Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.I00890 Erythranthe guttata HOM05D005013 ORTHO05D006005 3.9e-290 1000.7 501 100.0
MSTRG.4752 Avicennia marina HOM05D005013 ORTHO05D006005 1.9e-66 257.7 541 35.5
SalBow7G4596 Salvia bowleyana HOM05D005013 ORTHO05D006005 1.4e-61 241.5 548 33.0
SGA_v2.0_scaffold4G02026 Striga asiatica HOM05D005013 ORTHO05D006005 6.9e-61 239.2 528 34.3
unitig_52.g17097 Utricularia gibba HOM05D005013 ORTHO05D006005 3.9e-56 223.4 515 32.0
Migut.D00991 Erythranthe guttata HOM05D005013 ORTHO05D006005 2.1e-54 217.6 501 31.9
Oeu026781.2 Olea europaea HOM05D005013 ORTHO05D006005 6.4e-51 206.1 522 31.0
Nitab4.5_0006467g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 2.4e-50 204.1 521 31.9
vmacro18853 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 7.1e-50 202.6 520 30.2
CSS0033602 Camellia sinensis var. sinensis HOM05D005013 ORTHO05D006005 1.2e-49 201.8 508 30.9
CAN.G1143.13 Capsicum annuum HOM05D005013 ORTHO05D006005 3.5e-49 200.3 516 30.8
Cc04_g02560 Coffea canephora HOM05D005013 ORTHO05D006005 6.0e-49 199.5 537 28.7
Glyma.08G201000 Glycine max HOM05D005013 ORTHO05D006005 1.8e-48 198.0 502 30.7
Peaxi162Scf00038g01028 Petunia axillaris HOM05D005013 ORTHO05D006005 2.3e-48 197.6 516 30.4
Solyc03g121020.3 Solanum lycopersicum HOM05D005013 ORTHO05D006005 6.7e-48 196.1 516 30.0
Sopen03g039850 Solanum pennellii HOM05D005013 ORTHO05D006005 1.1e-47 195.3 516 30.0
Lalb_Chr22g0351551 Lupinus albus HOM05D005013 ORTHO05D006005 1.9e-47 194.5 513 30.4
arahy.Tifrunner.gnm1.ann1.R367CR Arachis hypogaea HOM05D005013 ORTHO05D006005 2.5e-47 194.1 513 31.0
Hma1.2p1_1232F.1_g268910 Hydrangea macrophylla HOM05D005013 ORTHO05D006005 4.3e-47 193.4 522 30.3
Rhsim08G0227500 Rhododendron simsii HOM05D005013 ORTHO05D006005 5.6e-47 193.0 505 30.1
Lj3g0013010 Lotus japonicus HOM05D005013 ORTHO05D006005 9.6e-47 192.2 512 30.9
arahy.Tifrunner.gnm1.ann1.1M6YYJ Arachis hypogaea HOM05D005013 ORTHO05D006005 2.1e-46 191.0 513 30.6
Nn2g11173 Nelumbo nucifera HOM05D005013 ORTHO05D006005 2.8e-46 190.7 485 30.9
Glyma.07G015500 Glycine max HOM05D005013 ORTHO05D006005 4.8e-46 189.9 528 30.5
VMungo0331G0134 Vigna mungo HOM05D005013 ORTHO05D006005 4.8e-46 189.9 513 30.4
FAN05G1466 Fragaria x ananassa HOM05D005013 ORTHO05D006005 6.2e-46 189.5 521 30.3
FAN14G4508 Fragaria x ananassa HOM05D005013 ORTHO05D006005 8.1e-46 189.1 536 30.0
Phvul.010G145300 Phaseolus vulgaris HOM05D005013 ORTHO05D006005 8.1e-46 189.1 513 30.8
Actinidia32097 Actinidia chinensis HOM05D005013 ORTHO05D006005 1.1e-45 188.7 501 29.9
FvH4_6g32381 Fragaria vesca HOM05D005013 ORTHO05D006005 2.4e-45 187.6 536 29.9
RcHm_v2.0_Chr2g0140531 Rosa chinensis HOM05D005013 ORTHO05D006005 2.4e-45 187.6 536 29.7
Gohir.A09G081200 Gossypium hirsutum HOM05D005013 ORTHO05D006005 6.9e-45 186.0 513 30.0
DCAR_016188 Daucus carota HOM05D005013 ORTHO05D006005 9.0e-45 185.7 534 28.8
PGR102G0015 Punica granatum HOM05D005013 ORTHO05D006005 9.0e-45 185.7 524 30.5
FAN09G0199 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.2e-44 185.3 516 30.6
Lsat_1_v5_gn_4_97461 Lactuca sativa HOM05D005013 ORTHO05D006005 1.2e-44 185.3 539 28.0
HanXRQChr02g0032251 Helianthus annuus HOM05D005013 ORTHO05D006005 3.4e-44 183.7 518 29.0
Medtr8g014460 Medicago truncatula HOM05D005013 ORTHO05D006005 3.4e-44 183.7 503 30.4
GSVIVG01016983001 Vitis vinifera HOM05D005013 ORTHO05D006005 3.4e-44 183.7 516 30.0
CANSAT56G0983 Cannabis sativa HOM05D005013 ORTHO05D006005 4.5e-44 183.3 518 28.4
Gohir.D09G081300 Gossypium hirsutum HOM05D005013 ORTHO05D006005 4.5e-44 183.3 513 29.6
Nitab4.5_0006902g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 4.5e-44 183.3 293 39.6
Gorai.006G096900 Gossypium raimondii HOM05D005013 ORTHO05D006005 5.8e-44 183.0 513 29.6
TPR.G26938 Trifolium pratense HOM05D005013 ORTHO05D006005 7.6e-44 182.6 508 30.7
FAN02G3590 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.7e-43 181.4 536 29.5
Ca_23262_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 2.9e-43 180.6 513 30.2
Duzib235G0505 Durio zibethinus HOM05D005013 ORTHO05D006005 3.8e-43 180.3 518 29.7
MD09G1202900 Malus domestica HOM05D005013 ORTHO05D006005 4.9e-43 179.9 520 29.4
Duzib192G0488 Durio zibethinus HOM05D005013 ORTHO05D006005 6.5e-43 179.5 518 29.7
MD17G1184000 Malus domestica HOM05D005013 ORTHO05D006005 6.5e-43 179.5 515 29.3
Thecc.06G100000 Theobroma cacao HOM05D005013 ORTHO05D006005 6.5e-43 179.5 518 29.5
Atru.chr1.3523 Acer truncatum HOM05D005013 ORTHO05D006005 8.4e-43 179.1 506 28.9
COL.COLO4_30512 Corchorus olitorius HOM05D005013 ORTHO05D006005 8.4e-43 179.1 518 29.3
Lalb_Chr04g0262971 Lupinus albus HOM05D005013 ORTHO05D006005 8.4e-43 179.1 521 29.6
Carub.0002s2777 Capsella rubella HOM05D005013 ORTHO05D006005 1.1e-42 178.7 518 28.2
Psat2g107800 Pisum sativum HOM05D005013 ORTHO05D006005 1.4e-42 178.3 513 30.2
QL05p020046 Quercus lobata HOM05D005013 ORTHO05D006005 4.2e-42 176.8 531 28.6
Sabra01G0151600 Salix brachista HOM05D005013 ORTHO05D006005 4.2e-42 176.8 503 29.0
Lsat_1_v5_gn_1_36740 Lactuca sativa HOM05D005013 ORTHO05D006005 9.3e-42 175.6 291 37.5
TAR633G2449 Trochodendron aralioides HOM05D005013 ORTHO05D006005 1.2e-41 175.3 523 29.1
CsaV3_7G035280 Cucumis sativus L. HOM05D005013 ORTHO05D006005 2.1e-41 174.5 519 28.5
Gohir.A02G117400 Gossypium hirsutum HOM05D005013 ORTHO05D006005 2.1e-41 174.5 513 29.6
Lj9C512T10 Lonicera japonica HOM05D005013 ORTHO05D006005 2.7e-41 174.1 545 29.4
Aa31LG4G90 Aethionema arabicum HOM05D005013 ORTHO05D006005 3.5e-41 173.7 518 28.0
MELO3C024438.2 Cucumis melo HOM05D005013 ORTHO05D006005 3.5e-41 173.7 520 28.8
Gohir.D03G057900 Gossypium hirsutum HOM05D005013 ORTHO05D006005 3.5e-41 173.7 519 29.1
Ca_23271_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 4.6e-41 173.3 507 29.8
MBI04_g36817_MAGBIO Magnolia biondii HOM05D005013 ORTHO05D006005 4.6e-41 173.3 504 28.8
Prupe.1G178600 Prunus persica HOM05D005013 ORTHO05D006005 4.6e-41 173.3 521 29.8
arahy.Tifrunner.gnm1.ann1.VUMD9N Arachis hypogaea HOM05D005013 ORTHO05D006005 6.0e-41 172.9 320 36.2
Ciclev10025066m.g Citrus clementina HOM05D005013 ORTHO05D006005 7.9e-41 172.6 504 29.2
Gorai.003G061700 Gossypium raimondii HOM05D005013 ORTHO05D006005 7.9e-41 172.6 519 29.3
Potri.003G048900 Populus trichocarpa HOM05D005013 ORTHO05D006005 7.9e-41 172.6 494 28.7
Hund07600 Selenicereus undatus HOM05D005013 ORTHO05D006005 7.9e-41 172.6 503 28.4
Manes.04G134200 Manihot esculenta HOM05D005013 ORTHO05D006005 1.0e-40 172.2 503 29.8
ECA247G2560 Erigeron canadensis HOM05D005013 ORTHO05D006005 1.3e-40 171.8 518 28.4
THA.LOC104819998 Tarenaya hassleriana HOM05D005013 ORTHO05D006005 1.3e-40 171.8 503 28.2
Prupe.3G059100 Prunus persica HOM05D005013 ORTHO05D006005 1.8e-40 171.4 521 29.4
Eucgr.F03078 Eucalyptus grandis HOM05D005013 ORTHO05D006005 2.3e-40 171.0 505 29.7
AT1G79730 Arabidopsis thaliana HOM05D005013 ORTHO05D006005 3.0e-40 170.6 518 28.0
Manes.11G033651 Manihot esculenta HOM05D005013 ORTHO05D006005 6.7e-40 169.5 504 29.2
ClCG09G000200 Citrullus lanatus HOM05D005013 ORTHO05D006005 1.1e-39 168.7 524 28.4
BcaC06g31994 Brassica carinata HOM05D005013 ORTHO05D006005 2.5e-39 167.5 513 27.7
A10p33120 Brassica napus HOM05D005013 ORTHO05D006005 3.3e-39 167.2 513 27.5
HanXRQChr09g0276241 Helianthus annuus HOM05D005013 ORTHO05D006005 5.7e-39 166.4 515 28.0
Sed0027607 Sechium edule HOM05D005013 ORTHO05D006005 5.7e-39 166.4 525 28.0
CiPaw.02G145800 Carya illinoinensis HOM05D005013 ORTHO05D006005 7.4e-39 166.0 500 28.6
Os08g0157100 Oryza sativa ssp. japonica HOM05D005013 ORTHO05D006005 2.1e-38 164.5 512 27.5
TAR623G0538 Trochodendron aralioides HOM05D005013 ORTHO05D006005 2.1e-38 164.5 306 37.3
C09p74080 Brassica napus HOM05D005013 ORTHO05D006005 2.8e-38 164.1 513 27.3
Dinv30436 Davidia involucrata HOM05D005013 ORTHO05D006005 2.8e-38 164.1 405 31.9
Haze_15847 Corylus avellana HOM05D005013 ORTHO05D006005 3.7e-38 163.7 304 36.5
Potri.001G190000 Populus trichocarpa HOM05D005013 ORTHO05D006005 6.2e-38 162.9 503 28.4
arahy.Tifrunner.gnm1.ann1.YYV7TY Arachis hypogaea HOM05D005013 ORTHO05D006005 1.1e-37 162.2 282 36.9
Thhalv10018561m.g Eutrema salsugineum HOM05D005013 ORTHO05D006005 1.4e-37 161.8 513 27.3
Sp5g36040 Schrenkiella parvula HOM05D005013 ORTHO05D006005 3.1e-37 160.6 513 27.1
CAN.G1143.12 Capsicum annuum HOM05D005013 ORTHO05D006005 9.0e-37 159.1 493 27.8
Sc15g0001880 Simmondsia chinensis HOM05D005013 ORTHO05D006005 1.2e-36 158.7 397 32.0
Zm00001eb415930 Zea mays HOM05D005013 ORTHO05D006005 3.4e-36 157.1 530 27.9
Actinidia21716 Actinidia chinensis HOM05D005013 ORTHO05D006005 5.0e-35 153.3 254 42.5
TWI75G0851 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 5.0e-35 153.3 517 27.5
Aqoxy2G02285 Aquilegia oxysepala HOM05D005013 ORTHO05D006005 1.1e-34 152.1 531 27.5
PSO339G6278 Papaver somniferum HOM05D005013 ORTHO05D006005 1.1e-34 152.1 520 26.2
TWI12G0488 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 2.5e-34 151.0 519 27.4
Ah.01g005800 Amaranthus hybridus HOM05D005013 ORTHO05D006005 3.2e-34 150.6 480 27.1
BcaNung02135 Brassica carinata HOM05D005013 ORTHO05D006005 5.5e-34 149.8 468 27.8
BolC9t60139H Brassica oleracea HOM05D005013 ORTHO05D006005 7.1e-34 149.4 540 25.9
PSO513G0173 Papaver somniferum HOM05D005013 ORTHO05D006005 1.6e-33 148.3 520 26.0
CDE12G0264 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 2.3e-32 144.4 487 26.9
Duzib160G0376 Durio zibethinus HOM05D005013 ORTHO05D006005 3.0e-32 144.1 489 27.6
AL2G41830 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 3.9e-32 143.7 273 36.6
AUR62031914 Chenopodium quinoa HOM05D005013 ORTHO05D006005 6.7e-32 142.9 503 26.2
AUR62022205 Chenopodium quinoa HOM05D005013 ORTHO05D006005 3.3e-31 140.6 503 26.6
EL10Ac9g21206 Beta vulgaris HOM05D005013 ORTHO05D006005 7.4e-31 139.4 503 26.2
AL2G41840 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 1.8e-29 134.8 367 29.2
ATR0661G470 Amborella trichopoda HOM05D005013 ORTHO05D006005 9.0e-29 132.5 508 25.8
Zm00001eb172540 Zea mays HOM05D005013 ORTHO05D006005 2.2e-27 127.9 480 25.6
BraA10t45345Z Brassica rapa HOM05D005013 ORTHO05D006005 8.5e-27 125.9 131 49.6
Ah.01g022080 Amaranthus hybridus HOM05D005013 ORTHO05D006005 3.0e-24 117.5 121 48.8
SHI11095 Sapria himalayana HOM05D005013 ORTHO05D006005 1.5e-23 115.2 162 45.7
Mapoly0123s0029 Marchantia polymorpha HOM05D005013 ORTHO05D006005 5.7e-23 113.2 526 24.5
SMO116G0383 Selaginella moellendorffii HOM05D005013 ORTHO05D006005 7.4e-23 112.8 420 26.4
Cpa.g.sc109.1 Carica papaya HOM05D005013 ORTHO05D006005 1.3e-22 112.1 154 43.5
Pp3c1_7460 Physcomitrium patens HOM05D005013 ORTHO05D006005 1.3e-22 112.1 533 24.8
HPP92_015196 Vanilla planifolia HOM05D005013 ORTHO05D006005 1.4e-21 108.6 363 26.4
AagrBONN_evm.TU.Sc2ySwM_117.3356 Anthoceros agrestis HOM05D005013 ORTHO05D006005 5.3e-21 106.7 425 27.1
CARHR074670 Cardamine hirsuta HOM05D005013 ORTHO05D006005 4.2e-18 97.1 78 55.1
CAN.G907.1 Capsicum annuum HOM05D005013 ORTHO05D006005 1.2e-17 95.5 89 55.1
CDE06G0689 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 3.3e-15 87.4 187 33.2
Lsat_1_v5_gn_6_46660 Lactuca sativa HOM05D005013 ORTHO05D006005 3.1e-13 80.9 93 48.4
CBR_g8033 Chara braunii HOM05D005013 ORTHO05D006005 4.5e-12 77.0 344 26.7
TAR369G0672 Trochodendron aralioides HOM05D005013 ORTHO05D006005 1.9e-10 71.6 238 29.8
Psat4g155920 Pisum sativum HOM05D001854 ORTHO05D001800 8.0e-09 66.2 163 34.4
HPP92_015185 Vanilla planifolia HOM05D005013 ORTHO05D006005 2.3e-08 64.7 131 31.3
Psat4g155880 Pisum sativum HOM05D001854 ORTHO05D001800 3.0e-08 64.3 163 34.4
Cpa.g.sc109.3 Carica papaya HOM05D005013 ORTHO05D006005 2.0e-07 61.6 149 28.2
Oeu023599.1 Olea europaea HOM05D005013 ORTHO05D006005 1.7e-06 58.5 89 32.6


User provided reference genes

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