Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H00560 Erythranthe guttata HOM05D007347 ORTHO05D009296 1.1e-174 617.5 587 100.0
SGA_v2.0_scaffold204G41666 Striga asiatica HOM05D007347 ORTHO05D009296 1.1e-105 388.3 586 78.2
MSTRG.24902 Avicennia marina HOM05D007347 ORTHO05D009296 1.5e-86 324.7 585 74.0
Peaxi162Scf00004g02628 Petunia axillaris HOM05D007347 ORTHO05D009296 1.2e-85 321.6 569 73.1
CAN.G71.18 Capsicum annuum HOM05D007347 ORTHO05D009296 1.4e-84 318.2 589 72.7
Sopen04g021380 Solanum pennellii HOM05D007347 ORTHO05D009296 3.0e-84 317.0 588 72.4
Solyc04g050550.3 Solanum lycopersicum HOM05D007347 ORTHO05D009296 2.8e-82 310.5 588 71.9
Prupe.6G186200 Prunus persica HOM05D007347 ORTHO05D009296 1.7e-74 284.6 589 72.0
MD15G1324700 Malus domestica HOM05D007347 ORTHO05D009296 2.8e-74 283.9 589 72.2
Cc07_g04830 Coffea canephora HOM05D007347 ORTHO05D009296 5.9e-72 276.2 186 68.8
Sed0006376 Sechium edule HOM05D007347 ORTHO05D009296 1.0e-71 275.4 592 68.4
SalBow1G8225 Salvia bowleyana HOM05D007347 ORTHO05D009296 2.3e-71 274.2 186 72.0
MELO3C026797.2 Cucumis melo HOM05D007347 ORTHO05D009296 8.0e-69 265.8 576 68.2
CsaV3_5G013240 Cucumis sativus L. HOM05D007347 ORTHO05D009296 8.0e-69 265.8 576 68.2
Dinv34879 Davidia involucrata HOM05D007347 ORTHO05D009296 7.5e-67 259.2 186 68.3
CSS0000287 Camellia sinensis var. sinensis HOM05D007347 ORTHO05D009296 6.4e-66 256.1 589 70.5
CSS0049471 Camellia sinensis var. sinensis HOM05D007347 ORTHO05D009296 6.4e-66 256.1 589 70.5
Eucgr.I02100 Eucalyptus grandis HOM05D007347 ORTHO05D009296 1.4e-65 255.0 588 70.1
Nitab4.5_0007154g0010 Nicotiana tabacum HOM05D007347 ORTHO05D009296 3.2e-65 253.8 186 65.6
Actinidia18106 Actinidia chinensis HOM05D007347 ORTHO05D009296 5.9e-64 249.6 186 65.6
Lj4P128T51 Lonicera japonica HOM05D007347 ORTHO05D009296 6.6e-63 246.1 183 68.9
Hma1.2p1_1364F.1_g278380 Hydrangea macrophylla HOM05D007347 ORTHO05D009296 3.3e-62 243.8 177 65.5
HanXRQChr14g0448021 Helianthus annuus HOM05D007347 ORTHO05D009296 4.3e-62 243.4 189 67.7
QL06p007153 Quercus lobata HOM05D007347 ORTHO05D009296 5.6e-62 243.0 190 61.1
RcHm_v2.0_Chr2g0114451 Rosa chinensis HOM05D007347 ORTHO05D009296 5.6e-62 243.0 187 64.7
Lsat_1_v5_gn_2_86161 Lactuca sativa HOM05D007347 ORTHO05D009296 1.6e-61 241.5 189 66.7
RcHm_v2.0_Chr6g0269561 Rosa chinensis HOM05D007347 ORTHO05D009296 2.1e-61 241.1 188 63.8
Psat4g145840 Pisum sativum HOM05D007347 ORTHO05D009296 8.9e-60 235.7 577 68.1
FAN23G0923 Fragaria x ananassa HOM05D007347 ORTHO05D009296 2.0e-59 234.6 179 64.8
FAN23G0930 Fragaria x ananassa HOM05D007347 ORTHO05D009296 2.0e-59 234.6 179 64.8
FAN26G2104 Fragaria x ananassa HOM05D007347 ORTHO05D009296 2.0e-59 234.6 179 64.8
CiPaw.03G007800 Carya illinoinensis HOM05D007347 ORTHO05D009296 3.4e-59 233.8 186 60.2
FvH4_1g20970 Fragaria vesca HOM05D007347 ORTHO05D009296 4.4e-59 233.4 179 64.2
ClCG11G001180 Citrullus lanatus HOM05D007347 ORTHO05D009296 5.8e-59 233.0 189 59.8
TWI15G0869 Tripterygium wilfordii HOM05D007347 ORTHO05D009296 9.8e-59 232.3 186 61.8
FAN19G1358 Fragaria x ananassa HOM05D007347 ORTHO05D009296 1.7e-58 231.5 179 64.2
Sc10g0001490 Simmondsia chinensis HOM05D007347 ORTHO05D009296 1.2e-56 225.3 186 59.1
CANSAT64G0714 Cannabis sativa HOM05D007347 ORTHO05D009296 3.5e-56 223.8 191 60.2
GSVIVG01036486001 Vitis vinifera HOM05D007347 ORTHO05D009296 1.5e-54 218.4 174 60.3
Glyma.15G236300 Glycine max HOM05D007347 ORTHO05D009296 1.9e-54 218.0 585 66.0
Haze_14081 Corylus avellana HOM05D007347 ORTHO05D009296 4.3e-54 216.9 179 60.3
Cfa007995 Carpinus fangiana HOM05D007347 ORTHO05D009296 1.2e-53 215.3 180 59.4
Cpa.g.sc16.131 Carica papaya HOM05D007347 ORTHO05D009296 3.6e-53 213.8 171 59.6
COL.COLO4_23655 Corchorus olitorius HOM05D007347 ORTHO05D009296 1.4e-52 211.8 506 76.1
Ciclev10011342m.g Citrus clementina HOM05D007347 ORTHO05D009296 1.8e-52 211.5 182 58.8
TAR371G0226 Trochodendron aralioides HOM05D007347 ORTHO05D009296 2.3e-52 211.1 186 55.4
TAR629G3514 Trochodendron aralioides HOM05D007347 ORTHO05D009296 2.3e-52 211.1 186 55.4
PSO782G5207 Papaver somniferum HOM05D007347 ORTHO05D009296 2.6e-51 207.6 178 57.3
Potri.017G108600 Populus trichocarpa HOM05D007347 ORTHO05D009296 2.6e-51 207.6 178 58.4
Atru.chr10.1870 Acer truncatum HOM05D007347 ORTHO05D009296 4.4e-51 206.8 588 67.3
BcaB06g27240 Brassica carinata HOM05D007347 ORTHO05D009296 5.8e-51 206.5 590 65.6
Ah.16g102100 Amaranthus hybridus HOM05D007347 ORTHO05D009296 1.3e-50 205.3 188 55.9
Glyma.13G197700 Glycine max HOM05D007347 ORTHO05D009296 1.3e-50 205.3 185 55.7
Gohir.D02G204900 Gossypium hirsutum HOM05D007347 ORTHO05D009296 1.3e-50 205.3 178 56.7
Duzib138G0808 Durio zibethinus HOM05D007347 ORTHO05D009296 8.3e-50 202.6 175 58.9
Medtr8g039270 Medicago truncatula HOM05D007347 ORTHO05D009296 1.4e-49 201.8 183 53.0
Thecc.04G145700 Theobroma cacao HOM05D007347 ORTHO05D009296 1.9e-49 201.4 185 55.1
Gorai.005G232200 Gossypium raimondii HOM05D007347 ORTHO05D009296 2.4e-49 201.1 175 57.1
Thhalv10028323m.g Eutrema salsugineum HOM05D007347 ORTHO05D009296 3.2e-49 200.7 192 53.1
AL7G51690 Arabidopsis lyrata HOM05D007347 ORTHO05D009296 9.2e-49 199.1 190 54.2
Gohir.A03G183300 Gossypium hirsutum HOM05D007347 ORTHO05D009296 2.1e-48 198.0 175 57.7
Lj3g0007423 Lotus japonicus HOM05D007347 ORTHO05D009296 2.1e-48 198.0 185 53.0
Sabra17G0091200 Salix brachista HOM05D007347 ORTHO05D009296 2.7e-48 197.6 175 56.6
AT5G38730 Arabidopsis thaliana HOM05D007347 ORTHO05D009296 4.6e-48 196.8 192 52.1
THA.LOC104805542 Tarenaya hassleriana HOM05D007347 ORTHO05D009296 4.6e-48 196.8 190 52.6
AUR62019500 Chenopodium quinoa HOM05D007347 ORTHO05D009296 7.8e-48 196.1 180 53.9
MBI03_g44527_MAGBIO Magnolia biondii HOM05D007347 ORTHO05D009296 7.8e-48 196.1 180 55.0
ATR0124G035 Amborella trichopoda HOM05D007347 ORTHO05D009296 1.7e-47 194.9 186 50.0
Carub.0007s3713 Capsella rubella HOM05D007347 ORTHO05D009296 3.0e-47 194.1 190 52.6
SpUn0124_0020 Schrenkiella parvula HOM05D007347 ORTHO05D009296 3.9e-47 193.7 190 52.1
SpUn0185_0030 Schrenkiella parvula HOM05D007347 ORTHO05D009296 3.9e-47 193.7 190 52.1
BraA04t16830Z Brassica rapa HOM05D007347 ORTHO05D009296 5.1e-47 193.4 187 52.9
Phvul.011G207300 Phaseolus vulgaris HOM05D007347 ORTHO05D009296 8.6e-47 192.6 174 57.5
TPR.G30433 Trifolium pratense HOM05D007347 ORTHO05D009296 8.6e-47 192.6 171 54.4
BcaC02g09666 Brassica carinata HOM05D007347 ORTHO05D009296 1.5e-46 191.8 189 51.3
C04p45350 Brassica napus HOM05D007347 ORTHO05D009296 1.5e-46 191.8 189 51.3
BolC4t26117H Brassica oleracea HOM05D007347 ORTHO05D009296 1.5e-46 191.8 189 51.3
Aqoxy3G04330 Aquilegia oxysepala HOM05D007347 ORTHO05D009296 4.3e-46 190.3 162 56.8
Lalb_Chr19g0132391 Lupinus albus HOM05D007347 ORTHO05D009296 4.3e-46 190.3 185 51.9
A04p11620 Brassica napus HOM05D007347 ORTHO05D009296 5.6e-46 189.9 187 51.9
VMungo1127G1072 Vigna mungo HOM05D007347 ORTHO05D009296 9.5e-46 189.1 174 55.2
Manes.18G103700 Manihot esculenta HOM05D007347 ORTHO05D009296 4.7e-45 186.8 166 58.4
Nn3g18549 Nelumbo nucifera HOM05D007347 ORTHO05D009296 8.1e-45 186.0 178 51.7
Aa31LG9G16920 Aethionema arabicum HOM05D007347 ORTHO05D009296 3.4e-43 180.6 183 50.8
SHI25538 Sapria himalayana HOM05D002460 ORTHO05D002716 3.2e-41 174.1 170 52.9
Manes.02G063016 Manihot esculenta HOM05D002460 ORTHO05D002716 4.1e-41 173.7 167 55.7
SGA_v2.0_scaffold4G02364 Striga asiatica HOM05D007347 ORTHO05D009296 3.0e-39 167.5 125 64.8
FAN28G0832 Fragaria x ananassa HOM05D007347 ORTHO05D009296 3.9e-39 167.2 144 59.7
COL.COLO4_37044 Corchorus olitorius HOM05D007347 ORTHO05D009296 9.6e-38 162.5 131 61.1
ECA238G4434 Erigeron canadensis HOM05D007347 ORTHO05D009296 8.1e-37 159.5 106 76.4
AUR62036136 Chenopodium quinoa HOM05D007347 ORTHO05D009296 2.8e-29 134.4 105 61.9
Migut.M00355 Erythranthe guttata HOM05D005973 ORTHO05D007285 2.0e-27 128.3 70 88.6
CDE05G1387 Ceratophyllum demersum HOM05D007347 ORTHO05D009296 2.9e-26 124.4 132 44.7
MBI03_g13436_MAGBIO Magnolia biondii HOM05D007347 ORTHO05D009296 7.1e-25 119.8 100 59.0
Ca_23964_v3 Cicer arietinum L. HOM05D007347 ORTHO05D009296 4.3e-22 110.5 86 59.3
DCAR_010986 Daucus carota HOM05D007347 ORTHO05D009296 5.3e-20 103.6 95 48.4
SGA_v2.0_scaffold204G41677 Striga asiatica HOM05D007347 ORTHO05D009296 4.2e-17 94.0 143 42.7
Oeu033427.1 Olea europaea HOM05D007347 ORTHO05D009296 5.5e-17 93.6 69 65.2
MBI03_g44528_MAGBIO Magnolia biondii HOM05D007347 ORTHO05D009296 2.3e-15 88.2 131 35.1
CARHR264050 Cardamine hirsuta HOM05D007347 ORTHO05D009296 4.3e-14 84.0 66 59.1
Rhsim10G0062500 Rhododendron simsii HOM05D007347 ORTHO05D009296 6.2e-13 80.1 63 58.7
Prupe.2G102900 Prunus persica HOM05D007455 ORTHO05D009431 2.9e-10 71.2 127 33.9
Sp6g40500 Schrenkiella parvula HOM05D007455 ORTHO05D009431 6.5e-10 70.1 120 33.3
ATR0124G055 Amborella trichopoda HOM05D007347 ORTHO05D009296 1.4e-09 68.9 89 33.7
Zm00001eb259350 Zea mays HOM05D007347 ORTHO05D009296 1.4e-09 68.9 158 35.4
Actinidia09786 Actinidia chinensis HOM05D006931 ORTHO05D008782 4.2e-09 67.4 162 31.5
AL6G11100 Arabidopsis lyrata HOM05D007455 ORTHO05D009431 7.1e-09 66.6 118 29.7
Thhalv10012778m.g Eutrema salsugineum HOM05D007455 ORTHO05D009431 9.3e-09 66.2 118 33.1
arahy.Tifrunner.gnm1.ann1.DBR4AW Arachis hypogaea HOM05D007455 ORTHO05D009431 1.2e-08 65.9 119 31.1
CARHR211430 Cardamine hirsuta HOM05D007455 ORTHO05D009431 1.2e-08 65.9 118 31.4
arahy.Tifrunner.gnm1.ann1.U7VIMI Arachis hypogaea HOM05D007455 ORTHO05D009431 1.6e-08 65.5 119 31.1
CARHR283670 Cardamine hirsuta HOM05D007347 ORTHO05D009296 2.1e-08 65.1 39 71.8
TAR636G1848 Trochodendron aralioides HOM05D007455 ORTHO05D009431 2.1e-08 65.1 112 32.1
Carub.0006s0076 Capsella rubella HOM05D007455 ORTHO05D009431 2.7e-08 64.7 116 31.9
CSS0022782 Camellia sinensis var. sinensis HOM05D007455 ORTHO05D009431 3.5e-08 64.3 117 31.6
Eucgr.C02447 Eucalyptus grandis HOM05D007455 ORTHO05D009431 3.5e-08 64.3 117 30.8
Aqoxy1G00452 Aquilegia oxysepala HOM05D007455 ORTHO05D009431 4.6e-08 63.9 132 28.0
Cpa.g.sc211.20 Carica papaya HOM05D006931 ORTHO05D008782 4.6e-08 63.9 167 28.7
CiPaw.13G151600 Carya illinoinensis HOM05D007455 ORTHO05D009431 4.6e-08 63.9 117 31.6
Cfa009846 Carpinus fangiana HOM05D007455 ORTHO05D009431 6.0e-08 63.5 117 29.1
CSS0032219 Camellia sinensis var. sinensis HOM05D006931 ORTHO05D008782 7.9e-08 63.2 162 29.0
CSS0037608 Camellia sinensis var. sinensis HOM05D006931 ORTHO05D008782 7.9e-08 63.2 162 29.0
SEGI_21882 Sequoiadendron giganteum HOM05D007750 ORTHO05D009431 7.9e-08 63.2 129 27.9
BcaB01g06086 Brassica carinata HOM05D007455 ORTHO05D009431 1.0e-07 62.8 162 27.2
C03p00670 Brassica napus HOM05D007455 ORTHO05D009431 1.0e-07 62.8 159 27.7
BolC3t12630H Brassica oleracea HOM05D007455 ORTHO05D009431 1.0e-07 62.8 159 27.7
ClCG03G004730 Citrullus lanatus HOM05D002890 ORTHO05D009847 1.0e-07 62.8 183 25.1
MELO3C035731.2 Cucumis melo HOM05D002890 ORTHO05D009847 1.0e-07 62.8 182 27.5
PGR102G2888 Punica granatum HOM05D007455 ORTHO05D009431 1.0e-07 62.8 127 28.3
AUR62006535 Chenopodium quinoa HOM05D007455 ORTHO05D009431 1.3e-07 62.4 128 28.1
Gohir.D07G124600 Gossypium hirsutum HOM05D007455 ORTHO05D009431 1.8e-07 62.0 115 31.3
Potri.001G276500 Populus trichocarpa HOM05D007455 ORTHO05D009431 1.8e-07 62.0 117 31.6
QL04p014212 Quercus lobata HOM05D007455 ORTHO05D009431 1.8e-07 62.0 127 30.7
Rhsim13G0211000 Rhododendron simsii HOM05D007455 ORTHO05D009431 1.8e-07 62.0 117 31.6
RcHm_v2.0_Chr5g0050671 Rosa chinensis HOM05D007455 ORTHO05D009431 1.8e-07 62.0 127 30.7
Dinv26621 Davidia involucrata HOM05D006931 ORTHO05D008782 2.3e-07 61.6 131 28.2
ClCG03G012670 Citrullus lanatus HOM05D007455 ORTHO05D009431 3.0e-07 61.2 117 30.8
PSO384G2302 Papaver somniferum HOM05D007455 ORTHO05D009431 3.0e-07 61.2 132 26.5
CiPaw.03G073600 Carya illinoinensis HOM05D007545 ORTHO05D009579 3.9e-07 60.8 162 27.8
COL.COLO4_05199 Corchorus olitorius HOM05D007455 ORTHO05D009431 3.9e-07 60.8 128 30.5
Hma1.2p1_2484F.1_g323040 Hydrangea macrophylla HOM05D006931 ORTHO05D008782 3.9e-07 60.8 174 28.2
MD07G1079700 Malus domestica HOM05D007455 ORTHO05D009431 3.9e-07 60.8 127 31.5
EL10Ac4g10136 Beta vulgaris HOM05D007455 ORTHO05D009431 5.1e-07 60.5 125 28.8
EL10Ac4g10151 Beta vulgaris HOM05D007455 ORTHO05D009431 5.1e-07 60.5 125 28.8
PSO017G5257 Papaver somniferum HOM05D007545 ORTHO05D009579 5.1e-07 60.5 158 27.2
Sabra16G0170600 Salix brachista HOM05D007455 ORTHO05D009431 5.1e-07 60.5 117 31.6
Atru.chr3.2773 Acer truncatum HOM05D007455 ORTHO05D009431 6.7e-07 60.1 117 29.9
Cpa.g.sc84.2 Carica papaya HOM05D007455 ORTHO05D009431 6.7e-07 60.1 116 32.8
MBI05_g05281_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D009847 6.7e-07 60.1 183 24.0
ATR0829G035 Amborella trichopoda HOM05D007455 ORTHO05D009431 8.7e-07 59.7 105 31.4
BcaC09g50628 Brassica carinata HOM05D006931 ORTHO05D008782 8.7e-07 59.7 167 26.3
BolC1t02203H Brassica oleracea HOM05D003050 ORTHO05D003513 8.7e-07 59.7 167 26.3
Ca_06217_v3 Cicer arietinum L. HOM05D007455 ORTHO05D009431 8.7e-07 59.7 106 31.1
Hma1.2p1_0253F.1_g103010 Hydrangea macrophylla HOM05D006931 ORTHO05D008782 8.7e-07 59.7 174 28.2
C01p22740 Brassica napus HOM05D003050 ORTHO05D003513 1.1e-06 59.3 167 26.3
BraA01t01749Z Brassica rapa HOM05D003050 ORTHO05D003513 1.1e-06 59.3 167 26.9
Lsat_1_v5_gn_2_68461 Lactuca sativa HOM05D007545 ORTHO05D009579 1.1e-06 59.3 139 28.1
Lsat_1_v5_gn_9_106260 Lactuca sativa HOM05D007455 ORTHO05D009431 1.1e-06 59.3 127 26.8
Lj8P135T27 Lonicera japonica HOM05D006931 ORTHO05D008782 1.1e-06 59.3 131 26.7
MELO3C032020.2 Cucumis melo HOM05D007545 ORTHO05D009579 1.5e-06 58.9 144 25.0
Sp7g24650 Schrenkiella parvula HOM05D006931 ORTHO05D008782 1.5e-06 58.9 167 26.9
Hund04386 Selenicereus undatus HOM05D006931 ORTHO05D008782 1.5e-06 58.9 133 28.6
Carub.0007s1417 Capsella rubella HOM05D006931 ORTHO05D008782 1.9e-06 58.5 167 26.3
CAN.G113.7 Capsicum annuum HOM05D007455 ORTHO05D009431 2.5e-06 58.2 117 29.1
Cc01_g05470 Coffea canephora HOM05D007455 ORTHO05D009431 2.5e-06 58.2 114 28.9
Hund23024 Selenicereus undatus HOM05D006931 ORTHO05D008782 2.5e-06 58.2 133 28.6
AT4G26680 Arabidopsis thaliana HOM05D006931 ORTHO05D008782 4.3e-06 57.4 167 25.7
CARHR234290 Cardamine hirsuta HOM05D006931 ORTHO05D008782 4.3e-06 57.4 167 26.3
MELO3C025970.2 Cucumis melo HOM05D006931 ORTHO05D008782 4.3e-06 57.4 174 28.2
FAN11G1556 Fragaria x ananassa HOM05D007455 ORTHO05D009431 4.3e-06 57.4 127 32.3
Lj3g0013378 Lotus japonicus HOM05D006931 ORTHO05D008782 4.3e-06 57.4 167 27.5
Lj3g0024796 Lotus japonicus HOM05D006931 ORTHO05D008782 4.3e-06 57.4 167 27.5
PGSC0003DMG400001336 Solanum tuberosum HOM05D007455 ORTHO05D009431 4.3e-06 57.4 117 27.4
Cc05_g02580 Coffea canephora HOM05D006931 ORTHO05D008782 5.7e-06 57.0 133 30.1
FvH4_3g27950 Fragaria vesca HOM05D007455 ORTHO05D009431 5.7e-06 57.0 127 32.3
Thhalv10024897m.g Eutrema salsugineum HOM05D006931 ORTHO05D008782 7.4e-06 56.6 167 26.3
FAN16G2585 Fragaria x ananassa HOM05D007455 ORTHO05D009431 7.4e-06 56.6 127 32.3
Nitab4.5_0000276g0130 Nicotiana tabacum HOM05D007455 ORTHO05D009431 7.4e-06 56.6 117 27.4
Sc16g0011110 Simmondsia chinensis HOM05D007455 ORTHO05D009431 7.4e-06 56.6 127 28.3
GSVIVG01012774001 Vitis vinifera HOM05D007390 ORTHO05D009114 7.4e-06 56.6 146 25.3
AL7G26160 Arabidopsis lyrata HOM05D006931 ORTHO05D008782 9.7e-06 56.2 160 26.2
Cfa007791 Carpinus fangiana HOM05D007545 ORTHO05D009579 9.7e-06 56.2 162 25.9
MELO3C015131.2 Cucumis melo HOM05D007455 ORTHO05D009431 9.7e-06 56.2 117 29.1
CsaV3_6G009550 Cucumis sativus L. HOM05D006931 ORTHO05D008782 9.7e-06 56.2 174 27.6
PGSC0003DMG401009622 Solanum tuberosum HOM05D007455 ORTHO05D009431 9.7e-06 56.2 117 27.4


User provided reference genes

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