Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.I00014 Erythranthe guttata HOM05D003618 ORTHO05D004302 1.9e-270 935.3 470 100.0
Migut.I00013 Erythranthe guttata HOM05D003618 ORTHO05D004302 5.3e-241 837.4 467 88.9
Oeu035988.1 Olea europaea HOM05D003618 ORTHO05D004302 8.0e-229 797.0 467 85.2
CSS0045852 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 1.3e-226 789.6 465 83.4
MSTRG.23128 Avicennia marina HOM05D003618 ORTHO05D004302 1.4e-225 786.2 466 82.6
Peaxi162Scf00017g02915 Petunia axillaris HOM05D003618 ORTHO05D004302 9.2e-225 783.5 466 82.8
MSTRG.11450 Avicennia marina HOM05D003618 ORTHO05D004302 2.0e-224 782.3 466 81.8
Nitab4.5_0007719g0010 Nicotiana tabacum HOM05D003618 ORTHO05D004302 2.0e-224 782.3 465 83.4
Oeu040829.1 Olea europaea HOM05D003618 ORTHO05D004302 3.5e-224 781.6 466 84.1
SalBow5G0347 Salvia bowleyana HOM05D003618 ORTHO05D004302 7.8e-224 780.4 466 83.3
SalBow5G5681 Salvia bowleyana HOM05D003618 ORTHO05D004302 7.8e-224 780.4 466 83.3
Solyc03g114340.3 Solanum lycopersicum HOM05D003618 ORTHO05D004302 1.0e-223 780.0 467 82.9
Sopen03g033440 Solanum pennellii HOM05D003618 ORTHO05D004302 1.0e-223 780.0 467 82.9
unitig_0.g1445 Utricularia gibba HOM05D003618 ORTHO05D004302 1.0e-223 780.0 465 83.2
SGA_v2.0_scaffold90G27940 Striga asiatica HOM05D003618 ORTHO05D004302 2.3e-223 778.9 467 82.4
Nitab4.5_0009783g0020 Nicotiana tabacum HOM05D003618 ORTHO05D004302 6.6e-223 777.3 465 83.0
Eucgr.B00316 Eucalyptus grandis HOM05D003618 ORTHO05D004302 8.6e-223 776.9 466 82.2
FvH4_5g05300 Fragaria vesca HOM05D003618 ORTHO05D004302 8.6e-223 776.9 465 82.2
Manes.14G065900 Manihot esculenta HOM05D003618 ORTHO05D004302 1.1e-222 776.5 466 81.8
Cc04_g14010 Coffea canephora HOM05D003618 ORTHO05D004302 5.6e-222 774.2 467 80.9
FAN18G3775 Fragaria x ananassa HOM05D003618 ORTHO05D004302 7.3e-222 773.9 465 81.9
Nn4g22770 Nelumbo nucifera HOM05D003618 ORTHO05D004302 7.3e-222 773.9 466 83.5
MD06G1174000 Malus domestica HOM05D003618 ORTHO05D004302 1.6e-221 772.7 466 82.2
Cfa019131 Carpinus fangiana HOM05D003618 ORTHO05D004302 6.1e-221 770.8 464 82.3
Haze_07469 Corylus avellana HOM05D003618 ORTHO05D004302 1.0e-220 770.0 464 82.1
RcHm_v2.0_Chr7g0193571 Rosa chinensis HOM05D003618 ORTHO05D004302 1.8e-220 769.2 465 81.1
MD14G1180500 Malus domestica HOM05D003618 ORTHO05D004302 3.0e-220 768.5 466 81.5
Manes.06G104700 Manihot esculenta HOM05D003618 ORTHO05D004302 1.2e-219 766.5 465 81.1
QL10p011706 Quercus lobata HOM05D003618 ORTHO05D004302 1.2e-219 766.5 465 81.5
Prupe.5G174000 Prunus persica HOM05D003618 ORTHO05D004302 1.5e-219 766.1 466 81.5
Lj5A124T67 Lonicera japonica HOM05D003618 ORTHO05D004302 2.0e-219 765.8 468 82.1
Rhsim08G0171900 Rhododendron simsii HOM05D003618 ORTHO05D004302 2.0e-219 765.8 494 78.9
GSVIVG01007752001 Vitis vinifera HOM05D003618 ORTHO05D004302 7.5e-219 763.8 464 81.0
Thecc.03G012400 Theobroma cacao HOM05D003618 ORTHO05D004302 3.7e-218 761.5 467 80.9
TAR629G0089 Trochodendron aralioides HOM05D003618 ORTHO05D004302 4.9e-218 761.1 465 81.9
arahy.Tifrunner.gnm1.ann1.2KV8GB Arachis hypogaea HOM05D003618 ORTHO05D004302 6.4e-218 760.8 466 81.1
DCAR_026133 Daucus carota HOM05D003618 ORTHO05D004302 1.1e-217 760.0 467 80.1
ClCG06G017010 Citrullus lanatus HOM05D003618 ORTHO05D004302 1.8e-217 759.2 465 80.9
arahy.Tifrunner.gnm1.ann1.9FL7A6 Arachis hypogaea HOM05D003618 ORTHO05D004302 2.4e-217 758.8 466 80.9
COL.COLO4_30036 Corchorus olitorius HOM05D003618 ORTHO05D004302 2.4e-217 758.8 467 80.3
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 3.2e-217 758.4 441 84.4
BcaB02g09693 Brassica carinata HOM05D003618 ORTHO05D004302 3.2e-217 758.4 470 80.9
Potri.015G076200 Populus trichocarpa HOM05D003618 ORTHO05D004302 4.1e-217 758.1 468 81.2
FAN04G2056 Fragaria x ananassa HOM05D003618 ORTHO05D004302 9.2e-217 756.9 507 75.5
Sp2g25950 Schrenkiella parvula HOM05D003618 ORTHO05D004302 9.2e-217 756.9 470 80.2
Dinv20656 Davidia involucrata HOM05D003618 ORTHO05D004302 1.6e-216 756.1 467 80.3
Lalb_Chr13g0297811 Lupinus albus HOM05D003618 ORTHO05D004302 2.0e-216 755.7 466 80.9
Potri.012G080900 Populus trichocarpa HOM05D003618 ORTHO05D004302 3.5e-216 755.0 468 80.6
Thhalv10004122m.g Eutrema salsugineum HOM05D003618 ORTHO05D004302 4.6e-216 754.6 470 80.0
Duzib205G1198 Durio zibethinus HOM05D003618 ORTHO05D004302 7.8e-216 753.8 467 80.5
Sed0001158 Sechium edule HOM05D003618 ORTHO05D004302 1.0e-215 753.4 465 80.9
Sed0011107 Sechium edule HOM05D003618 ORTHO05D004302 1.0e-215 753.4 466 80.5
Lalb_Chr07g0182731 Lupinus albus HOM05D003618 ORTHO05D004302 1.7e-215 752.7 466 80.3
TAR622G0131 Trochodendron aralioides HOM05D003618 ORTHO05D004302 1.7e-215 752.7 465 80.9
FAN18G3061 Fragaria x ananassa HOM05D003618 ORTHO05D004302 3.0e-215 751.9 507 74.8
FAN13G0153 Fragaria x ananassa HOM05D003618 ORTHO05D004302 3.9e-215 751.5 507 74.8
CsaV3_1G001500 Cucumis sativus L. HOM05D003618 ORTHO05D004302 5.0e-215 751.1 465 79.8
FAN08G0480 Fragaria x ananassa HOM05D003618 ORTHO05D004302 6.6e-215 750.7 507 74.8
Gohir.A09G171800 Gossypium hirsutum HOM05D003618 ORTHO05D004302 6.6e-215 750.7 467 80.7
Gohir.D09G167500 Gossypium hirsutum HOM05D003618 ORTHO05D004302 1.1e-214 750.0 467 80.5
Sabra15G0101400 Salix brachista HOM05D003618 ORTHO05D004302 1.1e-214 750.0 468 80.3
Ciclev10020004m.g Citrus clementina HOM05D003618 ORTHO05D004302 1.5e-214 749.6 466 79.4
Atru.chr9.2476 Acer truncatum HOM05D003618 ORTHO05D004302 1.9e-214 749.2 465 81.3
MELO3C026292.2 Cucumis melo HOM05D003618 ORTHO05D004302 1.9e-214 749.2 465 79.8
Gorai.006G189200 Gossypium raimondii HOM05D003618 ORTHO05D004302 1.9e-214 749.2 467 80.7
Lalb_Chr12g0201571 Lupinus albus HOM05D003618 ORTHO05D004302 2.5e-214 748.8 493 76.9
Lj9A449G48 Lonicera japonica HOM05D003618 ORTHO05D004302 3.3e-214 748.4 513 75.2
AL8G39750 Arabidopsis lyrata HOM05D003618 ORTHO05D004302 4.3e-214 748.0 469 79.5
Glyma.05G037500 Glycine max HOM05D003618 ORTHO05D004302 5.6e-214 747.7 467 80.1
vmacro19385 Vaccinium macrocarpon HOM05D003618 ORTHO05D004302 1.2e-213 746.5 454 82.2
Phvul.003G200300 Phaseolus vulgaris HOM05D003618 ORTHO05D004302 1.6e-213 746.1 467 80.3
CiPaw.11G026400 Carya illinoinensis HOM05D003618 ORTHO05D004302 2.1e-213 745.7 467 79.4
ECA232G0993 Erigeron canadensis HOM05D003618 ORTHO05D004302 3.6e-213 745.0 467 80.1
THA.LOC104818235 Tarenaya hassleriana HOM05D003618 ORTHO05D004302 3.6e-213 745.0 465 79.8
AT5G62790 Arabidopsis thaliana HOM05D003618 ORTHO05D004302 4.7e-213 744.6 470 79.4
BcaNung01381 Brassica carinata HOM05D003618 ORTHO05D004302 4.7e-213 744.6 470 79.8
CARHR276570 Cardamine hirsuta HOM05D003618 ORTHO05D004302 6.2e-213 744.2 469 79.5
Lsat_1_v5_gn_4_75261 Lactuca sativa HOM05D003618 ORTHO05D004302 6.2e-213 744.2 473 78.4
Medtr4g106870 Medicago truncatula HOM05D003618 ORTHO05D004302 8.0e-213 743.8 468 79.5
Carub.0008s2351 Capsella rubella HOM05D003618 ORTHO05D004302 1.1e-212 743.4 470 78.7
BcaC04g23393 Brassica carinata HOM05D003618 ORTHO05D004302 1.4e-212 743.0 466 79.8
VMungo1215G2328 Vigna mungo HOM05D003618 ORTHO05D004302 1.4e-212 743.0 468 79.9
C09p08850 Brassica napus HOM05D003618 ORTHO05D004302 1.8e-212 742.7 466 79.8
BolC9t53797H Brassica oleracea HOM05D003618 ORTHO05D004302 1.8e-212 742.7 466 79.8
TWI14G0558 Tripterygium wilfordii HOM05D003618 ORTHO05D004302 1.8e-212 742.7 465 79.8
Zm00001eb126690 Zea mays HOM05D003618 ORTHO05D004302 1.8e-212 742.7 466 80.5
Lj4g0012807 Lotus japonicus HOM05D003618 ORTHO05D004302 3.1e-212 741.9 465 78.5
Os01g0106900 Oryza sativa ssp. japonica HOM05D003618 ORTHO05D004302 3.1e-212 741.9 469 79.7
A09p07850 Brassica napus HOM05D003618 ORTHO05D004302 1.2e-211 740.0 467 80.3
Ca_21917_v3 Cicer arietinum L. HOM05D003618 ORTHO05D004302 1.2e-211 740.0 470 79.1
A06p29560 Brassica napus HOM05D003618 ORTHO05D004302 1.5e-211 739.6 472 79.4
Glyma.17G089600 Glycine max HOM05D003618 ORTHO05D004302 2.0e-211 739.2 466 79.6
PSO170G5081 Papaver somniferum HOM05D003618 ORTHO05D004302 2.6e-211 738.8 465 79.8
CANSAT80G1130 Cannabis sativa HOM05D003618 ORTHO05D004302 4.4e-211 738.0 463 78.6
Hund02742 Selenicereus undatus HOM05D003618 ORTHO05D004302 4.4e-211 738.0 468 79.5
TPR.G37486 Trifolium pratense HOM05D003618 ORTHO05D004302 4.4e-211 738.0 468 78.8
AUR62008212 Chenopodium quinoa HOM05D003618 ORTHO05D004302 5.8e-211 737.6 464 79.3
Aqoxy3G02948 Aquilegia oxysepala HOM05D003618 ORTHO05D004302 9.8e-211 736.9 460 79.8
HanXRQChr09g0272201 Helianthus annuus HOM05D003618 ORTHO05D004302 1.3e-210 736.5 467 79.0
HanXRQChr05g0153451 Helianthus annuus HOM05D003618 ORTHO05D004302 1.7e-210 736.1 465 78.9
AUR62030965 Chenopodium quinoa HOM05D003618 ORTHO05D004302 2.2e-210 735.7 432 84.0
Lsat_1_v5_gn_5_14440 Lactuca sativa HOM05D003618 ORTHO05D004302 4.9e-210 734.6 467 78.8
PSO455G0039 Papaver somniferum HOM05D003618 ORTHO05D004302 4.9e-210 734.6 465 79.4
PGR083G1520 Punica granatum HOM05D003618 ORTHO05D004302 1.1e-209 733.4 458 79.9
ATR0730G147 Amborella trichopoda HOM05D003618 ORTHO05D004302 2.4e-209 732.3 469 78.5
CDE07G0194 Ceratophyllum demersum HOM05D003618 ORTHO05D004302 3.2e-209 731.9 465 78.1
Aa31LG11G890 Aethionema arabicum HOM05D003618 ORTHO05D004302 9.2e-209 730.3 466 78.3
Psat4g058000 Pisum sativum HOM05D003618 ORTHO05D004302 2.1e-208 729.2 467 78.8
BraA09t36436Z Brassica rapa HOM05D003618 ORTHO05D004302 7.8e-208 727.2 490 76.5
BcaC01g02522 Brassica carinata HOM05D003618 ORTHO05D004302 1.0e-207 726.9 476 77.7
C03p63940 Brassica napus HOM05D003618 ORTHO05D004302 1.0e-207 726.9 476 77.7
BolC3t18648H Brassica oleracea HOM05D003618 ORTHO05D004302 1.0e-207 726.9 476 77.7
BraA06t25902Z Brassica rapa HOM05D003618 ORTHO05D004302 5.0e-207 724.5 492 76.0
CANSAT80G1364 Cannabis sativa HOM05D003618 ORTHO05D004302 1.5e-206 723.0 463 76.7
MBI16_g32207_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 1.6e-205 719.5 465 79.4
Gohir.A11G001200 Gossypium hirsutum HOM05D003618 ORTHO05D004302 2.1e-205 719.2 468 77.6
PGSC0003DMG400024503 Solanum tuberosum HOM05D003618 ORTHO05D004302 3.6e-205 718.4 484 76.4
SEGI_37686 Sequoiadendron giganteum HOM05D003618 ORTHO05D004302 2.6e-203 712.2 475 76.6
MBI10_g14554_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 4.4e-203 711.4 465 78.1
HPP92_004862 Vanilla planifolia HOM05D003618 ORTHO05D004302 1.7e-202 709.5 465 77.8
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 1.4e-201 706.4 437 81.0
Gorai.007G001700 Gossypium raimondii HOM05D003618 ORTHO05D004302 1.4e-201 706.4 470 76.6
Aa31LG11G900 Aethionema arabicum HOM05D003618 ORTHO05D004302 3.2e-201 705.3 437 79.2
Lalb_Chr12g0209981 Lupinus albus HOM05D003618 ORTHO05D004302 4.1e-201 704.9 468 73.9
arahy.Tifrunner.gnm1.ann1.NJJ8BU Arachis hypogaea HOM05D003618 ORTHO05D004302 5.1e-199 698.0 465 73.3
arahy.Tifrunner.gnm1.ann1.5ZTX8H Arachis hypogaea HOM05D003618 ORTHO05D004302 2.5e-198 695.7 465 73.1
VMungo0331G0859 Vigna mungo HOM05D003618 ORTHO05D004302 2.5e-198 695.7 471 74.1
Glyma.16G089000 Glycine max HOM05D003618 ORTHO05D004302 4.3e-198 694.9 468 73.7
Ciclev10019836m.g Citrus clementina HOM05D003618 ORTHO05D004302 5.6e-198 694.5 431 78.9
Hund09436 Selenicereus undatus HOM05D003618 ORTHO05D004302 7.3e-198 694.1 464 74.1
Phvul.010G023000 Phaseolus vulgaris HOM05D003618 ORTHO05D004302 9.5e-198 693.7 468 73.7
Ca_23215_v3 Cicer arietinum L. HOM05D003618 ORTHO05D004302 1.5e-195 686.4 470 73.4
Lj3g0025861 Lotus japonicus HOM05D003618 ORTHO05D004302 1.5e-195 686.4 469 72.1
MBI10_g41914_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 2.2e-194 682.6 465 76.6
Medtr8g012565 Medicago truncatula HOM05D003618 ORTHO05D004302 4.9e-194 681.4 471 72.8
TPR.G31563 Trifolium pratense HOM05D003618 ORTHO05D004302 8.4e-194 680.6 472 72.0
Mapoly0034s0078 Marchantia polymorpha HOM05D003618 ORTHO05D004302 7.3e-190 667.5 418 78.0
Mapoly0064s0074 Marchantia polymorpha HOM05D003618 ORTHO05D004302 2.4e-188 662.5 424 75.2
Cpa.g.sc76.64 Carica papaya HOM05D003618 ORTHO05D004302 5.2e-188 661.4 373 87.1
Pp3c24_8730 Physcomitrium patens HOM05D003618 ORTHO05D004302 2.0e-187 659.4 459 72.1
SGA_v2.0_scaffold25G10843 Striga asiatica HOM05D003618 ORTHO05D004302 5.8e-187 657.9 433 75.5
Pp3c8_12290 Physcomitrium patens HOM05D003618 ORTHO05D004302 3.2e-185 652.1 415 76.4
SMO348G0015 Selaginella moellendorffii HOM05D003618 ORTHO05D004302 7.1e-185 651.0 436 71.6
Duzib068G0560 Durio zibethinus HOM05D003618 ORTHO05D004302 1.1e-182 643.7 374 84.0
HanXRQChr16g0517311 Helianthus annuus HOM05D003618 ORTHO05D004302 7.3e-182 641.0 472 69.3
CDE06G1773 Ceratophyllum demersum HOM05D003618 ORTHO05D004302 5.6e-174 614.8 465 69.5
Dinv02897 Davidia involucrata HOM05D003618 ORTHO05D004302 2.1e-173 612.8 371 81.7
Aa31sc1732G20 Aethionema arabicum HOM05D003618 ORTHO05D004302 1.4e-172 610.1 406 75.4
CBR_g11924 Chara braunii HOM05D003618 ORTHO05D004302 1.6e-168 596.7 419 70.2
Aa31sc1732G10 Aethionema arabicum HOM05D003618 ORTHO05D004302 6.9e-164 581.3 326 86.5
CAN.G781.11 Capsicum annuum HOM05D003618 ORTHO05D004302 1.1e-161 573.9 318 87.7
Cre12.g546050 Chlamydomonas reinhardtii HOM05D003618 ORTHO05D004302 1.4e-161 573.5 408 67.9
HanXRQChr05g0156211 Helianthus annuus HOM05D003618 ORTHO05D004302 1.3e-159 567.0 332 83.7
Sabra12G0057700 Salix brachista HOM05D003618 ORTHO05D004302 7.4e-150 534.6 482 62.2
PRCOL_00002139 Prasinoderma coloniale HOM05D003618 ORTHO05D004302 9.7e-150 534.3 417 63.8
Cc00_g09910 Coffea canephora HOM05D003618 ORTHO05D004302 3.1e-132 476.1 296 78.7
MCO15G646 Micromonas commoda HOM05D003618 ORTHO05D004302 2.2e-130 469.9 350 64.6
AagrBONN_evm.TU.Sc2ySwM_228.1199 Anthoceros agrestis HOM05D003618 ORTHO05D004302 2.4e-124 449.9 318 73.6
Sc12g0005340 Simmondsia chinensis HOM05D003618 ORTHO05D004302 3.2e-121 439.5 296 75.7
Psat4g204400 Pisum sativum HOM05D003618 ORTHO05D004302 1.2e-107 394.4 298 68.8
Actinidia33067 Actinidia chinensis HOM05D003618 ORTHO05D004302 5.9e-107 392.1 257 78.2
Zm00001eb334380 Zea mays HOM05D003618 ORTHO05D004302 1.8e-95 354.0 186 90.3
Gohir.D11G000766 Gossypium hirsutum HOM05D003618 ORTHO05D004302 9.2e-92 341.7 185 85.9
Sc12g0005330 Simmondsia chinensis HOM05D003618 ORTHO05D004302 2.7e-83 313.5 174 82.8
FvH4_4g01210 Fragaria vesca HOM05D003618 ORTHO05D004302 2.3e-82 310.5 251 66.1
Zm00001eb334370 Zea mays HOM05D003618 ORTHO05D004302 5.1e-82 309.3 230 71.3
Gohir.D11G000832 Gossypium hirsutum HOM05D003618 ORTHO05D004302 3.1e-71 273.5 226 66.8
Cc04_g14070 Coffea canephora HOM05D003618 ORTHO05D004302 1.4e-60 238.0 225 57.8
VMungo0647G0692 Vigna mungo HOM05D003618 ORTHO05D004302 5.4e-60 236.1 159 78.0
Hund09437 Selenicereus undatus HOM05D003618 ORTHO05D004302 1.6e-59 234.6 376 42.0
Lsat_1_v5_gn_0_46101 Lactuca sativa HOM05D003618 ORTHO05D004302 2.7e-59 233.8 363 37.2
FvH4_3g27741 Fragaria vesca HOM05D003618 ORTHO05D004302 6.0e-59 232.6 134 86.6
FvH4_1g09716 Fragaria vesca HOM05D003618 ORTHO05D004302 3.7e-48 196.8 153 69.3
FvH4_1g09717 Fragaria vesca HOM05D003618 ORTHO05D004302 5.3e-31 139.8 71 90.1
FAN09G3822 Fragaria x ananassa HOM05D003618 ORTHO05D004302 9.4e-28 129.0 121 57.9
DCAR_016639 Daucus carota HOM05D003618 ORTHO05D003669 2.7e-27 127.5 75 84.0
RcHm_v2.0_Chr2g0151191 Rosa chinensis HOM05D001812 ORTHO05D004302 2.4e-23 114.4 73 76.7
RcHm_v2.0_Chr1g0360281 Rosa chinensis HOM05D003618 ORTHO05D004302 4.1e-23 113.6 73 75.3
Hma1.2p1_0549F.1_g176800 Hydrangea macrophylla HOM05D003618 ORTHO05D004302 1.7e-13 81.6 49 85.7
SGA_v2.0_scaffold45G17201 Striga asiatica HOM05D003618 ORTHO05D404764 8.0e-11 72.8 169 38.5
Cc00_g21160 Coffea canephora HOM05D003618 ORTHO05D153345 2.8e-08 64.3 48 64.6
CSS0007150 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 6.3e-08 63.2 56 58.9
CSS0047950 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 6.3e-08 63.2 56 58.9
Cc00_g09880 Coffea canephora HOM05D003618 ORTHO05D004302 5.4e-07 60.1 38 76.3
CSS0042990 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 3.5e-06 57.4 50 60.0
TAR636G2683 Trochodendron aralioides HOM05D003618 ORTHO05D415275 7.7e-06 56.2 43 69.8


User provided reference genes

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