Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H00778 Erythranthe guttata HOM05D005629 ORTHO05D008000 7.6e-144 513.8 265 100.0
Migut.F00066 Erythranthe guttata HOM05D005629 ORTHO05D008000 1.3e-138 496.5 262 97.3
SGA_v2.0_scaffold253G45198 Striga asiatica HOM05D005629 ORTHO05D008000 7.7e-128 460.7 262 88.9
SalBow4G2288 Salvia bowleyana HOM05D005629 ORTHO05D008000 1.3e-127 459.9 253 92.5
CiPaw.03G055300 Carya illinoinensis HOM05D005629 ORTHO05D008000 3.6e-125 451.8 262 88.2
CAN.G1751.5 Capsicum annuum HOM05D005629 ORTHO05D008000 7.9e-125 450.7 259 86.9
Nitab4.5_0000559g0400 Nicotiana tabacum HOM05D005629 ORTHO05D008000 1.0e-124 450.3 262 86.3
GSVIVG01033097001 Vitis vinifera HOM05D005629 ORTHO05D008000 1.4e-124 449.9 262 87.4
Migut.K01513 Erythranthe guttata HOM05D005629 ORTHO05D008000 6.7e-124 447.6 273 87.9
Nitab4.5_0005161g0130 Nicotiana tabacum HOM05D005629 ORTHO05D008000 6.7e-124 447.6 251 89.2
PGSC0003DMG400013378 Solanum tuberosum HOM05D005629 ORTHO05D008000 1.5e-123 446.4 262 85.5
Eucgr.I01649 Eucalyptus grandis HOM05D005629 ORTHO05D008000 2.0e-123 446.0 262 85.9
QL02p071469 Quercus lobata HOM05D005629 ORTHO05D008000 3.3e-123 445.3 261 85.4
Atru.chr6.2566 Acer truncatum HOM05D005629 ORTHO05D008000 4.4e-123 444.9 262 85.1
Actinidia36200 Actinidia chinensis HOM05D005629 ORTHO05D008000 1.3e-122 443.4 262 85.5
Cc07_g00800 Coffea canephora HOM05D005629 ORTHO05D008000 2.8e-122 442.2 261 84.7
arahy.Tifrunner.gnm1.ann1.26H0NE Arachis hypogaea HOM05D005629 ORTHO05D008000 4.8e-122 441.4 259 85.3
Cfa007230 Carpinus fangiana HOM05D005629 ORTHO05D008000 4.8e-122 441.4 262 85.9
CSS0048682 Camellia sinensis var. sinensis HOM05D005629 ORTHO05D004503 6.3e-122 441.0 257 87.5
unitig_52.g17654 Utricularia gibba HOM05D005629 ORTHO05D008000 6.3e-122 441.0 253 86.6
CANSAT64G1539 Cannabis sativa HOM05D005629 ORTHO05D008000 8.2e-122 440.7 251 88.0
Glyma.16G056900 Glycine max HOM05D005629 ORTHO05D008000 8.2e-122 440.7 251 86.9
Hma1.2p1_1278F.1_g272330 Hydrangea macrophylla HOM05D005629 ORTHO05D008000 8.2e-122 440.7 258 85.7
Ciclev10015840m.g Citrus clementina HOM05D005629 ORTHO05D008000 1.1e-121 440.3 258 84.9
Lj1g0025061 Lotus japonicus HOM05D005629 ORTHO05D008000 1.1e-121 440.3 262 85.1
Solyc03g005000.4 Solanum lycopersicum HOM05D005629 ORTHO05D008000 1.1e-121 440.3 262 84.4
Sopen03g001010 Solanum pennellii HOM05D005629 ORTHO05D008000 1.1e-121 440.3 262 84.4
COL.COLO4_17207 Corchorus olitorius HOM05D005629 ORTHO05D008000 1.4e-121 439.9 258 84.9
Phvul.001G094100 Phaseolus vulgaris HOM05D005629 ORTHO05D008000 1.4e-121 439.9 251 86.9
FAN09G2642 Fragaria x ananassa HOM05D005629 ORTHO05D008000 4.1e-121 438.3 251 86.9
Gohir.D07G235300 Gossypium hirsutum HOM05D005629 ORTHO05D008000 9.1e-121 437.2 262 83.2
Peaxi162Scf00700g00023 Petunia axillaris HOM05D005629 ORTHO05D008000 9.1e-121 437.2 292 77.7
VMungo1383G2395 Vigna mungo HOM05D005629 ORTHO05D008000 9.1e-121 437.2 251 86.1
Dinv33339 Davidia involucrata HOM05D005629 ORTHO05D008000 1.2e-120 436.8 262 84.4
FvH4_6g53470 Fragaria vesca HOM05D005629 ORTHO05D008000 1.5e-120 436.4 251 87.3
ECA246G2396 Erigeron canadensis HOM05D005629 ORTHO05D008000 2.0e-120 436.0 251 85.7
RcHm_v2.0_Chr2g0175511 Rosa chinensis HOM05D005629 ORTHO05D008000 2.0e-120 436.0 251 86.9
Thecc.04G035600 Theobroma cacao HOM05D005629 ORTHO05D008000 2.0e-120 436.0 263 83.7
Prupe.3G305800 Prunus persica HOM05D005629 ORTHO05D008000 2.6e-120 435.6 261 84.3
Sc03g0006560 Simmondsia chinensis HOM05D005629 ORTHO05D008000 2.6e-120 435.6 262 82.1
Haze_14872 Corylus avellana HOM05D005629 ORTHO05D008000 3.5e-120 435.3 251 87.3
Lalb_Chr14g0363391 Lupinus albus HOM05D005629 ORTHO05D008000 3.5e-120 435.3 250 86.8
Oeu058781.1 Olea europaea HOM05D005629 ORTHO05D008000 7.7e-120 434.1 261 84.7
Gorai.001G271100 Gossypium raimondii HOM05D005629 ORTHO05D008000 1.0e-119 433.7 263 83.3
Actinidia05920 Actinidia chinensis HOM05D005629 ORTHO05D008000 2.2e-119 432.6 262 84.4
Lju41A52T99 Lonicera japonica HOM05D005629 ORTHO05D008000 2.2e-119 432.6 276 80.8
Sed0004120 Sechium edule HOM05D005629 ORTHO05D008000 3.8e-119 431.8 262 80.9
ClCG05G013480 Citrullus lanatus HOM05D005629 ORTHO05D008000 6.5e-119 431.0 251 84.5
MD09G1011200 Malus domestica HOM05D005629 ORTHO05D008000 6.5e-119 431.0 251 86.1
DCAR_011309 Daucus carota HOM05D005629 ORTHO05D008000 8.5e-119 430.6 262 82.4
PSO017G3506 Papaver somniferum HOM05D005629 ORTHO05D008000 8.5e-119 430.6 262 81.7
Aqoxy3G01541 Aquilegia oxysepala HOM05D005629 ORTHO05D008000 1.4e-118 429.9 262 82.1
Gohir.A11G064500 Gossypium hirsutum HOM05D005629 ORTHO05D008000 1.4e-118 429.9 251 83.7
Gohir.A07G228100 Gossypium hirsutum HOM05D005629 ORTHO05D008000 2.5e-118 429.1 263 82.5
Gohir.D11G068800 Gossypium hirsutum HOM05D005629 ORTHO05D008000 3.2e-118 428.7 251 83.3
HanXRQChr17g0550111 Helianthus annuus HOM05D005629 ORTHO05D008000 3.2e-118 428.7 262 81.7
BcaC06g31019 Brassica carinata HOM05D005629 ORTHO05D008000 4.2e-118 428.3 262 80.5
BcaC06g33857 Brassica carinata HOM05D005629 ORTHO05D008000 4.2e-118 428.3 262 80.5
Medtr7g033405 Medicago truncatula HOM05D005629 ORTHO05D008000 5.5e-118 427.9 251 84.9
PGR142G0641 Punica granatum HOM05D005629 ORTHO05D008000 5.5e-118 427.9 262 81.7
Sp2g16240 Schrenkiella parvula HOM05D005629 ORTHO05D008000 9.4e-118 427.2 262 80.5
CsaV3_3G027030 Cucumis sativus L. HOM05D005629 ORTHO05D008000 1.2e-117 426.8 262 80.2
Psat3g164800 Pisum sativum HOM05D005629 ORTHO05D008000 1.2e-117 426.8 251 84.5
TWI56G1125 Tripterygium wilfordii HOM05D005629 ORTHO05D008000 1.6e-117 426.4 259 82.2
Ca_26782_v3 Cicer arietinum L. HOM05D005629 ORTHO05D008000 2.7e-117 425.6 251 84.1
AL5G16240 Arabidopsis lyrata HOM05D005629 ORTHO05D008000 3.6e-117 425.2 262 80.5
EL10Ac6g15359 Beta vulgaris HOM05D005629 ORTHO05D008000 4.7e-117 424.9 262 80.5
BcaC06g33860 Brassica carinata HOM05D005629 ORTHO05D008000 4.7e-117 424.9 262 79.4
A06p41480 Brassica napus HOM05D005629 ORTHO05D008000 6.1e-117 424.5 262 79.4
C07p36170 Brassica napus HOM05D005629 ORTHO05D008000 6.1e-117 424.5 262 79.4
BraA06t27073Z Brassica rapa HOM05D005629 ORTHO05D008000 6.1e-117 424.5 262 79.4
Carub.0005s0536 Capsella rubella HOM05D005629 ORTHO05D008000 8.0e-117 424.1 262 80.2
Gorai.007G073600 Gossypium raimondii HOM05D005629 ORTHO05D008000 8.0e-117 424.1 252 82.9
Potri.001G330800 Populus trichocarpa HOM05D005629 ORTHO05D008000 1.0e-116 423.7 262 82.4
THA.LOC104825621 Tarenaya hassleriana HOM05D005629 ORTHO05D008000 1.0e-116 423.7 262 80.2
BolC7t44133H Brassica oleracea HOM05D005629 ORTHO05D008000 1.4e-116 423.3 262 79.0
Cpa.g.sc171.18 Carica papaya HOM05D005629 ORTHO05D008000 3.0e-116 422.2 250 83.2
TPR.G38340 Trifolium pratense HOM05D005629 ORTHO05D008000 3.0e-116 422.2 251 84.9
Thhalv10004520m.g Eutrema salsugineum HOM05D005629 ORTHO05D008000 3.9e-116 421.8 262 79.8
AT3G27110 Arabidopsis thaliana HOM05D005629 ORTHO05D008000 6.7e-116 421.0 262 80.2
Ah.02g120470 Amaranthus hybridus HOM05D005629 ORTHO05D008000 1.5e-115 419.9 251 82.1
ATR0561G239 Amborella trichopoda HOM05D005629 ORTHO05D008000 7.4e-115 417.5 256 79.7
Aa31LG2G5490 Aethionema arabicum HOM05D005629 ORTHO05D008000 1.7e-114 416.4 251 81.3
Sabra16G0211800 Salix brachista HOM05D005629 ORTHO05D008000 3.5e-112 408.7 256 82.0
Zm00001eb127160 Zea mays HOM05D005629 ORTHO05D008000 3.8e-111 405.2 252 77.4
Os01g0970700 Oryza sativa ssp. japonica HOM05D005629 ORTHO05D008000 8.5e-111 404.1 252 77.8
vmacro05954 Vaccinium macrocarpon HOM05D005629 ORTHO05D008000 5.5e-110 401.4 251 80.5
Rhsim10G0006600 Rhododendron simsii HOM05D005629 ORTHO05D008000 1.2e-109 400.2 251 81.7
SEGI_10761 Sequoiadendron giganteum HOM05D005629 ORTHO05D008000 1.0e-108 397.1 251 77.3
HPP92_024304 Vanilla planifolia HOM05D005629 ORTHO05D008000 2.0e-107 392.9 251 76.9
Mapoly0033s0112 Marchantia polymorpha HOM05D005629 ORTHO05D008000 5.7e-107 391.3 251 75.7
HPP92_024293 Vanilla planifolia HOM05D005629 ORTHO05D008000 2.8e-106 389.0 251 76.1
Migut.G01029 Erythranthe guttata HOM05D005629 ORTHO05D008000 6.3e-106 387.9 244 86.9
Dinv25662 Davidia involucrata HOM05D005629 ORTHO05D000552 2.7e-104 382.5 211 90.5
Duzib264G0865 Durio zibethinus HOM05D005629 ORTHO05D008000 3.5e-104 382.1 263 74.9
Hund04337 Selenicereus undatus HOM05D005629 ORTHO05D008000 2.9e-103 379.0 298 67.1
AUR62003511 Chenopodium quinoa HOM05D005629 ORTHO05D008000 1.5e-102 376.7 250 74.8
Gorai.004G126700 Gossypium raimondii HOM05D005629 ORTHO05D008000 4.0e-100 368.6 237 77.6
AUR62017822 Chenopodium quinoa HOM05D005629 ORTHO05D008000 9.8e-99 364.0 235 77.0
Gohir.D08G117950 Gossypium hirsutum HOM05D005629 ORTHO05D008000 2.8e-98 362.5 235 77.0
Nn4g22342 Nelumbo nucifera HOM05D005629 ORTHO05D008000 9.8e-91 337.4 262 69.5
AagrBONN_evm.TU.Sc2ySwM_117.2248 Anthoceros agrestis HOM05D005629 ORTHO05D008000 2.7e-88 329.3 201 76.6
MCO03G471 Micromonas commoda HOM05D005629 ORTHO05D008000 6.6e-87 324.7 248 63.3
Cre14.g620150 Chlamydomonas reinhardtii HOM05D005629 ORTHO05D008000 1.5e-86 323.6 252 63.5
FAN05G5024 Fragaria x ananassa HOM05D005629 ORTHO05D008000 5.0e-79 298.5 173 86.1
FAN02G3075 Fragaria x ananassa HOM05D005629 ORTHO05D008000 1.4e-76 290.4 181 82.3
Manes.15G160600 Manihot esculenta HOM05D005629 ORTHO05D008000 1.8e-76 290.0 172 83.7
MELO3C014882.2 Cucumis melo HOM05D005629 ORTHO05D008000 7.5e-75 284.6 173 79.8
CARHR148330 Cardamine hirsuta HOM05D005629 ORTHO05D008000 4.1e-73 278.9 172 79.1
Lsat_1_v5_gn_9_1240 Lactuca sativa HOM05D005629 ORTHO05D008000 1.3e-71 273.9 159 83.0
PRCOL_00001739 Prasinoderma coloniale HOM05D005629 ORTHO05D008000 1.3e-71 273.9 255 52.5
FAN14G4117 Fragaria x ananassa HOM05D005629 ORTHO05D008000 1.8e-68 263.5 237 62.9
Migut.K01251 Erythranthe guttata HOM05D005629 ORTHO05D008000 1.6e-64 250.4 162 84.6
Zm00001eb202540 Zea mays HOM05D002249 ORTHO05D002443 6.4e-58 228.4 209 56.9
CDE05G1086 Ceratophyllum demersum HOM05D001132 ORTHO05D002510 8.4e-58 228.0 136 80.9
Zm00001eb427710 Zea mays HOM05D005629 ORTHO05D003422 3.0e-47 193.0 116 77.6
TAR622G1261 Trochodendron aralioides HOM05D005629 ORTHO05D008000 5.1e-47 192.2 119 80.7
Zm00001eb174780 Zea mays HOM05D005629 ORTHO05D008000 5.1e-47 192.2 130 72.3
Zm00001eb146790 Zea mays HOM05D005629 ORTHO05D003607 1.1e-44 184.5 116 75.9
Zm00001eb332250 Zea mays HOM05D002343 ORTHO05D002443 5.8e-43 178.7 127 68.5
FvH4_6g53390 Fragaria vesca HOM05D005629 ORTHO05D022663 4.2e-41 172.6 221 46.2
FvH4_6g53420 Fragaria vesca HOM05D005629 ORTHO05D022663 7.1e-41 171.8 220 45.9
FvH4_6g53350 Fragaria vesca HOM05D005629 ORTHO05D022663 3.5e-40 169.5 220 45.0
FAN02G3684 Fragaria x ananassa HOM05D005629 ORTHO05D008000 1.5e-30 137.5 73 90.4
CDE02G4678 Ceratophyllum demersum HOM05D000139 ORTHO05D000103 1.9e-30 137.1 79 83.5
arahy.Tifrunner.gnm1.ann1.0H9GWB Arachis hypogaea HOM05D005629 ORTHO05D008000 1.2e-27 127.9 76 82.9
MELO3C032122.2 Cucumis melo HOM05D005629 ORTHO05D008000 1.3e-26 124.4 63 92.1
FAN14G1519 Fragaria x ananassa HOM05D005629 ORTHO05D022663 1.2e-24 117.9 221 36.7
Zm00001eb048250 Zea mays HOM05D005629 ORTHO05D008000 1.0e-23 114.8 74 71.6
PRCOL_00005410 Prasinoderma coloniale HOM05D005629 ORTHO05D333266 1.3e-23 114.4 227 32.6
AagrBONN_evm.TU.Sc2ySwM_228.873 Anthoceros agrestis HOM05D005629 ORTHO05D008000 3.4e-19 99.8 296 26.0
A02p35090 Brassica napus HOM05D005629 ORTHO05D008000 6.5e-18 95.5 81 63.0
FAN02G2357 Fragaria x ananassa HOM05D005629 ORTHO05D008000 6.5e-18 95.5 102 49.0
BraA02t08515Z Brassica rapa HOM05D005629 ORTHO05D008000 4.6e-16 89.4 77 61.0
Lsat_1_v5_gn_0_46360 Lactuca sativa HOM05D005629 ORTHO05D008000 7.7e-11 72.0 44 84.1
CAN.G792.7 Capsicum annuum HOM05D002518 ORTHO05D002630 6.1e-08 62.4 39 76.9
Zm00001eb059400 Zea mays HOM05D003056 ORTHO05D003422 6.1e-08 62.4 59 59.3
BolC2t11443H Brassica oleracea HOM05D005629 ORTHO05D008000 3.0e-07 60.1 49 65.3


User provided reference genes

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