Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.I00557 Erythranthe guttata HOM05D005415 ORTHO05D006242 0.0e+00 1267.7 687 100.0
MSTRG.22895 Avicennia marina HOM05D005415 ORTHO05D006242 4.0e-213 745.3 675 63.9
SGA_v2.0_scaffold414G51200 Striga asiatica HOM05D005415 ORTHO05D006242 3.2e-202 709.1 693 60.0
SalBow5G0795 Salvia bowleyana HOM05D005415 ORTHO05D006242 5.0e-187 658.7 659 56.8
Dinv11193 Davidia involucrata HOM05D005415 ORTHO05D006242 1.4e-152 544.3 625 51.0
PGSC0003DMG400013896 Solanum tuberosum HOM05D005415 ORTHO05D006242 8.3e-150 535.0 602 50.3
Sopen12g001850 Solanum pennellii HOM05D005415 ORTHO05D006242 7.0e-149 531.9 583 52.1
Solyc12g005900.3 Solanum lycopersicum HOM05D005415 ORTHO05D006242 2.3e-147 526.9 586 52.0
GSVIVG01008582001 Vitis vinifera HOM05D005415 ORTHO05D006242 7.3e-146 521.9 627 49.9
Oeu030666.2 Olea europaea HOM05D005415 ORTHO05D006242 8.0e-145 518.5 898 39.4
Actinidia18334 Actinidia chinensis HOM05D005415 ORTHO05D006242 6.8e-144 515.4 624 48.2
Nitab4.5_0001213g0090 Nicotiana tabacum HOM05D005415 ORTHO05D006242 2.2e-142 510.4 609 49.9
Cc10_g14800 Coffea canephora HOM05D005415 ORTHO05D006242 8.3e-142 508.4 679 47.1
unitig_8.g4692 Utricularia gibba HOM05D005415 ORTHO05D006242 2.7e-140 503.4 661 46.7
Thecc.03G133700 Theobroma cacao HOM05D005415 ORTHO05D006242 1.0e-139 501.5 600 49.5
Ciclev10031056m.g Citrus clementina HOM05D005415 ORTHO05D006242 1.1e-138 498.0 549 52.3
Lj9C481T20 Lonicera japonica HOM05D005415 ORTHO05D006242 1.9e-138 497.3 554 50.0
Nitab4.5_0003683g0010 Nicotiana tabacum HOM05D005415 ORTHO05D006242 3.3e-138 496.5 590 49.0
QL10p002178 Quercus lobata HOM05D005415 ORTHO05D006242 4.7e-137 492.7 630 47.5
TAR629G2415 Trochodendron aralioides HOM05D005415 ORTHO05D006242 4.7e-137 492.7 622 48.2
Gorai.001G056700 Gossypium raimondii HOM05D005415 ORTHO05D006242 1.1e-136 491.5 608 47.5
Phvul.002G284900 Phaseolus vulgaris HOM05D005415 ORTHO05D006242 1.1e-136 491.5 621 46.7
Atru.chr6.1849 Acer truncatum HOM05D005415 ORTHO05D006242 4.0e-136 489.6 588 48.5
Eucgr.B00088 Eucalyptus grandis HOM05D005415 ORTHO05D006242 4.0e-136 489.6 574 48.8
COL.COLO4_16633 Corchorus olitorius HOM05D005415 ORTHO05D006242 3.4e-135 486.5 555 50.5
Gohir.D07G053600 Gossypium hirsutum HOM05D005415 ORTHO05D006242 3.4e-135 486.5 607 47.4
CiPaw.13G052100 Carya illinoinensis HOM05D005415 ORTHO05D006242 4.4e-135 486.1 608 47.4
CsaV3_1G000400 Cucumis sativus L. HOM05D005415 ORTHO05D006242 7.5e-135 485.3 630 46.2
Duzib068G0666 Durio zibethinus HOM05D005415 ORTHO05D006242 7.5e-135 485.3 591 48.4
PGR083G0902 Punica granatum HOM05D005415 ORTHO05D006242 9.8e-135 485.0 580 48.3
vmacro19135 Vaccinium macrocarpon HOM05D005415 ORTHO05D006242 1.7e-134 484.2 673 44.0
Cfa018765 Carpinus fangiana HOM05D005415 ORTHO05D006242 2.2e-134 483.8 570 50.5
Peaxi162Scf00047g00185 Petunia axillaris HOM05D005415 ORTHO05D006242 2.2e-134 483.8 726 44.4
Sed0003726 Sechium edule HOM05D005415 ORTHO05D006242 6.4e-134 482.3 606 46.9
Sabra15G0120800 Salix brachista HOM05D005415 ORTHO05D006242 1.1e-133 481.5 615 48.5
Potri.015G100200 Populus trichocarpa HOM05D005415 ORTHO05D006242 3.2e-133 479.9 614 47.4
Sc10g0010570 Simmondsia chinensis HOM05D005415 ORTHO05D006242 2.7e-132 476.9 574 48.6
arahy.Tifrunner.gnm1.ann1.NCF6IW Arachis hypogaea HOM05D005415 ORTHO05D006242 4.6e-132 476.1 652 45.7
MELO3C026191.2 Cucumis melo HOM05D005415 ORTHO05D006242 1.7e-131 474.2 621 45.7
HanXRQChr09g0273461 Helianthus annuus HOM05D005415 ORTHO05D006242 1.1e-130 471.5 623 46.5
RcHm_v2.0_Chr7g0189541 Rosa chinensis HOM05D005415 ORTHO05D006242 2.5e-130 470.3 618 47.2
Lsat_1_v5_gn_4_82521 Lactuca sativa HOM05D005415 ORTHO05D006242 5.6e-130 469.2 636 45.4
Rhsim08G0192500 Rhododendron simsii HOM05D005415 ORTHO05D006242 2.8e-129 466.8 641 44.9
VMungo0251G3541 Vigna mungo HOM05D005415 ORTHO05D006242 3.1e-128 463.4 662 42.9
EL10Ac5g11383 Beta vulgaris HOM05D005415 ORTHO05D006242 4.0e-128 463.0 672 44.5
Lj4g0026231 Lotus japonicus HOM05D005415 ORTHO05D006242 4.0e-128 463.0 707 42.9
Ca_17566_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 2.0e-127 460.7 573 47.1
Ca_29727_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 2.0e-127 460.7 573 47.1
FAN19G3201 Fragaria x ananassa HOM05D005415 ORTHO05D006242 1.7e-126 457.6 623 45.7
FAN26G2295 Fragaria x ananassa HOM05D005415 ORTHO05D006242 1.7e-126 457.6 613 46.5
THA.LOC104798938 Tarenaya hassleriana HOM05D005415 ORTHO05D006242 4.9e-126 456.1 551 47.2
Glyma.08G010700 Glycine max HOM05D005415 ORTHO05D006242 1.9e-125 454.1 676 41.0
FvH4_1g26610 Fragaria vesca HOM05D005415 ORTHO05D006242 2.4e-125 453.8 605 46.3
Sopen05g009520 Solanum pennellii HOM05D005415 ORTHO05D006242 2.1e-124 450.7 588 46.4
Hund02456 Selenicereus undatus HOM05D005415 ORTHO05D006242 1.0e-123 448.4 609 44.7
AL8G40620 Arabidopsis lyrata HOM05D005415 ORTHO05D006242 1.7e-123 447.6 565 46.7
Aa31LG1G18400 Aethionema arabicum HOM05D005415 ORTHO05D006242 3.0e-123 446.8 591 46.0
CANSAT25G2590 Cannabis sativa HOM05D005415 ORTHO05D006242 1.1e-122 444.9 624 45.0
DCAR_021639 Daucus carota HOM05D005415 ORTHO05D006242 1.1e-122 444.9 688 41.9
Carub.0008s2427 Capsella rubella HOM05D005415 ORTHO05D006242 3.3e-122 443.4 597 44.6
FAN28G1156 Fragaria x ananassa HOM05D005415 ORTHO05D006242 3.3e-122 443.4 608 47.5
Psat7g037120 Pisum sativum HOM05D005415 ORTHO05D006242 4.3e-122 443.0 709 39.9
Thhalv10003815m.g Eutrema salsugineum HOM05D005415 ORTHO05D006242 1.2e-121 441.4 576 47.0
arahy.Tifrunner.gnm1.ann1.MQVT4E Arachis hypogaea HOM05D005415 ORTHO05D006242 3.6e-121 439.9 635 43.8
AUR62038846 Chenopodium quinoa HOM05D005415 ORTHO05D006242 6.2e-121 439.1 582 46.7
ClCG06G018070 Citrullus lanatus HOM05D005415 ORTHO05D006242 1.1e-120 438.3 645 43.4
Prupe.5G147700 Prunus persica HOM05D005415 ORTHO05D006242 1.1e-120 438.3 569 47.1
CARHR277400 Cardamine hirsuta HOM05D005415 ORTHO05D006242 1.4e-120 438.0 580 47.1
AT5G63540 Arabidopsis thaliana HOM05D005415 ORTHO05D006242 3.1e-120 436.8 575 45.6
AUR62029576 Chenopodium quinoa HOM05D005415 ORTHO05D006242 5.2e-120 436.0 584 46.9
AUR62043951 Chenopodium quinoa HOM05D005415 ORTHO05D006242 1.5e-119 434.5 576 46.4
MD14G1152700 Malus domestica HOM05D005415 ORTHO05D006242 1.3e-118 431.4 583 45.8
Lalb_Chr13g0297171 Lupinus albus HOM05D005415 ORTHO05D006242 1.7e-118 431.0 651 41.9
Haze_07175 Corylus avellana HOM05D005415 ORTHO05D006242 8.4e-118 428.7 561 47.4
ECA232G0893 Erigeron canadensis HOM05D005415 ORTHO05D006242 1.1e-117 428.3 700 40.7
Aqoxy3G01618 Aquilegia oxysepala HOM05D005415 ORTHO05D006242 1.9e-117 427.6 731 41.7
Sp2g26630 Schrenkiella parvula HOM05D005415 ORTHO05D006242 3.2e-117 426.8 589 45.5
FAN23G0140 Fragaria x ananassa HOM05D005415 ORTHO05D006242 9.3e-117 425.2 587 45.0
Medtr8g096570 Medicago truncatula HOM05D005415 ORTHO05D006242 1.7e-115 421.0 721 38.3
BcaC04g23337 Brassica carinata HOM05D005415 ORTHO05D006242 1.9e-114 417.5 579 45.1
C09p09400 Brassica napus HOM05D005415 ORTHO05D006242 4.8e-113 412.9 580 45.0
A09p08330 Brassica napus HOM05D005415 ORTHO05D006242 6.9e-112 409.1 611 44.0
BcaB04g19924 Brassica carinata HOM05D005415 ORTHO05D006242 3.4e-111 406.8 575 45.4
MBI07_g01996_MAGBIO Magnolia biondii HOM05D005415 ORTHO05D006242 2.2e-110 404.1 696 38.9
HPP92_021694 Vanilla planifolia HOM05D005415 ORTHO05D006242 2.9e-110 403.7 586 42.3
HPP92_021709 Vanilla planifolia HOM05D005415 ORTHO05D006242 2.9e-110 403.7 621 42.2
Cpa.g.sc4.162 Carica papaya HOM05D005415 ORTHO05D006242 4.2e-109 399.8 608 42.8
BolC9t53852H Brassica oleracea HOM05D005415 ORTHO05D006242 8.7e-107 392.1 635 43.5
BraA09t36482Z Brassica rapa HOM05D005415 ORTHO05D006242 2.1e-105 387.5 630 43.5
PSO017G0412 Papaver somniferum HOM05D005415 ORTHO05D006242 5.8e-103 379.4 694 38.3
PSO478G2612 Papaver somniferum HOM05D005415 ORTHO05D006242 6.4e-102 375.9 688 38.5
Solyc05g014400.4 Solanum lycopersicum HOM05D005415 ORTHO05D006242 6.4e-102 375.9 472 47.2
Manes.06G122000 Manihot esculenta HOM05D005415 ORTHO05D006242 1.4e-101 374.8 468 47.4
Zm00001eb085270 Zea mays HOM05D005415 ORTHO05D006242 4.6e-100 369.8 558 42.1
CAN.G2034.2 Capsicum annuum HOM05D005415 ORTHO05D006242 7.9e-100 369.0 453 48.6
Nn4g22247 Nelumbo nucifera HOM05D005415 ORTHO05D006242 1.3e-99 368.2 481 47.4
CDE05G0217 Ceratophyllum demersum HOM05D005415 ORTHO05D006242 5.5e-93 346.3 674 36.6
ATR0582G259 Amborella trichopoda HOM05D005415 ORTHO05D006242 2.3e-91 340.9 763 33.6
Ah.11g045540 Amaranthus hybridus HOM05D005415 ORTHO05D006242 1.1e-88 332.0 565 40.7
Actinidia25556 Actinidia chinensis HOM05D005415 ORTHO05D006242 1.4e-88 331.6 269 62.5
TPR.G12905 Trifolium pratense HOM05D005415 ORTHO05D006242 1.3e-78 298.5 219 65.3
Gohir.A07G049320 Gossypium hirsutum HOM05D005415 ORTHO05D006242 5.5e-77 293.1 186 73.7
CSS0000208 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 1.7e-73 281.6 237 61.2
Mapoly0147s0014 Marchantia polymorpha HOM05D005415 ORTHO05D006242 1.4e-72 278.5 724 32.0
Pp3c4_19920 Physcomitrium patens HOM05D005415 ORTHO05D006242 9.1e-72 275.8 625 35.0
AagrBONN_evm.TU.Sc2ySwM_117.2504 Anthoceros agrestis HOM05D005415 ORTHO05D006242 1.4e-69 268.5 579 34.9
SMO146G0239 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.8e-67 261.5 554 34.8
SMO173G0006 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 2.2e-65 254.6 554 34.3
Os04g0391000 Oryza sativa ssp. japonica HOM05D005415 ORTHO05D006242 1.7e-62 245.0 233 56.7
SHI31561 Sapria himalayana HOM05D005415 ORTHO05D006242 2.1e-60 238.0 197 62.4
SMO146G0204 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 4.7e-60 236.9 553 32.9
Gohir.A07G049360 Gossypium hirsutum HOM05D005415 ORTHO05D006242 2.5e-53 214.5 206 55.8
TPR.G12965 Trifolium pratense HOM05D005415 ORTHO05D006242 3.0e-51 207.6 210 53.8
SMO173G0041 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 4.2e-45 187.2 206 51.0
SHI10695 Sapria himalayana HOM05D005415 ORTHO05D006242 2.3e-43 181.4 189 52.4
TAR629G1046 Trochodendron aralioides HOM05D005415 ORTHO05D006242 1.5e-42 178.7 146 65.1
CBR_g45436 Chara braunii HOM05D005415 ORTHO05D006242 9.2e-40 169.5 231 40.3
SHI10702 Sapria himalayana HOM05D005415 ORTHO05D006242 1.2e-34 152.5 207 44.9
PSO302G0032 Papaver somniferum HOM05D005415 ORTHO05D006242 8.0e-28 129.8 194 44.8
Cre17.g712450 Chlamydomonas reinhardtii HOM05D005415 ORTHO05D006242 8.9e-27 126.3 210 38.1
SHI31560 Sapria himalayana HOM05D000002 ORTHO05D000001 1.2e-26 125.9 153 47.7
CSS0026788 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 2.6e-26 124.8 102 62.7
MCO10G310 Micromonas commoda HOM05D005415 ORTHO05D006242 9.8e-26 122.9 267 33.7
Medtr1g057810 Medicago truncatula HOM05D000559 ORTHO05D000596 1.3e-25 122.5 198 37.4
Medtr1g105150 Medicago truncatula HOM05D000559 ORTHO05D000596 1.3e-25 122.5 198 37.4
PSO478G1426 Papaver somniferum HOM05D005415 ORTHO05D006242 5.0e-22 110.5 363 28.1
SEGI_11582 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 1.2e-20 105.9 80 63.8
PSO063G6924 Papaver somniferum HOM05D005415 ORTHO05D006242 2.6e-18 98.2 132 41.7
PRCOL_00000625 Prasinoderma coloniale HOM05D005415 ORTHO05D006242 2.7e-15 88.2 139 37.4
Lsat_1_v5_gn_8_99581 Lactuca sativa HOM05D005415 ORTHO05D006242 6.0e-15 87.0 134 40.3
TAR381G1645 Trochodendron aralioides HOM05D005415 ORTHO05D006242 7.8e-15 86.7 59 69.5
Medtr1g069480 Medicago truncatula HOM05D005415 ORTHO05D006242 1.3e-14 85.9 101 48.5
Lsat_1_v5_gn_4_20540 Lactuca sativa HOM05D005415 ORTHO05D006242 2.0e-10 72.0 48 68.8
SHI10696 Sapria himalayana HOM05D005415 ORTHO05D006242 4.4e-10 70.9 49 67.3
Cre16.g653000 Chlamydomonas reinhardtii HOM05D006752 ORTHO05D008597 5.8e-10 70.5 146 32.9
Medtr1g071270 Medicago truncatula HOM05D005415 ORTHO05D006242 4.9e-09 67.4 103 38.8
SMO146G0246 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 1.4e-08 65.9 109 36.7
SEGI_12458 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 2.4e-08 65.1 82 37.8
HPP92_021692 Vanilla planifolia HOM05D005415 ORTHO05D006242 3.2e-08 64.7 57 54.4
SMO146G0197 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 7.1e-08 63.5 143 34.3
CBR_g41660 Chara braunii HOM05D001740 ORTHO05D001468 1.2e-07 62.8 170 30.6
PSO017G3192 Papaver somniferum HOM05D005415 ORTHO05D006242 3.5e-07 61.2 76 43.4
PSO063G6394 Papaver somniferum HOM05D005415 ORTHO05D006242 3.5e-07 61.2 56 58.9
THA.LOC104815109 Tarenaya hassleriana HOM05D006752 ORTHO05D008597 1.7e-06 58.9 210 26.2
PSO013G0019 Papaver somniferum HOM05D005415 ORTHO05D006242 3.9e-06 57.8 133 33.8
Manes.03G066500 Manihot esculenta HOM05D006752 ORTHO05D008597 5.1e-06 57.4 145 32.4
Medtr1g069490 Medicago truncatula HOM05D000559 ORTHO05D000596 8.6e-06 56.6 88 38.6


User provided reference genes

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