Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.G00520 Erythranthe guttata HOM05D004104 ORTHO05D004755 5.6e-78 294.3 157 100.0
SalBow3G2247 Salvia bowleyana HOM05D004104 ORTHO05D004755 7.1e-65 250.8 157 83.4
MSTRG.9892 Avicennia marina HOM05D004104 ORTHO05D004755 1.1e-57 226.9 143 82.5
Lsat_1_v5_gn_3_120420 Lactuca sativa HOM05D004104 ORTHO05D004755 1.8e-52 209.5 155 69.7
HanXRQChr03g0091411 Helianthus annuus HOM05D004104 ORTHO05D004755 6.9e-52 207.6 155 68.4
Dinv27050 Davidia involucrata HOM05D004104 ORTHO05D004755 2.0e-51 206.1 155 69.7
Cc03_g05510 Coffea canephora HOM05D004104 ORTHO05D004755 5.9e-51 204.5 155 71.0
ECA240G4332 Erigeron canadensis HOM05D004104 ORTHO05D004755 2.9e-50 202.2 155 66.5
GSVIVG01027809001 Vitis vinifera HOM05D004104 ORTHO05D004755 5.0e-50 201.4 151 70.2
Solyc09g090120.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 2.7e-48 195.7 154 68.2
Sopen09g033030 Solanum pennellii HOM05D004104 ORTHO05D004755 3.6e-48 195.3 154 68.2
CiPaw.01G185000 Carya illinoinensis HOM05D004104 ORTHO05D004755 6.1e-48 194.5 155 68.4
Nitab4.5_0001005g0090 Nicotiana tabacum HOM05D004104 ORTHO05D004755 1.0e-47 193.7 154 67.5
Rhsim02G0037300 Rhododendron simsii HOM05D004104 ORTHO05D004755 1.8e-47 193.0 155 65.2
vmacro15441 Vaccinium macrocarpon HOM05D004104 ORTHO05D004755 3.0e-47 192.2 152 67.1
Nitab4.5_0000044g0340 Nicotiana tabacum HOM05D004104 ORTHO05D004755 8.8e-47 190.7 154 66.9
Manes.12G032000 Manihot esculenta HOM05D004104 ORTHO05D004755 7.4e-46 187.6 155 66.5
Haze_11377 Corylus avellana HOM05D004104 ORTHO05D004755 1.3e-45 186.8 155 64.5
Duzib052G0511 Durio zibethinus HOM05D004104 ORTHO05D004755 2.2e-45 186.0 153 67.3
TWI12G1345 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 2.2e-45 186.0 155 65.2
Cpa.g.sc50.23 Carica papaya HOM05D004104 ORTHO05D004755 6.3e-45 184.5 155 64.5
Actinidia01846 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.8e-44 183.0 154 62.3
Psat6g055120 Pisum sativum HOM05D004104 ORTHO05D004755 1.8e-44 183.0 155 63.2
Ca_09682_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 2.4e-44 182.6 155 63.2
Potri.005G223900 Populus trichocarpa HOM05D004104 ORTHO05D004755 2.4e-44 182.6 155 65.2
Atru.chr4.2063 Acer truncatum HOM05D004104 ORTHO05D004755 4.1e-44 181.8 157 64.3
Glyma.10G036900 Glycine max HOM05D004104 ORTHO05D004755 4.1e-44 181.8 155 63.9
Phvul.007G193100 Phaseolus vulgaris HOM05D004104 ORTHO05D004755 4.1e-44 181.8 155 63.2
VMungo0720G2373 Vigna mungo HOM05D004104 ORTHO05D004755 4.1e-44 181.8 155 63.2
Lalb_Chr21g0313851 Lupinus albus HOM05D004104 ORTHO05D004755 6.9e-44 181.0 155 62.6
Potri.002G038700 Populus trichocarpa HOM05D004104 ORTHO05D004755 9.1e-44 180.6 155 63.9
Prupe.8G224100 Prunus persica HOM05D004104 ORTHO05D004755 9.1e-44 180.6 155 63.9
QL09p038638 Quercus lobata HOM05D004104 ORTHO05D004755 1.5e-43 179.9 155 62.6
SGA_v2.0_scaffold67G22747 Striga asiatica HOM05D004104 ORTHO05D004755 1.5e-43 179.9 157 65.0
Thecc.04G255000 Theobroma cacao HOM05D004104 ORTHO05D004755 1.5e-43 179.9 153 65.4
Atru.chr5.1672 Acer truncatum HOM05D004104 ORTHO05D004755 2.0e-43 179.5 156 62.8
Duzib151G0362 Durio zibethinus HOM05D004104 ORTHO05D004755 2.0e-43 179.5 153 65.4
Medtr1g069925 Medicago truncatula HOM05D004104 ORTHO05D004755 2.0e-43 179.5 155 61.9
TPR.G24709 Trifolium pratense HOM05D004104 ORTHO05D004755 2.6e-43 179.1 157 61.8
unitig_21.g20174 Utricularia gibba HOM05D004104 ORTHO05D004755 2.6e-43 179.1 153 66.0
PSO357G0016 Papaver somniferum HOM05D004104 ORTHO05D004755 3.4e-43 178.7 157 63.7
COL.COLO4_15874 Corchorus olitorius HOM05D004104 ORTHO05D004755 4.5e-43 178.3 153 64.7
GSVIVG01028325001 Vitis vinifera HOM05D004104 ORTHO05D004755 4.5e-43 178.3 155 60.6
Sed0024271 Sechium edule HOM05D004104 ORTHO05D004755 5.9e-43 177.9 155 60.0
Aqoxy2G03638 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 7.7e-43 177.6 155 64.5
Ca_09886_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 7.7e-43 177.6 155 63.2
Gohir.D02G045400 Gossypium hirsutum HOM05D004104 ORTHO05D004755 7.7e-43 177.6 153 64.1
Gorai.005G050100 Gossypium raimondii HOM05D004104 ORTHO05D004755 7.7e-43 177.6 153 64.1
arahy.Tifrunner.gnm1.ann1.QEJR01 Arachis hypogaea HOM05D004104 ORTHO05D004755 1.0e-42 177.2 155 61.3
CsaV3_7G027350 Cucumis sativus L. HOM05D004104 ORTHO05D004755 1.0e-42 177.2 155 59.4
PSO170G1063 Papaver somniferum HOM05D004104 ORTHO05D004755 1.3e-42 176.8 157 63.1
arahy.Tifrunner.gnm1.ann1.0Z487T Arachis hypogaea HOM05D000348 ORTHO05D000244 1.7e-42 176.4 152 63.2
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 1.7e-42 176.4 155 59.4
CiPaw.03G263800 Carya illinoinensis HOM05D004104 ORTHO05D004755 2.9e-42 175.6 155 61.3
Haze_24627 Corylus avellana HOM05D005758 ORTHO05D007218 2.9e-42 175.6 146 63.0
Aa31LG9G2930 Aethionema arabicum HOM05D004104 ORTHO05D004755 6.5e-42 174.5 154 63.0
Gohir.A02G039300 Gossypium hirsutum HOM05D004104 ORTHO05D004755 6.5e-42 174.5 153 63.4
TPR.G6322 Trifolium pratense HOM05D004104 ORTHO05D004755 6.5e-42 174.5 157 60.5
arahy.Tifrunner.gnm1.ann1.6K1PAL Arachis hypogaea HOM05D000348 ORTHO05D000244 8.5e-42 174.1 152 62.5
Thecc.01G258800 Theobroma cacao HOM05D004104 ORTHO05D004755 1.4e-41 173.3 156 64.1
Lj5g0006581 Lotus japonicus HOM05D004104 ORTHO05D004755 1.9e-41 172.9 154 61.0
Sabra02G0031000 Salix brachista HOM05D004104 ORTHO05D004755 2.5e-41 172.6 155 61.9
Aqoxy2G03648 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 3.2e-41 172.2 147 66.0
TAR636G3439 Trochodendron aralioides HOM05D004104 ORTHO05D004755 5.5e-41 171.4 151 62.3
Glyma.13G123300 Glycine max HOM05D004104 ORTHO05D004755 9.4e-41 170.6 141 65.2
MD10G1184400 Malus domestica HOM05D004104 ORTHO05D004755 1.2e-40 170.2 150 64.7
SEGI_09266 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 1.6e-40 169.9 151 60.9
Gohir.A08G190000 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.7e-40 169.1 156 64.7
QL06p017873 Quercus lobata HOM05D004104 ORTHO05D004755 2.7e-40 169.1 155 61.3
AT4G14385 Arabidopsis thaliana HOM05D004104 ORTHO05D004755 3.6e-40 168.7 155 63.9
Eucgr.K03263 Eucalyptus grandis HOM05D004104 ORTHO05D004755 3.6e-40 168.7 155 61.9
CANSAT01G3088 Cannabis sativa HOM05D004104 ORTHO05D004755 4.7e-40 168.3 155 60.6
Rhsim01G0264300 Rhododendron simsii HOM05D004104 ORTHO05D004755 4.7e-40 168.3 155 61.9
THA.LOC104822244 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 4.7e-40 168.3 153 62.1
AL7G41830 Arabidopsis lyrata HOM05D004104 ORTHO05D004755 1.4e-39 166.8 154 63.6
PGR044G0499 Punica granatum HOM05D004104 ORTHO05D004755 1.4e-39 166.8 155 60.6
RcHm_v2.0_Chr6g0288171 Rosa chinensis HOM05D004104 ORTHO05D004755 2.3e-39 166.0 147 62.6
CDE04G2476 Ceratophyllum demersum HOM05D004104 ORTHO05D004755 3.0e-39 165.6 155 58.7
Gohir.D08G208500 Gossypium hirsutum HOM05D004104 ORTHO05D004755 3.0e-39 165.6 156 63.5
Gorai.004G220900 Gossypium raimondii HOM05D004104 ORTHO05D004755 3.0e-39 165.6 156 63.5
MD05G1197800 Malus domestica HOM05D004104 ORTHO05D004755 3.9e-39 165.2 154 61.7
Ciclev10006103m.g Citrus clementina HOM05D004104 ORTHO05D004755 2.0e-38 162.9 157 57.3
FAN15G0777 Fragaria x ananassa HOM05D005758 ORTHO05D007218 3.3e-38 162.2 155 60.0
Duzib211G0552 Durio zibethinus HOM05D004104 ORTHO05D004755 4.4e-38 161.8 156 60.9
FAN27G1683 Fragaria x ananassa HOM05D005758 ORTHO05D007218 4.4e-38 161.8 155 60.0
FAN20G0124 Fragaria x ananassa HOM05D004104 ORTHO05D004755 7.4e-38 161.0 155 59.4
AUR62011875 Chenopodium quinoa HOM05D004104 ORTHO05D004755 1.3e-37 160.2 155 57.4
Cc06_g07960 Coffea canephora HOM05D004104 ORTHO05D004755 1.7e-37 159.8 155 60.6
EL10Ac5g10403 Beta vulgaris HOM05D004104 ORTHO05D004755 3.7e-37 158.7 155 57.4
Os01g0233400 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 3.7e-37 158.7 143 61.5
Os12g0298600 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 3.7e-37 158.7 143 61.5
Hund02913 Selenicereus undatus HOM05D004104 ORTHO05D004755 6.3e-37 157.9 160 57.5
Actinidia25786 Actinidia chinensis HOM05D004104 ORTHO05D004755 8.2e-37 157.5 156 59.0
Nitab4.5_0009483g0030 Nicotiana tabacum HOM05D004104 ORTHO05D004755 1.8e-36 156.4 155 55.5
Oeu011497.1 Olea europaea HOM05D004104 ORTHO05D004755 2.4e-36 156.0 102 80.4
TAR365G1233 Trochodendron aralioides HOM05D004104 ORTHO05D004755 7.0e-36 154.5 149 58.4
CSS0037223 Camellia sinensis var. sinensis HOM05D004104 ORTHO05D004755 1.2e-35 153.7 155 58.7
Migut.D00423 Erythranthe guttata HOM05D004104 ORTHO05D004755 1.2e-35 153.7 155 58.7
Manes.03G164300 Manihot esculenta HOM05D004104 ORTHO05D004755 1.2e-35 153.7 141 58.9
Nitab4.5_0000470g0160 Nicotiana tabacum HOM05D004104 ORTHO05D004755 1.2e-35 153.7 155 54.8
Ciclev10023660m.g Citrus clementina HOM05D004104 ORTHO05D004755 2.0e-35 152.9 171 54.4
Solyc09g072580.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 2.6e-35 152.5 155 56.1
Sopen09g028390 Solanum pennellii HOM05D004104 ORTHO05D004755 2.6e-35 152.5 155 56.1
PGSC0003DMG400010299 Solanum tuberosum HOM05D004104 ORTHO05D004755 2.6e-35 152.5 155 56.1
CARHR220610 Cardamine hirsuta HOM05D004104 ORTHO05D004755 1.0e-34 150.6 151 57.0
Nn3g19649 Nelumbo nucifera HOM05D004104 ORTHO05D004755 1.0e-34 150.6 123 65.0
Actinidia32304 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.7e-34 149.8 124 64.5
Carub.0007s2785 Capsella rubella HOM05D004104 ORTHO05D004755 2.2e-34 149.4 151 56.3
Thhalv10026437m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 2.2e-34 149.4 151 57.0
Sabra05G0172700 Salix brachista HOM05D004104 ORTHO05D004755 2.2e-34 149.4 220 44.5
MSTRG.18320 Avicennia marina HOM05D004104 ORTHO05D004755 3.8e-34 148.7 155 58.7
SalBow4G1878 Salvia bowleyana HOM05D004104 ORTHO05D004755 3.8e-34 148.7 155 58.1
MSTRG.21496 Avicennia marina HOM05D004104 ORTHO05D004755 8.5e-34 147.5 155 58.1
A04p07650 Brassica napus HOM05D004104 ORTHO05D004755 1.1e-33 147.1 180 52.8
COL.COLO4_05896 Corchorus olitorius HOM05D005758 ORTHO05D007218 1.1e-33 147.1 129 64.3
SGA_v2.0_scaffold1G00613 Striga asiatica HOM05D004104 ORTHO05D004755 1.5e-33 146.7 155 58.1
Hund11888 Selenicereus undatus HOM05D004104 ORTHO05D004755 1.9e-33 146.4 124 64.5
Mapoly0055s0054 Marchantia polymorpha HOM05D004104 ORTHO05D004755 3.2e-33 145.6 150 56.7
BolC4t25712H Brassica oleracea HOM05D004104 ORTHO05D004755 4.2e-33 145.2 112 68.8
TWI18G1001 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 4.2e-33 145.2 159 52.8
SGA_v2.0_scaffold138G35232 Striga asiatica HOM05D000374 ORTHO05D000238 5.5e-33 144.8 153 54.9
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 1.6e-32 143.3 156 57.1
BcaB02g08611 Brassica carinata HOM05D004104 ORTHO05D004755 3.6e-32 142.1 154 55.2
HPP92_004791 Vanilla planifolia HOM05D004104 ORTHO05D004755 3.6e-32 142.1 121 65.3
AagrBONN_evm.TU.Sc2ySwM_368.1944 Anthoceros agrestis HOM05D004104 ORTHO05D004755 6.1e-32 141.4 143 57.3
BcaC02g09319 Brassica carinata HOM05D004104 ORTHO05D004755 8.0e-32 141.0 150 56.0
C04p41340 Brassica napus HOM05D004104 ORTHO05D004755 8.0e-32 141.0 150 56.0
BraA04t16456Z Brassica rapa HOM05D004104 ORTHO05D004755 8.0e-32 141.0 150 56.0
FvH4_2g21510 Fragaria vesca HOM05D005758 ORTHO05D007218 8.0e-32 141.0 199 46.7
Sp7g12470 Schrenkiella parvula HOM05D004104 ORTHO05D004755 1.4e-31 140.2 150 54.7
Dinv29861 Davidia involucrata HOM05D004104 ORTHO05D004755 4.0e-31 138.7 98 72.4
HanXRQChr04g0112651 Helianthus annuus HOM05D004104 ORTHO05D004755 4.0e-31 138.7 155 49.7
Lsat_1_v5_gn_8_92980 Lactuca sativa HOM05D004104 ORTHO05D004755 8.8e-31 137.5 149 52.3
Pp3c8_15220 Physcomitrium patens HOM05D004104 ORTHO05D004755 2.0e-30 136.3 155 53.5
Pp3c24_15450 Physcomitrium patens HOM05D004104 ORTHO05D004755 7.5e-30 134.4 155 52.3
Gohir.A07G212800 Gossypium hirsutum HOM05D004104 ORTHO05D004755 9.7e-30 134.0 156 53.8
AagrBONN_evm.TU.Sc2ySwM_228.2514 Anthoceros agrestis HOM05D004104 ORTHO05D004755 1.3e-29 133.7 143 53.8
HPP92_008311 Vanilla planifolia HOM05D004104 ORTHO05D004755 1.3e-29 133.7 143 51.7
Ah.13g072460 Amaranthus hybridus HOM05D004104 ORTHO05D004755 4.1e-28 128.6 117 59.8
ECA236G2125 Erigeron canadensis HOM05D004104 ORTHO05D004755 4.1e-28 128.6 139 51.8
PGSC0003DMG400017224 Solanum tuberosum HOM05D004104 ORTHO05D004755 7.0e-28 127.9 167 49.1
SEGI_16929 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 1.2e-27 127.1 107 65.4
Manes.13G033700 Manihot esculenta HOM05D004104 ORTHO05D004755 1.6e-27 126.7 97 68.0
Peaxi162Scf00543g00310 Petunia axillaris HOM05D004104 ORTHO05D004755 2.0e-27 126.3 144 51.4
CBR_g31961 Chara braunii HOM05D004104 ORTHO05D004755 5.9e-27 124.8 154 48.7
Gorai.001G253400 Gossypium raimondii HOM05D004104 ORTHO05D004755 7.7e-27 124.4 164 49.4
AUR62002135 Chenopodium quinoa HOM05D004104 ORTHO05D004755 1.7e-26 123.2 174 46.0
arahy.Tifrunner.gnm1.ann1.2HR6HW Arachis hypogaea HOM05D004104 ORTHO05D004755 2.2e-26 122.9 182 45.1
THA.LOC104825277 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 2.9e-26 122.5 164 48.2
MBI10_g37181_MAGBIO Magnolia biondii HOM05D004104 ORTHO05D004755 3.8e-26 122.1 120 57.5
THA.LOC104825278 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 5.0e-26 121.7 93 67.7
Sc24g0003130 Simmondsia chinensis HOM05D004104 ORTHO05D004755 2.5e-25 119.4 93 64.5
AUR62015575 Chenopodium quinoa HOM05D004104 ORTHO05D004755 3.2e-25 119.0 125 57.6
Ah.04g155820 Amaranthus hybridus HOM05D004104 ORTHO05D004755 4.2e-25 118.6 132 54.5
Ah.11g049720 Amaranthus hybridus HOM05D004104 ORTHO05D004755 9.4e-25 117.5 116 57.8
Lj1A66T60 Lonicera japonica HOM05D004104 ORTHO05D004755 1.2e-24 117.1 157 46.5
EL10Ac3g05008 Beta vulgaris HOM05D004104 ORTHO05D004755 2.7e-24 115.9 145 49.0
CAN.G2012.3 Capsicum annuum HOM05D004104 ORTHO05D004755 2.7e-24 115.9 86 68.6
MELO3C015732.2 Cucumis melo HOM05D004104 ORTHO05D004755 3.6e-24 115.5 267 33.3
Peaxi162Scf00855g00233 Petunia axillaris HOM05D004104 ORTHO05D004755 1.8e-23 113.2 166 45.8
Gohir.D07G218900 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.6e-22 109.4 94 63.8
Dinv34620 Davidia involucrata HOM05D004104 ORTHO05D004755 1.4e-20 103.6 155 42.6
Duzib138G1233 Durio zibethinus HOM05D004104 ORTHO05D004755 1.8e-20 103.2 156 46.2
Thhalv10002280m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 2.8e-16 89.4 89 64.0
MCO10G151 Micromonas commoda HOM05D004104 ORTHO05D004755 1.0e-15 87.4 77 54.5
Thhalv10029502m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 2.0e-14 83.2 89 58.4
Zm00001eb188390 Zea mays HOM05D004104 ORTHO05D004755 2.6e-14 82.8 59 69.5
Gohir.D03G080833 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.4e-12 76.3 64 60.9
Gorai.003G083000 Gossypium raimondii HOM05D004104 ORTHO05D004755 7.0e-12 74.7 64 60.9
CAN.G896.9 Capsicum annuum HOM05D004104 ORTHO05D004755 1.6e-11 73.6 86 53.5
PRCOL_00002727 Prasinoderma coloniale HOM05D004104 ORTHO05D004755 1.6e-11 73.6 82 45.1
Actinidia11346 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.0e-10 70.9 66 56.1
Aqoxy2G03647 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 6.1e-08 61.6 97 43.3
Cre07.g328450 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 1.4e-07 60.5 76 46.1
THA.LOC104825261 Tarenaya hassleriana HOM05D013951 ORTHO05D021024 2.3e-07 59.7 41 70.7


User provided reference genes

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