Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H02243 Erythranthe guttata HOM05D004769 ORTHO05D005605 4.8e-190 667.9 404 100.0
Cc07_g12960 Coffea canephora HOM05D004769 ORTHO05D005605 2.1e-145 519.6 415 78.1
MSTRG.3686 Avicennia marina HOM05D004769 ORTHO05D005605 1.7e-142 510.0 428 77.1
Oeu032315.1 Olea europaea HOM05D004769 ORTHO05D005605 3.8e-134 482.3 488 66.0
Oeu029083.1 Olea europaea HOM05D004769 ORTHO05D005605 1.6e-132 476.9 481 68.2
Actinidia35715 Actinidia chinensis HOM05D004769 ORTHO05D005605 1.0e-131 474.2 415 71.8
Lj4A255T24 Lonicera japonica HOM05D004769 ORTHO05D005605 4.3e-130 468.8 400 74.8
Lsat_1_v5_gn_8_18601 Lactuca sativa HOM05D004769 ORTHO05D005605 5.6e-130 468.4 396 74.2
Dinv19070 Davidia involucrata HOM05D004769 ORTHO05D005605 1.6e-129 466.8 425 71.3
Hma1.2p1_0158F.1_g069800 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 1.6e-129 466.8 409 70.2
ECA233G3826 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.1e-128 464.2 387 75.5
SGA_v2.0_scaffold45G17131 Striga asiatica HOM05D004769 ORTHO05D005605 1.1e-128 464.2 404 73.8
unitig_748.g7024 Utricularia gibba HOM05D004769 ORTHO05D005605 2.6e-127 459.5 242 92.6
Nitab4.5_0000574g0160 Nicotiana tabacum HOM05D004769 ORTHO05D005605 4.4e-127 458.8 438 71.5
Peaxi162Scf00442g00627 Petunia axillaris HOM05D004769 ORTHO05D005605 5.8e-127 458.4 428 73.4
CAN.G525.4 Capsicum annuum HOM05D004769 ORTHO05D005605 4.2e-125 452.2 438 70.1
Sopen04g006720 Solanum pennellii HOM05D004769 ORTHO05D005605 4.2e-125 452.2 441 69.8
PGSC0003DMG400023617 Solanum tuberosum HOM05D004769 ORTHO05D005605 7.1e-125 451.4 441 68.5
Solyc04g014560.4 Solanum lycopersicum HOM05D004769 ORTHO05D005605 3.5e-124 449.1 451 68.3
SGA_v2.0_scaffold115G32089 Striga asiatica HOM05D004769 ORTHO05D005605 7.8e-124 448.0 404 72.3
HanXRQChr08g0218471 Helianthus annuus HOM05D004769 ORTHO05D005605 1.0e-123 447.6 403 73.9
TAR375G0174 Trochodendron aralioides HOM05D004769 ORTHO05D005605 3.9e-123 445.7 405 65.9
CiPaw.03G077600 Carya illinoinensis HOM05D004769 ORTHO05D005605 8.7e-123 444.5 446 67.7
PGR042G1215 Punica granatum HOM05D004769 ORTHO05D005605 1.9e-122 443.4 429 72.3
Hma1.2p1_0034F.1_g021310 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 5.6e-122 441.8 394 74.4
GSVIVG01026312001 Vitis vinifera HOM05D004769 ORTHO05D005605 5.6e-122 441.8 408 70.1
Haze_14305 Corylus avellana HOM05D004769 ORTHO05D005605 6.2e-121 438.3 444 66.9
Atru.chr1.1954 Acer truncatum HOM05D004769 ORTHO05D005605 8.1e-121 438.0 419 70.9
Sc11g0004750 Simmondsia chinensis HOM05D004769 ORTHO05D005605 8.1e-121 438.0 422 69.9
Cpa.g.sc178.7 Carica papaya HOM05D004769 ORTHO05D005605 9.0e-120 434.5 456 62.7
Cfa007768 Carpinus fangiana HOM05D004769 ORTHO05D005605 1.2e-119 434.1 443 69.5
CSS0001926 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 1.5e-119 433.7 262 81.3
TWI74G1557 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 1.5e-119 433.7 428 69.4
Medtr5g077180 Medicago truncatula HOM05D004769 ORTHO05D005605 2.0e-119 433.3 432 69.4
THA.LOC104823824 Tarenaya hassleriana HOM05D004769 ORTHO05D005605 2.0e-119 433.3 424 67.5
EL10Ac6g13916 Beta vulgaris HOM05D004769 ORTHO05D005605 3.8e-118 429.1 457 64.6
C04p44180 Brassica napus HOM05D004769 ORTHO05D005605 8.4e-118 427.9 411 66.9
BolC4t25993H Brassica oleracea HOM05D004769 ORTHO05D005605 1.9e-117 426.8 426 63.8
Thecc.04G060900 Theobroma cacao HOM05D004769 ORTHO05D005605 3.2e-117 426.0 448 66.3
Lalb_Chr17g0345901 Lupinus albus HOM05D004769 ORTHO05D005605 5.4e-117 425.2 440 67.7
MBI04_g35346_MAGBIO Magnolia biondii HOM05D004769 ORTHO05D005605 1.2e-116 424.1 429 67.1
Potri.004G075700 Populus trichocarpa HOM05D004769 ORTHO05D005605 1.2e-116 424.1 431 67.7
Aqoxy5G00268 Aquilegia oxysepala HOM05D004769 ORTHO05D005605 1.6e-116 423.7 416 63.5
Ca_05772_v3 Cicer arietinum L. HOM05D004769 ORTHO05D005605 2.7e-116 422.9 405 60.7
AL7G46000 Arabidopsis lyrata HOM05D004769 ORTHO05D005605 6.0e-116 421.8 407 70.3
Prupe.1G069400 Prunus persica HOM05D004769 ORTHO05D005605 1.8e-115 420.2 439 64.2
TPR.G9995 Trifolium pratense HOM05D004769 ORTHO05D005605 3.0e-115 419.5 437 67.3
Rhsim10G0183300 Rhododendron simsii HOM05D004769 ORTHO05D005605 3.9e-115 419.1 403 71.5
CANSAT78G2338 Cannabis sativa HOM05D004769 ORTHO05D005605 8.7e-115 417.9 441 67.3
Nn1g02020 Nelumbo nucifera HOM05D004769 ORTHO05D005605 8.7e-115 417.9 429 67.8
PSO017G5633 Papaver somniferum HOM05D004769 ORTHO05D005605 1.1e-114 417.5 450 64.9
Migut.K01113 Erythranthe guttata HOM05D004769 ORTHO05D005605 2.5e-114 416.4 367 71.9
Potri.017G144121 Populus trichocarpa HOM05D004769 ORTHO05D005605 3.3e-114 416.0 440 66.6
VMungo0647G0921 Vigna mungo HOM05D004769 ORTHO05D005605 5.6e-114 415.2 447 67.1
A04p10540 Brassica napus HOM05D004769 ORTHO05D005605 7.4e-114 414.8 404 68.6
Lj2C513G15 Lonicera japonica HOM05D004769 ORTHO05D005605 9.6e-114 414.5 397 57.7
Phvul.008G239200 Phaseolus vulgaris HOM05D004769 ORTHO05D005605 1.3e-113 414.1 438 68.3
Glyma.14G211600 Glycine max HOM05D004769 ORTHO05D005605 2.1e-113 413.3 445 66.5
Os05g0178900 Oryza sativa ssp. japonica HOM05D004769 ORTHO05D005605 2.1e-113 413.3 442 65.6
COL.COLO4_05842 Corchorus olitorius HOM05D004769 ORTHO05D005605 2.8e-113 412.9 403 60.0
TWI77G0470 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 4.8e-113 412.1 431 69.1
MELO3C025080.2 Cucumis melo HOM05D004769 ORTHO05D005605 8.1e-113 411.4 256 81.2
Sed0006929 Sechium edule HOM05D004769 ORTHO05D005605 1.8e-112 410.2 448 67.4
DCAR_028435 Daucus carota HOM05D004769 ORTHO05D005605 2.4e-112 409.8 255 79.2
Thhalv10027788m.g Eutrema salsugineum HOM05D004769 ORTHO05D005605 2.4e-112 409.8 413 70.2
Sp7g05100 Schrenkiella parvula HOM05D004769 ORTHO05D005605 4.0e-112 409.1 407 60.2
BraA04t16720Z Brassica rapa HOM05D004769 ORTHO05D005605 5.3e-112 408.7 408 68.1
HPP92_017811 Vanilla planifolia HOM05D004769 ORTHO05D005605 6.9e-112 408.3 410 65.9
BcaC02g09560 Brassica carinata HOM05D004769 ORTHO05D005605 2.6e-111 406.4 426 62.4
FvH4_4g06670 Fragaria vesca HOM05D004769 ORTHO05D005605 2.6e-111 406.4 425 63.1
RcHm_v2.0_Chr4g0398571 Rosa chinensis HOM05D004769 ORTHO05D005605 2.6e-111 406.4 419 67.5
Sabra04G0050400 Salix brachista HOM05D004769 ORTHO05D005605 2.6e-111 406.4 442 61.8
Carub.0007s3249 Capsella rubella HOM05D004769 ORTHO05D005605 4.5e-111 405.6 411 66.9
AUR62017457 Chenopodium quinoa HOM05D004769 ORTHO05D005605 4.5e-111 405.6 403 61.5
ClCG01G008650 Citrullus lanatus HOM05D004769 ORTHO05D005605 5.8e-111 405.2 443 66.6
Gohir.D08G062500 Gossypium hirsutum HOM05D004769 ORTHO05D005605 9.9e-111 404.4 424 68.9
TAR374G1377 Trochodendron aralioides HOM05D004769 ORTHO05D005605 9.9e-111 404.4 426 61.7
Gorai.004G064700 Gossypium raimondii HOM05D004769 ORTHO05D005605 1.7e-110 403.7 423 68.8
ATR0083G043 Amborella trichopoda HOM05D004769 ORTHO05D005605 2.9e-110 402.9 418 67.0
Gohir.A08G052900 Gossypium hirsutum HOM05D004769 ORTHO05D005605 6.4e-110 401.7 429 67.8
Glyma.02G241900 Glycine max HOM05D004769 ORTHO05D005605 8.4e-110 401.4 480 61.5
MD13G1237000 Malus domestica HOM05D004769 ORTHO05D005605 1.4e-109 400.6 415 65.5
QL02p060102 Quercus lobata HOM05D004769 ORTHO05D005605 1.2e-108 397.5 525 56.6
vmacro20487 Vaccinium macrocarpon HOM05D004769 ORTHO05D005605 2.1e-108 396.7 403 68.7
CsaV3_5G020660 Cucumis sativus L. HOM05D004769 ORTHO05D005605 6.0e-108 395.2 443 65.9
FAN07G0829 Fragaria x ananassa HOM05D004769 ORTHO05D005605 7.9e-108 394.8 405 64.9
Zm00001eb377290 Zea mays HOM05D004769 ORTHO05D005605 1.3e-107 394.0 415 56.1
Ah.02g128700 Amaranthus hybridus HOM05D004769 ORTHO05D005605 1.8e-107 393.7 512 55.7
MD16G1242400 Malus domestica HOM05D004769 ORTHO05D005605 1.8e-107 393.7 415 66.3
AUR62032521 Chenopodium quinoa HOM05D004769 ORTHO05D005605 6.7e-107 391.7 388 57.5
Lalb_Chr04g0251441 Lupinus albus HOM05D004769 ORTHO05D005605 6.7e-107 391.7 432 64.8
FAN17G2568 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.9e-106 390.2 405 64.9
FAN22G0974 Fragaria x ananassa HOM05D004769 ORTHO05D005605 2.5e-106 389.8 402 66.4
FAN12G3741 Fragaria x ananassa HOM05D004769 ORTHO05D005605 2.1e-105 386.7 399 66.2
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 2.8e-105 386.3 391 66.0
arahy.Tifrunner.gnm1.ann1.SAK0JK Arachis hypogaea HOM05D004769 ORTHO05D005605 4.5e-103 379.0 476 60.9
CARHR215720 Cardamine hirsuta HOM05D004769 ORTHO05D005605 2.8e-97 359.8 360 68.6
Mapoly0017s0020 Marchantia polymorpha HOM05D004769 ORTHO05D005605 3.4e-95 352.8 230 72.6
CBR_g22246 Chara braunii HOM05D004769 ORTHO05D005605 4.5e-95 352.4 258 69.8
MapolyY_B0025 Marchantia polymorpha HOM05D004769 ORTHO05D005605 6.5e-94 348.6 253 68.0
LjContig00141g0012428 Lotus japonicus HOM05D004769 ORTHO05D005605 1.1e-93 347.8 450 49.3
Pp3c14_14980 Physcomitrium patens HOM05D004769 ORTHO05D005605 1.4e-93 347.4 225 71.6
Pp3c14_14989 Physcomitrium patens HOM05D004769 ORTHO05D005605 1.4e-93 347.4 225 71.6
PSO170G3102 Papaver somniferum HOM05D004769 ORTHO05D005605 3.9e-91 339.3 391 63.4
SMO351G0501 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 5.7e-90 335.5 427 53.9
Eucgr.J01630 Eucalyptus grandis HOM05D004769 ORTHO05D005605 5.3e-88 328.9 390 66.4
Dinv28230 Davidia involucrata HOM05D004769 ORTHO05D005605 2.0e-79 300.4 320 66.9
CDE02G3274 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 4.7e-76 289.3 154 85.1
Lalb_Chr10g0104091 Lupinus albus HOM05D004769 ORTHO05D005605 9.1e-72 275.0 148 83.1
Nitab4.5_0005193g0040 Nicotiana tabacum HOM05D004769 ORTHO05D005605 4.5e-71 272.7 341 65.4
Pp3c17_5870 Physcomitrium patens HOM05D004769 ORTHO05D005605 6.5e-70 268.9 387 56.3
CDE02G0598 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 6.3e-65 252.3 136 83.1
Cre03.g178300 Chlamydomonas reinhardtii HOM05D004769 ORTHO05D005605 8.0e-60 235.3 248 53.2
Ciclev10018227m.g Citrus clementina HOM05D004769 ORTHO05D005605 4.0e-59 233.0 146 76.7
PRCOL_00000163 Prasinoderma coloniale HOM05D004769 ORTHO05D005605 8.8e-59 231.9 211 55.0
MCO07G113 Micromonas commoda HOM05D004769 ORTHO05D005605 1.2e-58 231.5 228 50.9
Sed0026946 Sechium edule HOM05D004769 ORTHO05D005605 1.2e-58 231.5 347 60.2
Oeu048972.1 Olea europaea HOM05D004769 ORTHO05D005605 3.4e-58 229.9 114 94.7
CDE02G1258 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 5.7e-58 229.2 295 63.1
SEGI_40758 Sequoiadendron giganteum HOM05D004769 ORTHO05D005605 5.0e-54 216.1 150 71.3
Ciclev10015797m.g Citrus clementina HOM05D004769 ORTHO05D005605 4.2e-53 213.0 351 57.0
Lj1g0013060 Lotus japonicus HOM05D004769 ORTHO05D005605 2.1e-52 210.7 174 62.6
Zm00001eb283000 Zea mays HOM05D004769 ORTHO05D005605 2.8e-52 210.3 330 53.0
Duzib211G0206 Durio zibethinus HOM05D004769 ORTHO05D005605 1.7e-49 201.1 324 58.3
AT5G37370 Arabidopsis thaliana HOM05D004769 ORTHO05D005605 1.5e-45 188.0 276 61.6
Manes.02G080000 Manihot esculenta HOM05D004769 ORTHO05D005605 2.8e-44 183.7 319 59.2
CSS0045560 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 2.3e-43 180.6 96 82.3
Sed0001997 Sechium edule HOM05D004769 ORTHO05D005605 4.4e-42 176.4 101 80.2
Aa31LG9G17630 Aethionema arabicum HOM05D004769 ORTHO05D005605 1.6e-39 167.9 98 80.6
Gohir.A02G124601 Gossypium hirsutum HOM05D004769 ORTHO05D005605 2.0e-39 167.5 96 81.2
Psat2g044720 Pisum sativum HOM05D004769 ORTHO05D005605 1.5e-37 161.4 294 60.5
Zm00001eb361740 Zea mays HOM05D004769 ORTHO05D005605 7.3e-37 159.1 96 79.2
SMO231G0020 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 9.5e-37 158.7 130 57.7
SMO231G0026 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 8.0e-36 155.6 390 40.3
Lalb_Chr10g0104101 Lupinus albus HOM05D004769 ORTHO05D005605 5.2e-35 152.9 291 56.4
Zm00001eb046660 Zea mays HOM05D004769 ORTHO05D005605 2.2e-33 147.5 84 78.6
Zm00001eb221230 Zea mays HOM05D004769 ORTHO05D005605 1.9e-32 144.4 83 78.3
CSS0036345 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 4.1e-32 143.3 269 60.6
HanXRQChr14g0429111 Helianthus annuus HOM05D004769 ORTHO05D005605 3.5e-31 140.2 80 82.5
Gohir.A11G193800 Gossypium hirsutum HOM05D004769 ORTHO05D005605 3.9e-30 136.7 85 77.6
HanXRQChr14g0429051 Helianthus annuus HOM05D004769 ORTHO05D005605 1.5e-29 134.8 80 80.0
MD01G1153700 Malus domestica HOM05D004769 ORTHO05D005605 4.0e-27 126.7 79 75.9
CDE02G3573 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 1.2e-23 115.2 233 47.2
ATR0127G005 Amborella trichopoda HOM05D004769 ORTHO05D005605 3.5e-23 113.6 77 76.6
Actinidia28787 Actinidia chinensis HOM05D004769 ORTHO05D005605 1.7e-22 111.3 299 50.5
Gohir.A08G086562 Gossypium hirsutum HOM05D004769 ORTHO05D005605 3.3e-21 107.1 83 66.3
FAN07G1815 Fragaria x ananassa HOM05D004769 ORTHO05D005605 4.3e-21 106.7 235 59.1
Lj2g0009880 Lotus japonicus HOM05D004769 ORTHO05D005605 4.7e-20 103.2 74 63.5
FAN05G2233 Fragaria x ananassa HOM05D004769 ORTHO05D005605 8.9e-19 99.0 240 55.4
Lj1g0013083 Lotus japonicus HOM05D004769 ORTHO05D005605 2.6e-18 97.4 68 63.2
HanXRQChr08g0224021 Helianthus annuus HOM05D004769 ORTHO05D005605 8.4e-17 92.4 60 75.0
Zm00001eb313200 Zea mays HOM05D004769 ORTHO05D005605 6.2e-12 76.3 43 83.7
SMO351G0097 Selaginella moellendorffii HOM05D007698 ORTHO05D009663 8.1e-12 75.9 75 49.3
FAN23G0276 Fragaria x ananassa HOM05D004769 ORTHO05D005605 8.7e-06 55.8 60 53.3


User provided reference genes

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