Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.I00797 Erythranthe guttata HOM05D004715 ORTHO05D005644 5.0e-120 434.5 225 100.0
Oeu052278.1 Olea europaea HOM05D004715 ORTHO05D005644 3.7e-99 365.2 225 81.8
MSTRG.11119 Avicennia marina HOM05D004715 ORTHO05D005644 3.2e-98 362.1 225 82.7
SGA_v2.0_scaffold5G02664 Striga asiatica HOM05D004715 ORTHO05D005644 6.8e-93 344.4 225 78.2
unitig_0.g2002 Utricularia gibba HOM05D004715 ORTHO05D005644 1.7e-88 329.7 253 68.8
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 1.5e-87 326.6 229 74.2
SalBow2G3045 Salvia bowleyana HOM05D004715 ORTHO05D005644 1.1e-85 320.5 191 84.3
DCAR_025488 Daucus carota HOM05D004715 ORTHO05D005644 1.1e-77 293.9 225 68.4
Oeu063807.1 Olea europaea HOM05D004715 ORTHO05D005644 1.8e-77 293.1 179 84.4
Lj5A69G39 Lonicera japonica HOM05D004715 ORTHO05D005644 5.1e-72 275.0 232 65.9
Cc04_g04100 Coffea canephora HOM05D004715 ORTHO05D005644 1.1e-71 273.9 216 66.7
CAN.G1830.13 Capsicum annuum HOM05D004715 ORTHO05D005644 5.6e-71 271.6 231 62.3
Dinv30576 Davidia involucrata HOM05D004715 ORTHO05D005644 1.2e-70 270.4 225 64.0
Hma1.2p1_1398F.1_g280805 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 2.4e-69 266.2 225 61.8
Nitab4.5_0004281g0110 Nicotiana tabacum HOM05D004715 ORTHO05D005644 5.2e-69 265.0 222 62.2
Hma1.2p1_0317F.1_g123670 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 8.9e-69 264.2 225 61.3
Hma1.2p1_1398F.1_g280822 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 8.9e-69 264.2 225 61.3
Lsat_1_v5_gn_5_132400 Lactuca sativa HOM05D004715 ORTHO05D005644 1.5e-68 263.5 225 62.2
PGSC0003DMG403012981 Solanum tuberosum HOM05D004715 ORTHO05D005644 2.6e-68 262.7 231 61.5
CSS0021095 Camellia sinensis var. sinensis HOM05D004715 ORTHO05D005644 4.4e-68 261.9 225 62.7
Actinidia01764 Actinidia chinensis HOM05D004715 ORTHO05D005644 2.2e-67 259.6 222 61.7
HanXRQChr15g0463891 Helianthus annuus HOM05D004715 ORTHO05D005644 4.9e-67 258.5 226 59.7
Solyc09g008630.3 Solanum lycopersicum HOM05D004715 ORTHO05D005644 1.1e-66 257.3 231 60.6
Sopen09g003430 Solanum pennellii HOM05D004715 ORTHO05D005644 2.4e-66 256.1 231 60.2
Rhsim08G0215800 Rhododendron simsii HOM05D004715 ORTHO05D005644 3.2e-66 255.8 231 61.0
Aqoxy1G00791 Aquilegia oxysepala HOM05D004715 ORTHO05D005644 9.3e-66 254.2 225 57.8
GSVIVG01017274001 Vitis vinifera HOM05D004715 ORTHO05D005644 2.7e-65 252.7 225 58.2
TAR369G0040 Trochodendron aralioides HOM05D004715 ORTHO05D005644 7.3e-63 244.6 225 57.3
PGR102G1320 Punica granatum HOM05D004715 ORTHO05D005644 2.1e-62 243.0 225 57.3
QL05p027948 Quercus lobata HOM05D004715 ORTHO05D005644 8.1e-62 241.1 224 55.8
TWI18G0840 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 8.1e-62 241.1 225 56.0
vmacro18968 Vaccinium macrocarpon HOM05D004715 ORTHO05D005644 2.4e-61 239.6 275 53.1
arahy.Tifrunner.gnm1.ann1.EP2671 Arachis hypogaea HOM05D004715 ORTHO05D005644 4.0e-61 238.8 226 55.8
Nn7g35903 Nelumbo nucifera HOM05D004715 ORTHO05D005644 6.9e-61 238.0 223 55.6
PSO384G1744 Papaver somniferum HOM05D004715 ORTHO05D005644 6.9e-61 238.0 225 54.7
arahy.Tifrunner.gnm1.ann1.GHMT6A Arachis hypogaea HOM05D004715 ORTHO05D005644 9.0e-61 237.7 226 55.8
HPP92_025406 Vanilla planifolia HOM05D004715 ORTHO05D005644 9.0e-61 237.7 221 55.2
CsaV3_7G032580 Cucumis sativus L. HOM05D004715 ORTHO05D005644 2.0e-60 236.5 228 56.1
ClCG09G002750 Citrullus lanatus HOM05D004715 ORTHO05D005644 5.8e-60 235.0 225 56.4
CiPaw.01G245000 Carya illinoinensis HOM05D004715 ORTHO05D005644 9.9e-60 234.2 225 55.1
PSO339G1448 Papaver somniferum HOM05D004715 ORTHO05D005644 9.9e-60 234.2 225 54.2
Cfa001997 Carpinus fangiana HOM05D004715 ORTHO05D005644 1.7e-59 233.4 225 55.6
Sed0013432 Sechium edule HOM05D004715 ORTHO05D005644 2.2e-59 233.0 224 56.2
CANSAT56G4056 Cannabis sativa HOM05D004715 ORTHO05D005644 8.4e-59 231.1 227 52.9
Phvul.005G004200 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 8.4e-59 231.1 227 54.2
Lalb_Chr22g0350991 Lupinus albus HOM05D004715 ORTHO05D005644 2.4e-58 229.6 227 54.6
Thecc.06G070800 Theobroma cacao HOM05D004715 ORTHO05D005644 2.4e-58 229.6 228 54.4
TWI12G0849 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 2.4e-58 229.6 216 54.6
MELO3C023404.2 Cucumis melo HOM05D004715 ORTHO05D005644 3.2e-58 229.2 225 55.1
Phvul.005G019100 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 4.2e-58 228.8 227 53.7
Gohir.D10G075500 Gossypium hirsutum HOM05D004715 ORTHO05D005644 5.4e-58 228.4 228 53.9
Gorai.011G081500 Gossypium raimondii HOM05D004715 ORTHO05D005644 5.4e-58 228.4 228 53.9
RcHm_v2.0_Chr2g0123461 Rosa chinensis HOM05D004715 ORTHO05D005644 1.2e-57 227.3 224 54.0
AUR62000794 Chenopodium quinoa HOM05D004715 ORTHO05D005644 2.1e-57 226.5 223 52.5
Glyma.04G133700 Glycine max HOM05D004715 ORTHO05D005644 2.7e-57 226.1 227 52.9
Prupe.3G081400 Prunus persica HOM05D004715 ORTHO05D005644 3.5e-57 225.7 226 53.1
Manes.11G053500 Manihot esculenta HOM05D004715 ORTHO05D005644 1.3e-56 223.8 229 52.0
Ca_12943_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 1.7e-56 223.4 227 54.2
Os05g0453900 Oryza sativa ssp. japonica HOM05D004715 ORTHO05D005644 1.7e-56 223.4 221 52.5
Potri.006G142300 Populus trichocarpa HOM05D004715 ORTHO05D005644 3.9e-56 222.2 229 51.5
Gohir.A05G125400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 5.1e-56 221.9 228 53.9
Gorai.009G130400 Gossypium raimondii HOM05D004715 ORTHO05D005644 6.6e-56 221.5 228 53.9
RcHm_v2.0_Chr2g0136471 Rosa chinensis HOM05D004715 ORTHO05D005644 6.6e-56 221.5 224 52.2
Lj3g0005798 Lotus japonicus HOM05D004715 ORTHO05D005644 8.7e-56 221.1 227 54.2
Medtr1g052500 Medicago truncatula HOM05D004715 ORTHO05D005644 8.7e-56 221.1 227 52.9
Nitab4.5_0006709g0030 Nicotiana tabacum HOM05D004715 ORTHO05D005644 1.1e-55 220.7 226 55.3
EL10Ac4g09393 Beta vulgaris HOM05D004715 ORTHO05D005644 1.5e-55 220.3 223 51.6
FvH4_1g25440 Fragaria vesca HOM05D004715 ORTHO05D005644 1.5e-55 220.3 224 50.9
Gohir.D05G126400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 7.4e-55 218.0 228 53.1
C02p37490 Brassica napus HOM05D004715 ORTHO05D005644 9.6e-55 217.6 226 50.4
Medtr3g005080 Medicago truncatula HOM05D004715 ORTHO05D005644 9.6e-55 217.6 227 52.0
Sc14g0006620 Simmondsia chinensis HOM05D004715 ORTHO05D005644 9.6e-55 217.6 223 51.1
FAN23G0015 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.3e-54 217.2 224 50.9
BcaC03g15994 Brassica carinata HOM05D004715 ORTHO05D005644 1.6e-54 216.9 226 50.4
Ciclev10026407m.g Citrus clementina HOM05D004715 ORTHO05D005644 1.6e-54 216.9 229 51.5
AUR62005173 Chenopodium quinoa HOM05D004715 ORTHO05D005644 2.1e-54 216.5 217 51.2
TPR.G25532 Trifolium pratense HOM05D004715 ORTHO05D005644 2.1e-54 216.5 227 52.0
Duzib160G0636 Durio zibethinus HOM05D004715 ORTHO05D005644 2.8e-54 216.1 219 53.4
Hund21699 Selenicereus undatus HOM05D004715 ORTHO05D005644 2.8e-54 216.1 217 51.2
Thhalv10019155m.g Eutrema salsugineum HOM05D004715 ORTHO05D005644 4.8e-54 215.3 229 50.7
Aa31LG1G19480 Aethionema arabicum HOM05D004715 ORTHO05D005644 6.2e-54 214.9 229 49.8
AT1G80190 Arabidopsis thaliana HOM05D004715 ORTHO05D005644 8.1e-54 214.5 229 49.3
SEGI_27675 Sequoiadendron giganteum HOM05D004715 ORTHO05D005644 1.1e-53 214.2 221 49.8
AL2G41320 Arabidopsis lyrata HOM05D004715 ORTHO05D005644 3.1e-53 212.6 229 49.3
Cpa.g.sc10.228 Carica papaya HOM05D004715 ORTHO05D005644 3.1e-53 212.6 229 51.5
Glyma.07G105000 Glycine max HOM05D004715 ORTHO05D005644 3.1e-53 212.6 224 51.3
A02p23740 Brassica napus HOM05D004715 ORTHO05D005644 5.3e-53 211.8 226 49.6
BraA02t07366Z Brassica rapa HOM05D004715 ORTHO05D005644 5.3e-53 211.8 226 49.6
Duzib235G0750 Durio zibethinus HOM05D004715 ORTHO05D005644 6.9e-53 211.5 228 51.3
Peaxi162Scf00125g00003 Petunia axillaris HOM05D004715 ORTHO05D005644 9.0e-53 211.1 178 65.2
BcaB05g25289 Brassica carinata HOM05D004715 ORTHO05D005644 1.5e-52 210.3 229 49.8
CDE02G3949 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 1.5e-52 210.3 225 49.3
FAN26G3166 Fragaria x ananassa HOM05D004715 ORTHO05D005644 3.4e-52 209.1 218 50.5
CARHR074290 Cardamine hirsuta HOM05D004715 ORTHO05D005644 4.5e-52 208.8 229 47.6
FAN19G1260 Fragaria x ananassa HOM05D000191 ORTHO05D005644 4.5e-52 208.8 218 49.5
Ciclev10027256m.g Citrus clementina HOM05D004715 ORTHO05D005644 5.8e-52 208.4 224 50.0
FAN28G2078 Fragaria x ananassa HOM05D004715 ORTHO05D005644 5.8e-52 208.4 218 50.5
THA.LOC104812498 Tarenaya hassleriana HOM05D004715 ORTHO05D005644 5.8e-52 208.4 229 49.3
Carub.0002s2733 Capsella rubella HOM05D004715 ORTHO05D005644 7.6e-52 208.0 229 48.0
Carub.0005s0104 Capsella rubella HOM05D004715 ORTHO05D005644 7.6e-52 208.0 229 48.0
MD17G1206800 Malus domestica HOM05D004715 ORTHO05D005644 4.9e-51 205.3 226 49.1
Eucgr.F02544 Eucalyptus grandis HOM05D004715 ORTHO05D005644 1.1e-50 204.1 200 54.5
Rhsim03G0103800 Rhododendron simsii HOM05D004715 ORTHO05D005644 2.7e-49 199.5 225 49.8
BcaB02g07291 Brassica carinata HOM05D004715 ORTHO05D005644 3.5e-49 199.1 227 46.7
Sp5g35610 Schrenkiella parvula HOM05D004715 ORTHO05D005644 3.5e-49 199.1 247 44.9
Peaxi162Scf01195g00016 Petunia axillaris HOM05D004715 ORTHO05D005644 7.9e-49 198.0 204 54.9
Aa31LG4G470 Aethionema arabicum HOM05D004715 ORTHO05D005644 1.0e-48 197.6 220 48.2
BolC2t09760H Brassica oleracea HOM05D004715 ORTHO05D005644 1.3e-48 197.2 220 48.2
Atru.chr1.3057 Acer truncatum HOM05D004715 ORTHO05D005644 2.3e-48 196.4 210 51.4
Ah.06g189580 Amaranthus hybridus HOM05D004715 ORTHO05D005644 5.1e-48 195.3 217 47.5
Sabra06G0111400 Salix brachista HOM05D004715 ORTHO05D005644 9.6e-47 191.0 294 41.8
Rhsim03G0101400 Rhododendron simsii HOM05D004715 ORTHO05D005644 2.0e-44 183.3 216 47.7
C06p28980 Brassica napus HOM05D004715 ORTHO05D005644 3.4e-44 182.6 220 45.5
ATR0210G050 Amborella trichopoda HOM05D004715 ORTHO05D005644 4.5e-44 182.2 196 49.0
BcaC08g45296 Brassica carinata HOM05D004715 ORTHO05D005644 9.3e-42 174.5 220 42.7
BolC6t38064H Brassica oleracea HOM05D004715 ORTHO05D005644 2.7e-41 172.9 220 43.6
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 2.7e-41 172.9 143 60.1
Atru.BG.159.p Acer truncatum HOM05D004715 ORTHO05D005644 3.5e-41 172.6 146 60.3
Haze_16520 Corylus avellana HOM05D004715 ORTHO05D005644 3.5e-41 172.6 225 44.4
AagrBONN_evm.TU.Sc2ySwM_368.872 Anthoceros agrestis HOM05D004715 ORTHO05D005644 1.3e-40 170.6 222 42.8
TPR.G1414 Trifolium pratense HOM05D004715 ORTHO05D005644 5.1e-40 168.7 175 50.9
SMO347G0348 Selaginella moellendorffii HOM05D004715 ORTHO05D005644 1.9e-39 166.8 216 41.7
Zm00001eb065860 Zea mays HOM05D004715 ORTHO05D005644 2.5e-39 166.4 221 42.5
ECA234G4462 Erigeron canadensis HOM05D004715 ORTHO05D005644 2.8e-38 162.9 148 55.4
Pp3c20_16980 Physcomitrium patens HOM05D004715 ORTHO05D005644 6.3e-38 161.8 225 41.3
Pp3c20_17250 Physcomitrium patens HOM05D004715 ORTHO05D005644 6.3e-38 161.8 225 41.3
Cc00_g27240 Coffea canephora HOM05D004715 ORTHO05D005644 2.6e-36 156.4 179 50.8
Psat5g222760 Pisum sativum HOM05D004715 ORTHO05D005644 1.0e-35 154.5 171 48.5
MBI14_g02860_MAGBIO Magnolia biondii HOM05D004715 ORTHO05D005644 3.8e-35 152.5 112 65.2
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 1.9e-34 150.2 161 49.7
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 4.2e-34 149.1 222 38.3
A07p26560 Brassica napus HOM05D004715 ORTHO05D005644 3.9e-32 142.5 182 43.4
Mapoly0008s0246 Marchantia polymorpha HOM05D004715 ORTHO05D005644 8.7e-32 141.4 222 37.4
TPR.G1424 Trifolium pratense HOM05D004715 ORTHO05D005644 9.7e-31 137.9 220 40.9
Gohir.A10G076000 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.1e-29 134.4 115 60.0
VMungo0331G0566 Vigna mungo HOM05D004715 ORTHO05D005644 1.4e-29 134.0 202 42.6
MSTRG.22727 Avicennia marina HOM05D004715 ORTHO05D005644 1.2e-28 131.0 95 73.7
COL.COLO4_12914 Corchorus olitorius HOM05D004715 ORTHO05D005644 2.0e-28 130.2 110 58.2
CDE09G0914 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 7.7e-28 128.3 122 50.8
CDE09G0533 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 1.4e-26 124.0 146 45.2
TAR369G0577 Trochodendron aralioides HOM05D004715 ORTHO05D005644 1.2e-25 120.9 225 36.4
BraA07t30299Z Brassica rapa HOM05D004715 ORTHO05D005644 4.6e-25 119.0 111 52.3
MCO12G383 Micromonas commoda HOM05D004715 ORTHO05D005644 3.0e-24 116.3 222 31.1
FAN14G0801 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.5e-23 114.0 224 35.3
Ca_26811_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 1.5e-20 104.0 140 43.6
TPR.G30851 Trifolium pratense HOM05D004715 ORTHO05D005644 7.2e-18 95.1 82 61.0
Gohir.A10G075900 Gossypium hirsutum HOM05D004715 ORTHO05D005644 9.4e-18 94.7 113 46.9
Hma1.2p1_1398F.1_g280810 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 4.7e-17 92.4 56 82.1
Medtr7g052330 Medicago truncatula HOM05D004715 ORTHO05D005644 2.6e-15 86.7 127 43.3
TPR.G13435 Trifolium pratense HOM05D004715 ORTHO05D005644 3.3e-15 86.3 140 38.6
FvH4_6g30230 Fragaria vesca HOM05D004715 ORTHO05D005644 4.1e-13 79.3 225 30.7
Cre03.g161050 Chlamydomonas reinhardtii HOM05D004715 ORTHO05D005644 9.1e-13 78.2 221 28.1
PRCOL_00005608 Prasinoderma coloniale HOM05D004715 ORTHO05D005644 9.1e-13 78.2 224 28.6
Hma1.2p1_1398F.1_g280823 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.2e-12 77.8 49 73.5
TAR623G1252 Trochodendron aralioides HOM05D004715 ORTHO05D005644 2.0e-12 77.0 59 62.7
HanXRQChr09g0268691 Helianthus annuus HOM05D004715 ORTHO05D005644 2.6e-07 60.1 48 58.3
Cfa026515 Carpinus fangiana HOM05D040851 ORTHO05D024893 7.5e-07 58.5 112 33.0


User provided reference genes

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