Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H00677 Erythranthe guttata HOM05D004214 ORTHO05D004963 1.5e-144 516.2 255 100.0
MSTRG.23916 Avicennia marina HOM05D004214 ORTHO05D004963 2.4e-110 402.5 250 79.6
Oeu010226.1 Olea europaea HOM05D004214 ORTHO05D004963 4.8e-103 378.3 250 77.2
Oeu010227.1 Olea europaea HOM05D004214 ORTHO05D004963 4.8e-103 378.3 250 77.2
SalBow1G5883 Salvia bowleyana HOM05D004214 ORTHO05D004963 1.4e-97 360.1 250 73.6
Dinv11505 Davidia involucrata HOM05D004214 ORTHO05D004963 2.0e-96 356.3 254 71.3
Cc07_g03630 Coffea canephora HOM05D004214 ORTHO05D004963 4.4e-88 328.6 243 63.8
CSS0015906 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 7.5e-88 327.8 233 69.1
CSS0019671 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 7.5e-88 327.8 233 69.1
TWI60G1366 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 1.4e-86 323.6 204 76.0
PGSC0003DMG400025136 Solanum tuberosum HOM05D004214 ORTHO05D004963 1.3e-84 317.0 224 69.6
Nitab4.5_0010283g0010 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.5e-83 313.5 204 75.0
Eucgr.I02016 Eucalyptus grandis HOM05D004214 ORTHO05D004963 1.9e-83 313.2 243 64.6
Actinidia06102 Actinidia chinensis HOM05D004214 ORTHO05D004963 2.5e-83 312.8 206 70.9
GSVIVG01011460001 Vitis vinifera HOM05D004214 ORTHO05D004963 3.2e-83 312.4 224 68.3
Lsat_1_v5_gn_4_169740 Lactuca sativa HOM05D004214 ORTHO05D004963 4.2e-83 312.0 222 66.7
Cpa.g.sc14.113 Carica papaya HOM05D004214 ORTHO05D004963 7.2e-83 311.2 223 66.4
HanXRQChr15g0487741 Helianthus annuus HOM05D004214 ORTHO05D004963 1.2e-82 310.5 202 71.8
Sopen02g016310 Solanum pennellii HOM05D004214 ORTHO05D004963 1.2e-82 310.5 199 74.4
Solyc02g067120.4 Solanum lycopersicum HOM05D004214 ORTHO05D004963 1.6e-82 310.1 199 74.4
Potri.017G087500 Populus trichocarpa HOM05D004214 ORTHO05D004963 3.6e-82 308.9 260 60.4
Hma1.2p1_0409F.1_g146710 Hydrangea macrophylla HOM05D004214 ORTHO05D004963 3.0e-81 305.8 223 67.3
Sc10g0003430 Simmondsia chinensis HOM05D004214 ORTHO05D004963 3.0e-81 305.8 212 69.3
Ciclev10012515m.g Citrus clementina HOM05D004214 ORTHO05D004963 4.0e-81 305.4 223 67.7
Atru.chr8.322 Acer truncatum HOM05D004214 ORTHO05D004963 5.2e-81 305.1 219 68.5
EL10Ac2g03019 Beta vulgaris HOM05D004214 ORTHO05D004963 2.0e-80 303.1 208 69.2
ECA232G2753 Erigeron canadensis HOM05D004214 ORTHO05D005214 3.4e-80 302.4 197 73.1
Manes.02G048700 Manihot esculenta HOM05D004214 ORTHO05D004963 3.4e-80 302.4 223 67.7
TAR629G3302 Trochodendron aralioides HOM05D004214 ORTHO05D004963 9.8e-80 300.8 250 62.4
unitig_62.g23442 Utricularia gibba HOM05D004214 ORTHO05D004963 6.3e-79 298.1 240 61.7
CSS0036969 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 4.1e-78 295.4 211 67.8
TWI34G0797 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 1.2e-77 293.9 204 70.6
TWI34G1333 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 1.2e-77 293.9 204 70.6
CAN.G979.5 Capsicum annuum HOM05D004214 ORTHO05D004963 7.7e-77 291.2 194 71.6
Thhalv10027904m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 1.3e-76 290.4 200 68.5
SGA_v2.0_scaffold413G51175 Striga asiatica HOM05D004214 ORTHO05D004963 1.3e-76 290.4 231 67.5
Sp7g02430 Schrenkiella parvula HOM05D004214 ORTHO05D004963 1.1e-75 287.3 200 67.5
CARHR262760 Cardamine hirsuta HOM05D004214 ORTHO05D004963 1.9e-75 286.6 249 58.2
AL7G50770 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 1.2e-74 283.9 200 66.5
Hund15587 Selenicereus undatus HOM05D004214 ORTHO05D004963 3.6e-74 282.3 202 68.3
Carub.0007s3642 Capsella rubella HOM05D004214 ORTHO05D004963 6.1e-74 281.6 200 66.0
BraA04t16893Z Brassica rapa HOM05D004214 ORTHO05D004963 1.8e-73 280.0 200 65.5
A04p12290 Brassica napus HOM05D004214 ORTHO05D004963 3.0e-73 279.3 200 65.5
AUR62018111 Chenopodium quinoa HOM05D004214 ORTHO05D004963 5.2e-73 278.5 212 62.3
DCAR_011079 Daucus carota HOM05D004214 ORTHO05D004963 5.2e-73 278.5 206 65.5
Lj3A346G23 Lonicera japonica HOM05D004214 ORTHO05D004963 5.2e-73 278.5 194 67.5
THA.LOC104805483 Tarenaya hassleriana HOM05D004214 ORTHO05D004963 5.2e-73 278.5 219 62.1
C04p45970 Brassica napus HOM05D004214 ORTHO05D004963 8.9e-73 277.7 200 65.0
BolC4t26180H Brassica oleracea HOM05D004214 ORTHO05D004963 8.9e-73 277.7 200 65.0
Rhsim10G0035900 Rhododendron simsii HOM05D004214 ORTHO05D004963 1.2e-72 277.3 233 59.2
BcaB06g27341 Brassica carinata HOM05D004214 ORTHO05D004963 2.0e-72 276.6 200 65.0
Thecc.04G087300 Theobroma cacao HOM05D004214 ORTHO05D004963 7.5e-72 274.6 218 60.1
Duzib147G0992 Durio zibethinus HOM05D004214 ORTHO05D004963 2.8e-71 272.7 222 59.0
Gorai.001G240700 Gossypium raimondii HOM05D004214 ORTHO05D004963 2.8e-71 272.7 218 59.6
Sp7g02440 Schrenkiella parvula HOM05D004214 ORTHO05D004963 2.8e-71 272.7 220 60.9
Thhalv10028063m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 4.9e-71 271.9 231 57.6
Rhsim10G0035800 Rhododendron simsii HOM05D004214 ORTHO05D004963 1.1e-70 270.8 198 65.7
BraA04t16892Z Brassica rapa HOM05D004214 ORTHO05D004963 5.4e-70 268.5 200 63.0
C04p45960 Brassica napus HOM05D004214 ORTHO05D004963 9.2e-70 267.7 200 63.0
BolC4t26179H Brassica oleracea HOM05D004214 ORTHO05D004963 9.2e-70 267.7 200 63.0
BcaB06g27320 Brassica carinata HOM05D004214 ORTHO05D004963 2.0e-69 266.5 200 62.5
BcaB06g27340 Brassica carinata HOM05D004214 ORTHO05D004963 7.8e-69 264.6 196 62.8
A04p12270 Brassica napus HOM05D004214 ORTHO05D004963 1.0e-68 264.2 204 59.3
A04p12280 Brassica napus HOM05D004214 ORTHO05D004963 1.0e-68 264.2 200 62.5
BraA04t16891Z Brassica rapa HOM05D004214 ORTHO05D004963 1.0e-68 264.2 204 59.3
AL7G50790 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 2.5e-67 259.6 218 56.0
COL.COLO4_12225 Corchorus olitorius HOM05D004214 ORTHO05D004963 1.6e-66 256.9 178 68.5
Peaxi162Scf00629g00121 Petunia axillaris HOM05D004214 ORTHO05D004963 3.6e-66 255.8 205 62.9
Carub.0007s3643 Capsella rubella HOM05D004214 ORTHO05D004963 4.7e-66 255.4 207 58.0
CARHR262800 Cardamine hirsuta HOM05D004214 ORTHO05D004963 8.0e-66 254.6 175 68.0
AT5G39520 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 1.4e-65 253.8 216 55.6
AT5G39530 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 5.2e-65 251.9 175 67.4
CARHR262810 Cardamine hirsuta HOM05D004214 ORTHO05D004963 5.2e-65 251.9 207 57.5
CDE02G0918 Ceratophyllum demersum HOM05D004214 ORTHO05D004963 6.8e-65 251.5 195 61.0
PSO478G0939 Papaver somniferum HOM05D004214 ORTHO05D004963 4.4e-64 248.8 217 53.9
AUR62034445 Chenopodium quinoa HOM05D004214 ORTHO05D004963 7.5e-64 248.1 175 65.7
Nitab4.5_0000212g0090 Nicotiana tabacum HOM05D004214 ORTHO05D004963 7.5e-64 248.1 204 62.7
PSO017G4463 Papaver somniferum HOM05D004214 ORTHO05D004963 9.8e-64 247.7 217 53.9
ATR0564G445 Amborella trichopoda HOM05D004214 ORTHO05D004963 1.3e-63 247.3 211 54.0
QL02p084825 Quercus lobata HOM05D004214 ORTHO05D004963 2.3e-60 236.5 196 57.1
SEGI_32476 Sequoiadendron giganteum HOM05D004214 ORTHO05D004963 3.0e-60 236.1 202 55.0
Nn4g23269 Nelumbo nucifera HOM05D004214 ORTHO05D004963 1.1e-59 234.2 188 59.6
Nitab4.5_0000568g0170 Nicotiana tabacum HOM05D004214 ORTHO05D004963 4.7e-58 228.8 217 51.6
PGSC0003DMG401001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 2.3e-57 226.5 212 52.8
PGSC0003DMG402001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 5.2e-57 225.3 212 52.4
PGR004G0346 Punica granatum HOM05D004214 ORTHO05D004963 1.2e-56 224.2 173 63.6
CAN.G206.176 Capsicum annuum HOM05D004214 ORTHO05D004963 4.4e-56 222.2 216 51.4
Lj3A369T15 Lonicera japonica HOM05D004214 ORTHO05D004963 1.7e-55 220.3 147 69.4
Lj3A367T10 Lonicera japonica HOM05D004214 ORTHO05D004963 6.4e-55 218.4 201 56.7
Lj8A428G27 Lonicera japonica HOM05D004214 ORTHO05D004963 1.1e-54 217.6 198 58.1
Solyc02g088270.3 Solanum lycopersicum HOM05D004214 ORTHO05D004963 1.1e-54 217.6 208 51.0
Sopen02g032950 Solanum pennellii HOM05D004214 ORTHO05D004963 1.4e-54 217.2 195 53.3
Lj8A426T27 Lonicera japonica HOM05D004214 ORTHO05D004963 5.4e-54 215.3 147 68.7
QL02p084872 Quercus lobata HOM05D004214 ORTHO05D004963 1.6e-53 213.8 218 48.2
Gohir.D07G212700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 6.0e-53 211.8 157 61.1
Lj4P113T24 Lonicera japonica HOM05D004214 ORTHO05D004963 5.1e-52 208.8 140 70.7
Lj2g0016815 Lotus japonicus HOM05D004214 ORTHO05D004963 1.9e-51 206.8 194 48.5
BcaB06g27319 Brassica carinata HOM05D004214 ORTHO05D004963 2.5e-51 206.5 204 50.0
Lj3A352G14 Lonicera japonica HOM05D004214 ORTHO05D004963 4.7e-50 202.2 140 67.9
Ca_04853_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 1.8e-49 200.3 190 47.4
TPR.G14395 Trifolium pratense HOM05D004214 ORTHO05D004963 6.8e-49 198.4 192 46.9
Medtr6g012830 Medicago truncatula HOM05D004214 ORTHO05D004963 1.7e-47 193.7 194 46.9
TPR.G26214 Trifolium pratense HOM05D004214 ORTHO05D004963 2.2e-47 193.4 196 45.9
Lj2g0002943 Lotus japonicus HOM05D004214 ORTHO05D004963 2.9e-47 193.0 193 45.1
Glyma.13G060852 Glycine max HOM05D004214 ORTHO05D004963 6.4e-47 191.8 195 45.1
Peaxi162Scf00166g01050 Petunia axillaris HOM05D004214 ORTHO05D004963 1.9e-46 190.3 194 47.9
Os03g0168300 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 4.1e-46 189.1 208 44.7
PGR083G1063 Punica granatum HOM05D004214 ORTHO05D004963 5.4e-46 188.7 193 48.7
MD09G1055000 Malus domestica HOM05D004214 ORTHO05D004963 3.5e-45 186.0 258 39.9
Zm00001eb402430 Zea mays HOM05D004214 ORTHO05D004963 4.6e-45 185.7 198 44.9
arahy.Tifrunner.gnm1.ann1.7SZ544 Arachis hypogaea HOM05D004214 ORTHO05D004963 1.3e-44 184.1 192 41.7
arahy.Tifrunner.gnm1.ann1.55PBKN Arachis hypogaea HOM05D004214 ORTHO05D004963 1.7e-44 183.7 192 41.1
Phvul.004G031400 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 1.7e-44 183.7 198 41.9
Prupe.3G263500 Prunus persica HOM05D004214 ORTHO05D004963 5.1e-44 182.2 220 44.1
Lalb_Chr06g0175181 Lupinus albus HOM05D004214 ORTHO05D004963 6.6e-44 181.8 190 43.7
Psat1g070480 Pisum sativum HOM05D004214 ORTHO05D004963 6.6e-44 181.8 165 49.7
VMungo0464G0566 Vigna mungo HOM05D004214 ORTHO05D004963 1.5e-43 180.6 198 42.4
Glyma.19G025600 Glycine max HOM05D004214 ORTHO05D004963 3.3e-43 179.5 223 39.9
FAN05G5298 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.4e-41 174.1 190 45.3
QL02p084854 Quercus lobata HOM05D004214 ORTHO05D004963 1.4e-41 174.1 218 42.2
FvH4_6g48001 Fragaria vesca HOM05D004214 ORTHO05D004963 1.8e-41 173.7 248 37.1
Mapoly0033s0115 Marchantia polymorpha HOM05D004214 ORTHO05D004963 1.2e-40 171.0 232 35.3
FAN14G3700 Fragaria x ananassa HOM05D004214 ORTHO05D004963 2.6e-40 169.9 248 36.7
Zm00001eb328430 Zea mays HOM05D004214 ORTHO05D004963 3.4e-40 169.5 164 51.8
ClCG09G017980 Citrullus lanatus HOM05D004214 ORTHO05D004963 1.3e-39 167.5 186 43.0
RcHm_v2.0_Chr2g0167291 Rosa chinensis HOM05D004214 ORTHO05D004963 2.9e-39 166.4 200 41.5
C04p45950 Brassica napus HOM05D004214 ORTHO05D004963 3.2e-38 162.9 204 42.6
Lj2g0019349 Lotus japonicus HOM05D004214 ORTHO05D004963 4.2e-38 162.5 192 40.6
CsaV3_5G038250 Cucumis sativus L. HOM05D004214 ORTHO05D004963 5.4e-38 162.2 187 42.8
FAN14G4990 Fragaria x ananassa HOM05D004214 ORTHO05D004963 7.1e-38 161.8 207 41.1
FvH4_6g48000 Fragaria vesca HOM05D004214 ORTHO05D004963 9.3e-38 161.4 190 43.2
Os07g0633000 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 1.2e-37 161.0 164 52.4
RcHm_v2.0_Chr2g0167251 Rosa chinensis HOM05D004214 ORTHO05D004963 4.6e-37 159.1 213 39.4
Gohir.A07G206700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 6.0e-37 158.7 125 60.0
Lj2g0001860 Lotus japonicus HOM05D004214 ORTHO05D004963 3.0e-36 156.4 138 48.6
Phvul.004G029700 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 1.5e-35 154.1 197 38.6
Psat1g071840 Pisum sativum HOM05D004214 ORTHO05D004963 2.5e-35 153.3 192 38.0
RcHm_v2.0_Chr2g0167241 Rosa chinensis HOM05D004214 ORTHO05D004963 2.5e-35 153.3 238 39.1
TPR.G8805 Trifolium pratense HOM05D004214 ORTHO05D004963 3.3e-35 152.9 206 38.8
MELO3C033594.2 Cucumis melo HOM05D004214 ORTHO05D004963 1.3e-34 151.0 221 37.1
Ca_04848_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 4.8e-34 149.1 198 38.9
FAN09G1794 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.8e-33 147.1 190 41.1
Nitab4.5_0001591g0160 Nicotiana tabacum HOM05D004214 ORTHO05D004963 9.9e-32 141.4 254 35.8
arahy.Tifrunner.gnm1.ann1.SU00NT Arachis hypogaea HOM05D004214 ORTHO05D004963 2.1e-29 133.7 212 35.4
CBR_g51334 Chara braunii HOM05D004214 ORTHO05D004963 7.9e-29 131.7 187 38.0
FAN02G2928 Fragaria x ananassa HOM05D004214 ORTHO05D004963 3.9e-28 129.4 205 37.1
ClCG10G015310 Citrullus lanatus HOM05D004214 ORTHO05D004963 1.9e-27 127.1 196 36.2
BolC4t26178H Brassica oleracea HOM05D004214 ORTHO05D004963 1.3e-26 124.4 93 59.1
Gohir.D11G074550 Gossypium hirsutum HOM05D004214 ORTHO05D004963 3.1e-25 119.8 134 44.8
Gorai.007G080000 Gossypium raimondii HOM05D004214 ORTHO05D004963 4.0e-25 119.4 134 44.8
MD09G1055400 Malus domestica HOM05D004214 ORTHO05D004963 1.9e-22 110.5 114 41.2
Glyma.13G061800 Glycine max HOM05D004214 ORTHO05D004963 1.0e-20 104.8 98 46.9
PRCOL_00004285 Prasinoderma coloniale HOM05D004214 ORTHO05D004963 1.0e-20 104.8 182 30.8
Lj3A364T22 Lonicera japonica HOM05D004214 ORTHO05D004963 4.0e-17 92.8 67 67.2
Lj3A350G16 Lonicera japonica HOM05D004214 ORTHO05D004963 2.0e-16 90.5 201 33.8
CsaV3_3G041190 Cucumis sativus L. HOM05D004214 ORTHO05D004963 2.6e-16 90.1 196 28.6
C06p18570 Brassica napus HOM05D004214 ORTHO05D004963 4.5e-16 89.4 83 56.6
Sabra17G0077200 Salix brachista HOM05D004214 ORTHO05D004963 6.5e-15 85.5 81 56.8
MELO3C009848.2 Cucumis melo HOM05D004214 ORTHO05D004963 5.5e-14 82.4 168 31.0
BraA07t29702Z Brassica rapa HOM05D004214 ORTHO05D004963 1.2e-13 81.3 74 59.5
BolC9t55376H Brassica oleracea HOM05D004214 ORTHO05D004963 7.9e-13 78.6 78 50.0
Aa31LG9G16510 Aethionema arabicum HOM05D004214 ORTHO05D004963 1.8e-12 77.4 59 62.7
AagrBONN_evm.TU.Sc2ySwM_362.234 Anthoceros agrestis HOM05D019249 ORTHO05D019657 3.7e-10 69.7 239 25.1
BolC6t37070H Brassica oleracea HOM05D004214 ORTHO05D004963 4.8e-10 69.3 65 56.9
CBR_g46605 Chara braunii HOM05D004214 ORTHO05D004963 6.3e-10 68.9 112 35.7


User provided reference genes

Program Settings