Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H01558 Erythranthe guttata HOM05D005787 ORTHO05D007011 3.0e-287 991.1 484 100.0
SalBow1G7047 Salvia bowleyana HOM05D005787 ORTHO05D007011 9.4e-225 783.5 482 79.0
Oeu015733.1 Olea europaea HOM05D005787 ORTHO05D007011 2.3e-210 735.7 483 74.3
Dinv20032 Davidia involucrata HOM05D005787 ORTHO05D007011 3.6e-208 728.4 482 73.4
Cc09_g01960 Coffea canephora HOM05D005787 ORTHO05D007011 2.7e-203 712.2 491 70.5
TAR624G0905 Trochodendron aralioides HOM05D005787 ORTHO05D007011 2.5e-201 705.7 480 72.3
SGA_v2.0_scaffold89G27454 Striga asiatica HOM05D005787 ORTHO05D007011 4.7e-200 701.4 482 72.8
GSVIVG01012651001 Vitis vinifera HOM05D005787 ORTHO05D007011 3.2e-196 688.7 479 71.2
FAN25G2524 Fragaria x ananassa HOM05D005787 ORTHO05D007011 4.6e-195 684.9 481 68.8
PSO541G2671 Papaver somniferum HOM05D005787 ORTHO05D007011 4.6e-195 684.9 485 67.6
FvH4_3g02480 Fragaria vesca HOM05D005787 ORTHO05D007011 1.7e-194 682.9 482 68.5
Lj1C1227T21 Lonicera japonica HOM05D005787 ORTHO05D007011 3.9e-194 681.8 408 78.2
Prupe.4G024200 Prunus persica HOM05D005787 ORTHO05D007011 1.5e-193 679.9 477 68.8
PGSC0003DMG400002087 Solanum tuberosum HOM05D005787 ORTHO05D007011 1.9e-193 679.5 485 67.4
Cpa.g.sc198.22 Carica papaya HOM05D005787 ORTHO05D007011 2.5e-193 679.1 482 67.8
Actinidia11846 Actinidia chinensis HOM05D005787 ORTHO05D007011 3.3e-193 678.7 465 71.0
Atru.chr10.2171 Acer truncatum HOM05D005787 ORTHO05D007011 9.5e-193 677.2 463 70.2
RcHm_v2.0_Chr5g0003731 Rosa chinensis HOM05D005787 ORTHO05D007011 4.7e-192 674.9 464 69.6
Haze_06771 Corylus avellana HOM05D005787 ORTHO05D007011 6.2e-192 674.5 477 69.2
Manes.16G010400 Manihot esculenta HOM05D005787 ORTHO05D007011 6.2e-192 674.5 460 70.2
QL05p074231 Quercus lobata HOM05D005787 ORTHO05D007011 1.4e-191 673.3 477 68.8
Lj6g0006260 Lotus japonicus HOM05D005787 ORTHO05D007011 3.1e-191 672.2 476 68.3
vmacro15819 Vaccinium macrocarpon HOM05D005787 ORTHO05D007011 5.2e-191 671.4 480 68.1
Potri.004G019100 Populus trichocarpa HOM05D005787 ORTHO05D007011 1.5e-190 669.8 457 69.8
Ciclev10015055m.g Citrus clementina HOM05D005787 ORTHO05D007011 4.4e-190 668.3 490 66.5
Solyc02g080320.4 Solanum lycopersicum HOM05D005787 ORTHO05D007011 4.4e-190 668.3 485 65.8
Sopen02g025020 Solanum pennellii HOM05D005787 ORTHO05D007011 7.5e-190 667.5 485 66.0
Glyma.13G206600 Glycine max HOM05D005787 ORTHO05D007011 2.2e-189 666.0 474 66.9
Nn1g07089 Nelumbo nucifera HOM05D005787 ORTHO05D007011 2.9e-189 665.6 482 66.4
TPR.G7642 Trifolium pratense HOM05D005787 ORTHO05D007011 2.4e-188 662.5 476 67.9
VMungo0540G0861 Vigna mungo HOM05D005787 ORTHO05D007011 2.1e-187 659.4 474 66.7
Thecc.06G217000 Theobroma cacao HOM05D005787 ORTHO05D007011 3.5e-187 658.7 466 68.5
Glyma.15G106100 Glycine max HOM05D005787 ORTHO05D007011 4.6e-187 658.3 473 66.0
Medtr2g022770 Medicago truncatula HOM05D005787 ORTHO05D007011 7.8e-187 657.5 473 67.0
Rhsim02G0110900 Rhododendron simsii HOM05D005787 ORTHO05D007011 1.3e-186 656.8 482 67.6
Phvul.006G151200 Phaseolus vulgaris HOM05D005787 ORTHO05D007011 2.3e-186 656.0 474 66.5
PGR042G0837 Punica granatum HOM05D005787 ORTHO05D007011 2.3e-186 656.0 487 65.9
CSS0006555 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 3.0e-186 655.6 501 65.7
CANSAT56G2549 Cannabis sativa HOM05D005787 ORTHO05D007011 3.0e-186 655.6 483 66.9
Gohir.D05G171800 Gossypium hirsutum HOM05D005787 ORTHO05D007011 6.6e-186 654.4 478 67.2
Gorai.009G176900 Gossypium raimondii HOM05D005787 ORTHO05D007011 6.6e-186 654.4 478 67.2
Ca_00626_v3 Cicer arietinum L. HOM05D005787 ORTHO05D007011 8.6e-186 654.1 473 66.8
Psat1g182520 Pisum sativum HOM05D005787 ORTHO05D007011 2.5e-185 652.5 473 67.0
CsaV3_1G010950 Cucumis sativus L. HOM05D005787 ORTHO05D007011 7.3e-185 651.0 478 67.4
Peaxi162Scf00262g00038 Petunia axillaris HOM05D005787 ORTHO05D007011 9.5e-185 650.6 482 66.6
Sabra04G0010700 Salix brachista HOM05D005787 ORTHO05D007011 1.2e-184 650.2 399 74.9
Sed0015393 Sechium edule HOM05D005787 ORTHO05D007011 1.6e-184 649.8 473 67.0
Lj6g0025395 Lotus japonicus HOM05D005787 ORTHO05D007011 2.8e-184 649.0 469 66.7
MD10G1317600 Malus domestica HOM05D005787 ORTHO05D007011 4.7e-184 648.3 399 74.9
Aa31LG6G3750 Aethionema arabicum HOM05D005787 ORTHO05D007011 8.1e-184 647.5 460 67.0
Sp7g19940 Schrenkiella parvula HOM05D005787 ORTHO05D007011 8.1e-184 647.5 477 65.8
Gohir.A05G168600 Gossypium hirsutum HOM05D005787 ORTHO05D007011 1.8e-183 646.4 489 65.8
Aqoxy1G03304 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 2.4e-183 646.0 477 67.1
CAN.G569.24 Capsicum annuum HOM05D005787 ORTHO05D007011 4.0e-183 645.2 485 64.3
THA.LOC104812988 Tarenaya hassleriana HOM05D005787 ORTHO05D007011 4.0e-183 645.2 460 67.4
Nitab4.5_0003893g0010 Nicotiana tabacum HOM05D005787 ORTHO05D007011 2.6e-182 642.5 483 65.2
Lalb_Chr18g0056211 Lupinus albus HOM05D005787 ORTHO05D007011 6.4e-181 637.9 472 65.7
Hund21387 Selenicereus undatus HOM05D005787 ORTHO05D007011 8.4e-181 637.5 441 67.6
CARHR228510 Cardamine hirsuta HOM05D005787 ORTHO05D007011 1.1e-180 637.1 468 66.5
Eucgr.E04102 Eucalyptus grandis HOM05D005787 ORTHO05D007011 1.1e-180 637.1 423 72.3
BcaC09g51204 Brassica carinata HOM05D005787 ORTHO05D007011 1.9e-180 636.3 464 65.7
A01p13100 Brassica napus HOM05D005787 ORTHO05D007011 1.9e-180 636.3 469 65.2
BraA01t01253Z Brassica rapa HOM05D005787 ORTHO05D007011 3.2e-180 635.6 469 65.5
Psat0s341g0040 Pisum sativum HOM05D005787 ORTHO05D007011 3.5e-179 632.1 472 63.8
C01p15790 Brassica napus HOM05D005787 ORTHO05D007011 4.6e-179 631.7 466 65.2
BolC1t01532H Brassica oleracea HOM05D005787 ORTHO05D007011 4.6e-179 631.7 466 65.2
AT4G21770 Arabidopsis thaliana HOM05D005787 ORTHO05D007011 7.8e-179 630.9 463 65.2
ATR0752G095 Amborella trichopoda HOM05D005787 ORTHO05D007011 2.3e-178 629.4 476 64.3
Lsat_1_v5_gn_1_122000 Lactuca sativa HOM05D005787 ORTHO05D007011 2.3e-178 629.4 485 64.1
arahy.Tifrunner.gnm1.ann1.J4BAYR Arachis hypogaea HOM05D005787 ORTHO05D007011 3.0e-178 629.0 464 64.0
CsaV3_1G010930 Cucumis sativus L. HOM05D005787 ORTHO05D007011 3.0e-178 629.0 476 66.0
BcaNung02245 Brassica carinata HOM05D005787 ORTHO05D007011 3.9e-178 628.6 465 65.4
ClCG03G004890 Citrullus lanatus HOM05D005787 ORTHO05D007011 6.6e-178 627.9 493 64.3
arahy.Tifrunner.gnm1.ann1.N0U7LY Arachis hypogaea HOM05D005787 ORTHO05D007011 5.6e-177 624.8 474 64.1
AUR62021985 Chenopodium quinoa HOM05D005787 ORTHO05D007011 7.3e-177 624.4 454 65.2
TPR.G33224 Trifolium pratense HOM05D005787 ORTHO05D007011 2.1e-176 622.9 443 66.4
Medtr7g113450 Medicago truncatula HOM05D005787 ORTHO05D007011 6.2e-176 621.3 411 70.8
AL7G32160 Arabidopsis lyrata HOM05D005787 ORTHO05D007011 3.1e-175 619.0 467 64.5
Lalb_Chr18g0056221 Lupinus albus HOM05D005787 ORTHO05D007011 3.1e-175 619.0 435 67.6
AUR62012669 Chenopodium quinoa HOM05D005787 ORTHO05D007011 4.0e-175 618.6 454 65.2
Thhalv10025093m.g Eutrema salsugineum HOM05D005787 ORTHO05D007011 1.2e-174 617.1 466 64.4
EL10Ac8g20016 Beta vulgaris HOM05D005787 ORTHO05D007011 2.6e-174 615.9 490 60.6
ECA248G2950 Erigeron canadensis HOM05D005787 ORTHO05D007011 7.6e-174 614.4 468 63.5
HanXRQChr01g0003621 Helianthus annuus HOM05D005787 ORTHO05D007011 4.9e-173 611.7 456 64.3
Carub.0007s1963 Capsella rubella HOM05D005787 ORTHO05D007011 2.4e-172 609.4 394 71.6
AUR62012670 Chenopodium quinoa HOM05D005787 ORTHO05D007011 1.9e-169 599.7 403 67.2
HanXRQChr05g0138101 Helianthus annuus HOM05D005787 ORTHO05D007011 3.3e-169 599.0 414 68.4
Lsat_1_v5_gn_1_128660 Lactuca sativa HOM05D005787 ORTHO05D007011 4.8e-168 595.1 478 61.9
unitig_0.g957 Utricularia gibba HOM05D005787 ORTHO05D007011 1.4e-167 593.6 357 75.1
DCAR_024937 Daucus carota HOM05D005787 ORTHO05D007011 5.3e-167 591.7 352 77.6
Ah.09g235150 Amaranthus hybridus HOM05D005787 ORTHO05D007011 1.3e-165 587.0 467 62.1
Hund21388 Selenicereus undatus HOM05D005787 ORTHO05D007011 4.9e-165 585.1 383 67.9
MELO3C002471.2 Cucumis melo HOM05D005787 ORTHO05D007011 1.9e-164 583.2 417 68.8
Zm00001eb110780 Zea mays HOM05D005787 ORTHO05D007011 1.2e-163 580.5 418 64.6
Ah.09g235140 Amaranthus hybridus HOM05D005787 ORTHO05D007011 1.6e-163 580.1 411 64.2
MD10G1317000 Malus domestica HOM05D005787 ORTHO05D007011 1.0e-162 577.4 425 66.1
MELO3C002473.2 Cucumis melo HOM05D005787 ORTHO05D007011 2.5e-161 572.8 360 75.6
AUR62021984 Chenopodium quinoa HOM05D005787 ORTHO05D007011 4.3e-161 572.0 411 63.7
EL10Ac8g20017 Beta vulgaris HOM05D005787 ORTHO05D007011 5.8e-158 561.6 455 58.9
MBI02_g15259_MAGBIO Magnolia biondii HOM05D005787 ORTHO05D007011 2.5e-153 546.2 486 58.6
HPP92_013307 Vanilla planifolia HOM05D005787 ORTHO05D007011 1.5e-150 537.0 355 67.3
CiPaw.09G089100 Carya illinoinensis HOM05D005787 ORTHO05D007011 4.9e-149 531.9 361 70.4
Sc05g0009040 Simmondsia chinensis HOM05D005787 ORTHO05D007011 3.5e-147 525.8 397 63.2
CiPaw.10G069200 Carya illinoinensis HOM05D005787 ORTHO05D007011 1.4e-143 513.8 370 65.1
ECA248G3226 Erigeron canadensis HOM05D005787 ORTHO05D007011 6.9e-143 511.5 395 63.0
Aqoxy92s001 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 1.4e-127 460.7 447 55.5
Pp3c5_11180 Physcomitrium patens HOM05D005787 ORTHO05D007011 1.3e-125 454.1 398 55.0
SMO200G0166 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 1.4e-124 450.7 404 51.5
Mapoly0146s0040 Marchantia polymorpha HOM05D005787 ORTHO05D007011 7.2e-124 448.4 402 52.0
Mapoly0067s0098 Marchantia polymorpha HOM05D005787 ORTHO05D007011 3.9e-122 442.6 406 53.0
CSS0044707 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 1.1e-121 441.0 323 69.0
CANSAT64G1034 Cannabis sativa HOM05D005787 ORTHO05D007011 2.3e-114 416.8 257 77.4
SMO200G0270 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 9.7e-113 411.4 435 46.7
DCAR_029795 Daucus carota HOM05D005787 ORTHO05D007011 3.3e-100 369.8 299 64.9
SEGI_04414 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 4.9e-88 329.3 245 60.8
MSTRG.13153 Avicennia marina HOM05D005787 ORTHO05D007011 2.3e-77 293.9 163 81.0
CDE11G0446 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 6.4e-72 275.8 187 64.7
CDE11G0095 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 4.3e-68 263.1 193 67.4
AagrBONN_evm.TU.Sc2ySwM_228.3336 Anthoceros agrestis HOM05D005787 ORTHO05D007011 1.2e-67 261.5 233 56.7
RcHm_v2.0_Chr5g0003761 Rosa chinensis HOM05D005787 ORTHO05D007011 1.2e-65 255.0 235 59.6
SEGI_19902 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 1.3e-56 224.9 158 67.1
Hma1.2p1_3055F.1_g332150 Hydrangea macrophylla HOM05D005787 ORTHO05D007011 6.2e-51 206.1 130 69.2
DCAR_029794 Daucus carota HOM05D005787 ORTHO05D007011 1.2e-49 201.8 132 66.7
Cre11.g474850 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 1.6e-30 138.3 374 30.2
MCO11G946 Micromonas commoda HOM05D005787 ORTHO05D007011 6.7e-29 132.9 461 25.2
BcaC05g26802 Brassica carinata HOM05D005787 ORTHO05D007011 6.9e-26 122.9 86 68.6
PRCOL_00006623 Prasinoderma coloniale HOM05D005787 ORTHO05D007011 1.0e-21 109.0 366 29.5
MCO10G204 Micromonas commoda HOM05D005787 ORTHO05D007011 8.2e-19 99.4 279 30.1
A09p39340 Brassica napus HOM05D005787 ORTHO05D007011 7.4e-12 76.3 54 68.5
A01p18320 Brassica napus HOM05D005787 ORTHO05D007011 4.8e-11 73.6 80 53.8
Cre10.g462600 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 1.8e-10 71.6 98 39.8
Cre10.g462500 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 7.7e-09 66.2 223 28.7
C01p29500 Brassica napus HOM05D005787 ORTHO05D042539 1.3e-08 65.5 61 54.1
BolC1t02892H Brassica oleracea HOM05D005787 ORTHO05D042539 1.3e-08 65.5 61 54.1
QL05p074297 Quercus lobata HOM05D000001 ORTHO05D007011 6.5e-08 63.2 55 50.9
Os07g0660400 Oryza sativa ssp. japonica HOM05D005787 ORTHO05D007011 1.2e-06 58.9 95 36.8


User provided reference genes

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