Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.J00228 Erythranthe guttata HOM05D001476 ORTHO05D006149 0.0e+00 1706.4 864 100.0
SalBow5G4659 Salvia bowleyana HOM05D001476 ORTHO05D006149 0.0e+00 1394.0 935 78.3
SGA_v2.0_scaffold22G09908 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1384.8 874 81.6
SGA_v2.0_scaffold85G26765 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1358.6 874 80.9
Dinv35515 Davidia involucrata HOM05D001476 ORTHO05D006149 0.0e+00 1323.5 874 79.1
CSS0024803 Camellia sinensis var. sinensis HOM05D001476 ORTHO05D006149 0.0e+00 1308.9 883 76.6
Actinidia13780 Actinidia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1308.1 874 77.6
Hma1.2p1_0763F.1_g214610 Hydrangea macrophylla HOM05D001476 ORTHO05D006149 0.0e+00 1302.0 884 76.4
Cc06_g01690 Coffea canephora HOM05D001476 ORTHO05D006149 0.0e+00 1283.1 880 73.8
PGR031G2805 Punica granatum HOM05D001476 ORTHO05D006149 0.0e+00 1280.0 880 75.2
Nitab4.5_0011723g0020 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1278.8 879 75.8
Nitab4.5_0000008g0700 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1275.8 879 75.7
Oeu004614.2 Olea europaea HOM05D001476 ORTHO05D006149 0.0e+00 1265.4 874 76.1
Nitab4.5_0004912g0100 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1262.3 872 75.1
Sopen10g034520 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1260.7 874 74.7
GSVIVG01034014001 Vitis vinifera HOM05D001476 ORTHO05D006149 0.0e+00 1260.4 868 74.8
TAR402G0001 Trochodendron aralioides HOM05D001476 ORTHO05D006149 0.0e+00 1259.2 876 74.5
Nn2g13602 Nelumbo nucifera HOM05D001476 ORTHO05D006149 0.0e+00 1251.1 873 74.2
Ciclev10011050m.g Citrus clementina HOM05D001476 ORTHO05D006149 0.0e+00 1247.6 862 74.4
Peaxi162Scf00141g00813 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1247.3 821 77.3
Cpa.g.sc56.111 Carica papaya HOM05D001476 ORTHO05D006149 0.0e+00 1246.5 875 73.3
Thecc.05G022500 Theobroma cacao HOM05D001476 ORTHO05D006149 0.0e+00 1241.9 880 73.3
TWI74G1595 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1240.7 877 73.5
Aqoxy1G00720 Aquilegia oxysepala HOM05D001476 ORTHO05D006149 0.0e+00 1239.9 876 73.7
PGSC0003DMG400011017 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1239.6 874 74.1
Manes.09G101900 Manihot esculenta HOM05D001476 ORTHO05D006149 0.0e+00 1238.8 868 73.5
Solyc09g013130.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 0.0e+00 1238.8 905 71.9
Duzib128G0639 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1238.4 867 73.5
Gohir.A09G163100 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1238.4 866 73.8
Potri.006G096100 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1238.0 885 73.1
TWI77G0827 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1238.0 887 72.8
CAN.G355.19 Capsicum annuum HOM05D001476 ORTHO05D006149 0.0e+00 1237.2 883 73.2
Gorai.006G180300 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1237.2 884 72.3
Peaxi162Scf00009g02022 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1235.3 876 73.3
Gohir.D09G158600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1234.9 870 73.0
Potri.016G110800 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1234.9 888 72.2
ECA236G3430 Erigeron canadensis HOM05D001476 ORTHO05D006149 0.0e+00 1234.6 837 74.6
Rhsim05G0205700 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1233.0 879 72.8
Eucgr.B02781 Eucalyptus grandis HOM05D001476 ORTHO05D006149 0.0e+00 1231.9 890 72.4
Prupe.6G270500 Prunus persica HOM05D001476 ORTHO05D006149 0.0e+00 1231.9 878 73.9
MELO3C003223.2 Cucumis melo HOM05D001476 ORTHO05D006149 0.0e+00 1230.7 875 72.6
DCAR_024038 Daucus carota HOM05D001476 ORTHO05D006149 0.0e+00 1230.3 856 74.5
Sopen09g006990 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1228.8 903 71.8
Thhalv10020022m.g Eutrema salsugineum HOM05D001476 ORTHO05D006149 0.0e+00 1228.0 878 72.2
CsaV3_4G025980 Cucumis sativus L. HOM05D001476 ORTHO05D006149 0.0e+00 1227.6 878 72.1
ClCG04G007260 Citrullus lanatus HOM05D001476 ORTHO05D006149 0.0e+00 1226.1 875 72.5
Lj3g0014893 Lotus japonicus HOM05D001476 ORTHO05D006149 0.0e+00 1225.7 872 72.6
PSO832G0213 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1222.6 882 73.4
PSO210G1670 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1222.2 880 73.0
FvH4_6g12060 Fragaria vesca HOM05D001476 ORTHO05D006149 0.0e+00 1220.7 884 73.0
Sc24g0002110 Simmondsia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1219.9 909 70.0
Sed0003764 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1218.4 866 73.1
Gorai.012G111700 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1217.6 864 72.3
THA.LOC104816221 Tarenaya hassleriana HOM05D001476 ORTHO05D006149 0.0e+00 1217.6 928 69.1
Sp3g07550 Schrenkiella parvula HOM05D001476 ORTHO05D006149 0.0e+00 1217.2 893 71.3
AT3G09090 Arabidopsis thaliana HOM05D001476 ORTHO05D006149 0.0e+00 1215.7 885 71.8
Nitab4.5_0000652g0160 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1214.9 832 75.5
CARHR083470 Cardamine hirsuta HOM05D001476 ORTHO05D006149 0.0e+00 1213.0 880 71.4
Carub.0003s0826 Capsella rubella HOM05D001476 ORTHO05D006149 0.0e+00 1212.6 883 71.5
unitig_699.g19385 Utricularia gibba HOM05D001476 ORTHO05D006149 0.0e+00 1211.1 867 73.1
HanXRQChr16g0507821 Helianthus annuus HOM05D001476 ORTHO05D006149 0.0e+00 1210.7 885 71.3
BolC1t05473H Brassica oleracea HOM05D001476 ORTHO05D006149 0.0e+00 1206.4 899 69.6
CANSAT35G0098 Cannabis sativa HOM05D001476 ORTHO05D006149 0.0e+00 1206.4 893 70.1
Gohir.D04G128600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1205.3 865 72.0
BcaC09g48009 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1204.9 880 71.4
AL3G20170 Arabidopsis lyrata HOM05D001476 ORTHO05D006149 0.0e+00 1204.1 889 70.6
Atru.chr8.2151 Acer truncatum HOM05D001476 ORTHO05D006149 0.0e+00 1202.6 911 68.6
Haze_20947 Corylus avellana HOM05D001476 ORTHO05D006149 0.0e+00 1199.9 915 69.3
Ca_23816_v3 Cicer arietinum L. HOM05D001476 ORTHO05D006149 0.0e+00 1196.0 874 70.1
Glyma.01G111300 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1190.6 885 69.9
A05p39780 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1188.7 881 70.6
FAN05G2912 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1185.2 884 71.6
Lj3A957T35 Lonicera japonica HOM05D001476 ORTHO05D006149 0.0e+00 1182.5 955 67.2
Medtr4g014960 Medicago truncatula HOM05D001476 ORTHO05D006149 0.0e+00 1182.2 890 68.7
Sed0007041 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1182.2 929 67.0
EL10Ac5g11563 Beta vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1181.0 930 67.7
CiPaw.09G205700 Carya illinoinensis HOM05D001476 ORTHO05D006149 0.0e+00 1179.5 890 70.4
C05p58820 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1179.1 881 70.3
BcaC09g48054 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1178.3 908 68.3
Glyma.03G076900 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1178.3 890 69.6
BraA01t04314Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1177.2 886 70.1
FAN14G1008 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1176.8 899 70.5
FAN09G2729 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1176.0 899 70.3
FAN14G2619 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1175.6 899 70.4
PGSC0003DMG400020350 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1175.2 1014 63.4
BraA05t22762Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1174.1 901 68.7
FAN02G1993 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1174.1 884 71.3
Rhsim05G0205800 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1172.9 921 66.6
Aa31LG3G1620 Aethionema arabicum HOM05D001476 ORTHO05D006149 0.0e+00 1171.4 910 67.9
VMungo0331G0441 Vigna mungo HOM05D001476 ORTHO05D006149 0.0e+00 1170.6 898 67.9
Psat0s2261g0240 Pisum sativum HOM05D001476 ORTHO05D006149 0.0e+00 1166.8 892 69.3
MD04G1146700 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1165.2 874 71.2
Lsat_1_v5_gn_8_99901 Lactuca sativa HOM05D001476 ORTHO05D006149 0.0e+00 1164.8 816 72.8
HPP92_018041 Vanilla planifolia HOM05D001476 ORTHO05D006149 0.0e+00 1157.9 885 67.2
TPR.G5272 Trifolium pratense HOM05D001476 ORTHO05D006149 0.0e+00 1157.5 883 68.6
MD12G1159900 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1154.0 894 69.7
Phvul.010G008300 Phaseolus vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1153.7 925 65.3
CDE04G3748 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 0.0e+00 1151.3 868 69.7
ATR0618G171 Amborella trichopoda HOM05D001476 ORTHO05D006149 0.0e+00 1143.6 830 71.3
Oeu044363.1 Olea europaea HOM05D001476 ORTHO05D006149 0.0e+00 1140.6 877 68.8
Lalb_Chr07g0193321 Lupinus albus HOM05D001476 ORTHO05D006149 0.0e+00 1128.6 949 64.0
BcaC05g29640 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1127.1 903 66.9
arahy.Tifrunner.gnm1.ann1.5UT5JQ Arachis hypogaea HOM05D001476 ORTHO05D006149 0.0e+00 1124.0 909 66.2
arahy.Tifrunner.gnm1.ann1.VBIR99 Arachis hypogaea HOM05D001476 ORTHO05D006149 0.0e+00 1122.1 909 66.2
MSTRG.5600 Avicennia marina HOM05D001476 ORTHO05D006149 0.0e+00 1119.8 697 83.5
Zm00001eb063130 Zea mays HOM05D001476 ORTHO05D006149 0.0e+00 1110.5 865 66.2
vmacro20235 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 0.0e+00 1109.7 828 69.1
Cfa017258 Carpinus fangiana HOM05D001476 ORTHO05D002681 0.0e+00 1107.0 859 68.2
Os03g0825700 Oryza sativa ssp. japonica HOM05D001476 ORTHO05D006149 0.0e+00 1106.3 845 67.9
Duzib106G0695 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1102.4 866 65.4
CDE03G0023 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 2.9e-309 1065.1 872 63.1
Gohir.A04G088225 Gossypium hirsutum HOM05D001476 ORTHO05D006149 1.1e-308 1063.1 763 70.2
Solyc10g085060.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 4.8e-304 1047.7 721 73.9
Ah.11g045320 Amaranthus hybridus HOM05D001476 ORTHO05D006149 1.9e-292 1009.2 907 62.1
Lsat_1_v5_gn_0_44361 Lactuca sativa HOM05D001476 ORTHO05D006149 4.6e-291 1004.6 707 70.4
RcHm_v2.0_Chr3g0463911 Rosa chinensis HOM05D001476 ORTHO05D006149 1.6e-278 963.0 710 73.1
CAN.G1297.2 Capsicum annuum HOM05D001476 ORTHO05D006149 1.0e-277 960.3 613 77.7
Pp3c20_710 Physcomitrium patens HOM05D001476 ORTHO05D006149 1.1e-271 940.3 841 56.8
Sabra06G0073800 Salix brachista HOM05D001476 ORTHO05D002681 6.5e-269 931.0 869 60.5
Mapoly0103s0063 Marchantia polymorpha HOM05D001476 ORTHO05D006149 4.4e-265 918.3 879 55.2
Sabra16G0107400 Salix brachista HOM05D001476 ORTHO05D006149 4.1e-263 911.8 962 55.2
TAR636G2437 Trochodendron aralioides HOM05D001476 ORTHO05D006149 1.9e-260 902.9 515 83.5
SMO145G0033 Selaginella moellendorffii HOM05D001476 ORTHO05D006149 2.7e-254 882.5 864 54.9
SEGI_02222 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 1.1e-247 860.5 687 64.8
AagrBONN_evm.TU.Sc2ySwM_369.563 Anthoceros agrestis HOM05D001476 ORTHO05D006149 1.3e-192 677.6 621 60.2
AUR62043525 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.9e-175 620.5 394 75.1
TPR.G6686 Trifolium pratense HOM05D001476 ORTHO05D006149 3.6e-174 616.3 381 76.6
SHI12782 Sapria himalayana HOM05D001476 ORTHO05D006149 4.8e-171 605.9 524 65.6
COL.COLO4_14599 Corchorus olitorius HOM05D001476 ORTHO05D006149 9.1e-170 601.7 362 79.8
AUR62044509 Chenopodium quinoa HOM05D001476 ORTHO05D006149 5.9e-169 599.0 351 79.5
AUR62043103 Chenopodium quinoa HOM05D001476 ORTHO05D006149 6.7e-165 585.5 371 74.9
vmacro17486 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 7.0e-162 575.5 453 66.9
AUR62043102 Chenopodium quinoa HOM05D001476 ORTHO05D006149 4.2e-159 566.2 526 62.4
CBR_g8542 Chara braunii HOM05D001476 ORTHO05D006149 1.0e-144 518.5 694 45.8
MCO10G178 Micromonas commoda HOM05D001476 ORTHO05D006149 2.0e-140 504.2 857 38.5
Cre04.g214097 Chlamydomonas reinhardtii HOM05D001476 ORTHO05D006149 1.3e-136 491.5 1024 35.4
SHI12784 Sapria himalayana HOM05D001476 ORTHO05D006149 1.1e-125 455.3 315 70.5
BcaC09g47968 Brassica carinata HOM05D001476 ORTHO05D006149 1.7e-112 411.4 293 70.0
COL.COLO4_14600 Corchorus olitorius HOM05D001476 ORTHO05D006149 1.9e-111 407.9 480 53.5
AUR62043524 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.4e-109 401.7 442 55.9
PRCOL_00002974 Prasinoderma coloniale HOM05D001476 ORTHO05D006149 4.0e-101 373.6 1033 29.8
Actinidia29132 Actinidia chinensis HOM05D001476 ORTHO05D006149 6.6e-96 356.3 579 40.2
TAR636G0462 Trochodendron aralioides HOM05D001476 ORTHO05D006149 3.9e-80 303.9 351 57.8
RcHm_v2.0_Chr3g0463901 Rosa chinensis HOM05D001476 ORTHO05D006149 2.7e-73 281.2 168 79.2
Dinv37085 Davidia involucrata HOM05D001476 ORTHO05D002681 1.5e-55 222.2 337 42.7
MSTRG.19033 Avicennia marina HOM05D001476 ORTHO05D031643 4.8e-46 190.7 116 82.8
Hund31411 Selenicereus undatus HOM05D001476 ORTHO05D006149 9.1e-45 186.4 104 85.6
BolC5t34534H Brassica oleracea HOM05D001476 ORTHO05D002681 2.2e-43 181.8 123 82.9
vmacro17485 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 3.7e-38 164.5 106 75.5
SEGI_09667 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 1.1e-34 152.9 113 61.9
Rhsim09G0090000 Rhododendron simsii HOM05D001476 ORTHO05D034934 2.4e-21 108.6 77 68.8
FAN23G1187 Fragaria x ananassa HOM05D001476 ORTHO05D031643 4.5e-20 104.4 76 68.4
TAR629G0215 Trochodendron aralioides HOM05D000393 ORTHO05D000275 6.6e-19 100.5 61 72.1
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 8.3e-14 83.6 88 52.3
TAR381G0471 Trochodendron aralioides HOM05D000141 ORTHO05D000780 8.3e-14 83.6 98 55.1
TAR626G1231 Trochodendron aralioides HOM05D000393 ORTHO05D000275 7.0e-13 80.5 57 63.2
FAN19G0609 Fragaria x ananassa HOM05D014108 ORTHO05D015280 2.0e-12 79.0 84 52.4
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 2.7e-12 78.6 45 75.6
TAR636G0366 Trochodendron aralioides HOM05D001476 ORTHO05D006149 4.3e-10 71.2 53 69.8
GSVIVG01021923001 Vitis vinifera HOM05D001476 ORTHO05D006149 4.3e-10 71.2 66 50.0
Rhsim05G0112000 Rhododendron simsii HOM05D047264 ORTHO05D021376 1.2e-09 69.7 58 60.3
MELO3C011527.2 Cucumis melo HOM05D001476 ORTHO05D034934 3.6e-09 68.2 41 70.7
Rhsim06G0121600 Rhododendron simsii HOM05D001476 ORTHO05D034934 2.0e-07 62.4 47 66.0
TWI53G1805 Tripterygium wilfordii HOM05D001476 ORTHO05D031643 3.4e-07 61.6 52 59.6


User provided reference genes

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