D004826 7.7e-174 614.0 366 78.7
Lsat_1_v5_gn_8_88021 Lactuca sativa HOM05D004177 ORTHO05D004826 7.7e-174 614.0 365 79.2
Gohir.D10G201600 Gossypium hirsutum HOM05D004177 ORTHO05D004826 1.3e-173 613.2 352 81.5
AUR62027470 Chenopodium quinoa HOM05D004177 ORTHO05D004826 1.7e-173 612.8 351 82.3
THA.LOC104826863 Tarenaya hassleriana HOM05D004177 ORTHO05D004826 2.2e-173 612.5 358 80.2
CsaV3_5G024780 Cucumis sativus L. HOM05D004177 ORTHO05D004826 3.8e-173 611.7 362 78.5
Thhalv10013870m.g Eutrema salsugineum HOM05D004177 ORTHO05D004826 3.8e-173 611.7 355 80.6
MBI04_g06223_MAGBIO Magnolia biondii HOM05D004177 ORTHO05D004826 3.8e-173 611.7 380 77.9
MD15G1202800 Malus domestica HOM05D004177 ORTHO05D004826 3.8e-173 611.7 355 81.1
Gorai.011G226300 Gossypium raimondii HOM05D004177 ORTHO05D004826 5.0e-173 611.3 359 80.2
Sp6g36980 Schrenkiella parvula HOM05D004177 ORTHO05D004826 1.1e-172 610.1 355 80.6
Aa31LG11G6950 Aethionema arabicum HOM05D004177 ORTHO05D004826 1.9e-172 609.4 357 80.4
AL6G15840 Arabidopsis lyrata HOM05D004177 ORTHO05D004826 1.9e-172 609.4 355 80.3
A10p30370 Brassica napus HOM05D004177 ORTHO05D004826 1.9e-172 609.4 353 81.9
Lj1g0019759 Lotus japonicus HOM05D004177 ORTHO05D004826 2.5e-172 609.0 364 79.7
Oeu052128.1 Olea europaea HOM05D004177 ORTHO05D004826 4.2e-172 608.2 346 84.4
CiPaw.12G022300 Carya illinoinensis HOM05D004177 ORTHO05D004826 5.5e-172 607.8 364 79.7
AT5G05920 Arabidopsis thaliana HOM05D004177 ORTHO05D004826 7.2e-172 607.4 355 80.0
CANSAT11G0575 Cannabis sativa HOM05D004177 ORTHO05D004826 6.1e-171 604.4 351 79.8
MD02G1073000 Malus domestica HOM05D004177 ORTHO05D004826 6.1e-171 604.4 355 80.0
Prupe.7G214500 Prunus persica HOM05D004177 ORTHO05D004826 7.9e-171 604.0 354 80.2
Carub.0006s0480 Capsella rubella HOM05D004177 ORTHO05D004826 1.0e-170 603.6 355 79.7
Lalb_Chr24g0393931 Lupinus albus HOM05D004177 ORTHO05D004826 1.4e-170 603.2 348 79.9
BraA10t45083Z Brassica rapa HOM05D004177 ORTHO05D004826 1.8e-170 602.8 375 77.6
ClCG01G007700 Citrullus lanatus HOM05D004177 ORTHO05D004826 3.0e-170 602.1 368 77.2
RcHm_v2.0_Chr2g0092611 Rosa chinensis HOM05D004177 ORTHO05D004826 3.0e-170 602.1 355 78.9
unitig_27.g24734 Utricularia gibba HOM05D001806 ORTHO05D004826 3.0e-170 602.1 342 84.8
Sed0022999 Sechium edule HOM05D004177 ORTHO05D004826 5.1e-170 601.3 358 78.5
BolC9t59847H Brassica oleracea HOM05D004177 ORTHO05D004826 8.8e-170 600.5 373 77.2
CSS0022162 Camellia sinensis var. sinensis HOM05D004177 ORTHO05D004826 1.5e-169 599.7 382 77.0
PSO210G7296 Papaver somniferum HOM05D004177 ORTHO05D004826 1.5e-169 599.7 366 76.8
PSO210G0074 Papaver somniferum HOM05D004177 ORTHO05D004826 3.3e-169 598.6 366 76.8
Gorai.011G226400 Gossypium raimondii HOM05D004177 ORTHO05D004826 5.7e-169 597.8 352 79.5
TPR.G9556 Trifolium pratense HOM05D004177 ORTHO05D004826 7.4e-169 597.4 355 80.6
Gohir.D10G201700 Gossypium hirsutum HOM05D004177 ORTHO05D004826 9.7e-169 597.0 352 79.5
HanXRQChr04g0112631 Helianthus annuus HOM05D004177 ORTHO05D004826 2.2e-168 595.9 369 77.0
FvH4_1g06830 Fragaria vesca HOM05D004177 ORTHO05D004826 3.7e-168 595.1 355 78.0
Ca_14076_v3 Cicer arietinum L. HOM05D004177 ORTHO05D004826 6.3e-168 594.3 349 80.8
SHI02807 Sapria himalayana HOM05D004177 ORTHO05D004826 8.2e-168 594.0 373 75.1
BcaB05g21688 Brassica carinata HOM05D004177 ORTHO05D004826 5.3e-167 591.3 355 78.9
Solyc02g080790.4 Solanum lycopersicum HOM05D004177 ORTHO05D004826 1.2e-166 590.1 361 77.0
BolC2t06219H Brassica oleracea HOM05D004177 ORTHO05D004826 2.0e-166 589.3 354 78.8
Sopen02g025480 Solanum pennellii HOM05D004177 ORTHO05D004826 4.5e-166 588.2 359 77.2
FAN28G1160 Fragaria x ananassa HOM05D004177 ORTHO05D004826 1.0e-165 587.0 367 76.0
Gohir.A10G194600 Gossypium hirsutum HOM05D004177 ORTHO05D004826 1.7e-165 586.3 352 78.7
DCAR_012005 Daucus carota HOM05D004177 ORTHO05D004826 6.5e-165 584.3 352 78.1
HPP92_011031 Vanilla planifolia HOM05D004177 ORTHO05D004826 6.1e-163 577.8 361 77.0
BraA02t04865Z Brassica rapa HOM05D004177 ORTHO05D004826 1.0e-162 577.0 361 77.3
ATR0789G091 Amborella trichopoda HOM05D004177 ORTHO05D004826 8.8e-162 573.9 369 75.3
FAN26G2529 Fragaria x ananassa HOM05D004177 ORTHO05D004826 1.7e-160 569.7 366 74.3
EL10Ac6g14643 Beta vulgaris HOM05D004177 ORTHO05D004826 2.8e-160 568.9 351 77.8
Os03g0740600 Oryza sativa ssp. japonica HOM05D004177 ORTHO05D004826 1.0e-157 560.5 351 75.8
SEGI_08410 Sequoiadendron giganteum HOM05D004177 ORTHO05D004826 1.7e-157 559.7 350 76.6
PSO596G0001 Papaver somniferum HOM05D004177 ORTHO05D004826 3.8e-157 558.5 353 73.9
Haze_25874 Corylus avellana HOM05D004177 ORTHO05D004826 1.1e-156 557.0 381 70.3
Cpa.g.sc19.251 Carica papaya HOM05D004177 ORTHO05D004826 3.2e-156 555.4 361 75.6
HPP92_001732 Vanilla planifolia HOM05D004177 ORTHO05D004826 8.0e-155 550.8 373 69.4
COL.COLO4_19342 Corchorus olitorius HOM05D004177 ORTHO05D004826 4.0e-154 548.5 357 75.1
HPP92_014582 Vanilla planifolia HOM05D004177 ORTHO05D004826 7.5e-153 544.3 362 70.2
vmacro06273 Vaccinium macrocarpon HOM05D004177 ORTHO05D004826 1.3e-152 543.5 436 63.8
Zm00001eb085620 Zea mays HOM05D004177 ORTHO05D004826 3.7e-152 542.0 378 69.8
Zm00001eb215220 Zea mays HOM05D004177 ORTHO05D004826 2.4e-151 539.3 351 74.4
Mapoly0001s0219 Marchantia polymorpha HOM05D004177 ORTHO05D004826 4.1e-151 538.5 359 68.5
SMO337G0022 Selaginella moellendorffii HOM05D004177 ORTHO05D004826 5.3e-151 538.1 348 72.1
Pp3c2_9490 Physcomitrium patens HOM05D004177 ORTHO05D004826 1.6e-150 536.6 351 70.9
AUR62031232 Chenopodium quinoa HOM05D004177 ORTHO05D004826 2.7e-150 535.8 359 72.4
CARHR207300 Cardamine hirsuta HOM05D004177 ORTHO05D004826 5.9e-150 534.6 296 84.1
Gohir.A10G194500 Gossypium hirsutum HOM05D004177 ORTHO05D004826 2.2e-149 532.7 359 73.0
AagrBONN_evm.TU.Sc2ySwM_344.1392 Anthoceros agrestis HOM05D004177 ORTHO05D004826 8.5e-149 530.8 328 73.5
FAN19G3030 Fragaria x ananassa HOM05D004177 ORTHO05D004826 6.1e-147 524.6 355 71.3
FAN23G1990 Fragaria x ananassa HOM05D004177 ORTHO05D004826 5.2e-146 521.5 355 70.1
TWI12G1142 Tripterygium wilfordii HOM05D004177 ORTHO05D004826 1.3e-144 516.9 284 85.2
FAN26G0736 Fragaria x ananassa HOM05D004177 ORTHO05D004826 5.0e-141 505.0 359 69.4
AagrBONN_evm.TU.Sc2ySwM_344.3440 Anthoceros agrestis HOM05D004177 ORTHO05D004826 9.5e-140 500.7 381 63.3
MELO3C025268.2 Cucumis melo HOM05D004177 ORTHO05D004826 5.2e-138 495.0 363 67.2
HPP92_016636 Vanilla planifolia HOM05D004177 ORTHO05D004826 5.2e-138 495.0 296 78.7
Peaxi162Scf00178g01719 Petunia axillaris HOM05D004177 ORTHO05D004826 3.9e-133 478.8 719 41.2
MCO16G096 Micromonas commoda HOM05D004177 ORTHO05D004826 1.2e-131 473.8 351 63.2
PRCOL_00001978 Prasinoderma coloniale HOM05D004177 ORTHO05D004826 3.6e-131 472.2 350 63.7
Dinv42291 Davidia involucrata HOM05D004177 ORTHO05D004826 4.4e-129 465.3 247 88.7
CDE04G2922 Ceratophyllum demersum HOM05D004177 ORTHO05D004826 1.3e-128 463.8 360 65.0
Cre01.g018950 Chlamydomonas reinhardtii HOM05D004177 ORTHO05D004826 9.5e-124 447.6 310 66.5
Cre08.g369800 Chlamydomonas reinhardtii HOM05D004177 ORTHO05D004826 2.6e-121 439.5 330 60.6
SGA_v2.0_scaffold439G51649 Striga asiatica HOM05D004177 ORTHO05D004826 3.7e-112 409.1 227 85.5
Haze_27186 Corylus avellana HOM05D004177 ORTHO05D004826 5.4e-111 405.2 363 54.3
Sed0017389 Sechium edule HOM05D004177 ORTHO05D004826 3.1e-106 389.4 259 69.1
Nn4g24829 Nelumbo nucifera HOM05D004177 ORTHO05D004826 8.9e-106 387.9 244 74.2
Os09g0421100 Oryza sativa ssp. japonica HOM05D004177 ORTHO05D004826 6.0e-102 375.2 331 58.9
CBR_g31495 Chara braunii HOM05D004177 ORTHO05D004826 7.6e-97 358.2 251 67.3
AagrBONN_evm.TU.Sc2ySwM_362.473 Anthoceros agrestis HOM05D004177 ORTHO05D004826 2.1e-94 350.1 328 54.9
SGA_v2.0_scaffold439G51638 Striga asiatica HOM05D004177 ORTHO05D004826 6.0e-86 322.0 202 77.2
Hund18418 Selenicereus undatus HOM05D004177 ORTHO05D004826 2.1e-83 313.5 291 56.7
CAN.G744.9 Capsicum annuum HOM05D004177 ORTHO05D004826 1.4e-53 214.5 131 77.1
Oeu062209.1 Olea europaea HOM05D004177 ORTHO05D004826 3.6e-46 189.9 135 74.8
HanXRQChr04g0126441 Helianthus annuus HOM05D004177 ORTHO05D004826 4.7e-46 189.5 100 90.0
Oeu062208.1 Olea europaea HOM05D004177 ORTHO05D004826 4.7e-46 189.5 135 74.1
Oeu062213.1 Olea europaea HOM05D004177 ORTHO05D004826 1.8e-45 187.6 135 73.3
HanXRQChr13g0409461 Helianthus annuus HOM05D004177 ORTHO05D004826 2.3e-45 187.2 122 77.9
Oeu062211.1 Olea europaea HOM05D004177 ORTHO05D004826 4.8e-43 179.5 134 70.9
AagrBONN_evm.TU.Sc2ySwM_117.1724 Anthoceros agrestis HOM05D004177 ORTHO05D004826 5.3e-42 176.0 171 50.9
Actinidia03786 Actinidia chinensis HOM05D004177 ORTHO05D004826 1.6e-41 174.5 103 85.4
HPP92_016662 Vanilla planifolia HOM05D004177 ORTHO05D004826 4.0e-37 159.8 98 74.5
Hund18419 Selenicereus undatus HOM05D004177 ORTHO05D004826 6.8e-37 159.1 106 70.8
Aa31sc206G30 Aethionema arabicum HOM05D005780 ORTHO05D004826 7.7e-33 145.6 128 59.4
C02p02540 Brassica napus HOM05D001260 ORTHO05D002424 1.3e-32 144.8 120 60.8
HPP92_016663 Vanilla planifolia HOM05D004177 ORTHO05D004826 2.1e-30 137.5 108 63.9
Oeu039826.4 Olea europaea HOM05D002851 ORTHO05D003084 7.7e-25 119.0 69 84.1
Actinidia39745 Actinidia chinensis HOM05D004177 ORTHO05D004826 1.1e-23 115.2 71 77.5
Oeu056107.1 Olea europaea HOM05D004177 ORTHO05D004826 1.1e-23 115.2 81 71.6
RcHm_v2.0_Chr6g0296851 Rosa chinensis HOM05D004177 ORTHO05D004826 1.9e-23 114.4 69 81.2
Peaxi162Scf00287g00176 Petunia axillaris HOM05D004177 ORTHO05D004826 4.6e-17 93.2 84 57.1
CDE02G3953 Ceratophyllum demersum HOM05D004177 ORTHO05D004826 7.8e-17 92.4 71 63.4
Nn4g24830 Nelumbo nucifera HOM05D004177 ORTHO05D004826 1.4e-13 81.6 127 42.5
AUR62030112 Chenopodium quinoa HOM05D004177 ORTHO05D004826 1.8e-13 81.3 56 69.6
Pp3c1_32420 Physcomitrium patens HOM05D004177 ORTHO05D004826 2.6e-12 77.4 49 67.3
HanXRQChr13g0409471 Helianthus annuus HOM05D004177 ORTHO05D004826 4.1e-10 70.1 71 50.7
Medtr8g079080 Medicago truncatula HOM05D004177 ORTHO05D004826 1.9e-07 61.2 41 70.7
VMungo0647G1164 Vigna mungo HOM05D004177 ORTHO05D004826 9.5e-07 58.9 34 79.4


User provided reference genes

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