Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.G00171 Erythranthe guttata HOM05D004362 ORTHO05D005650 5.5e-104 380.9 189 100.0
SGA_v2.0_scaffold166G38354 Striga asiatica HOM05D004362 ORTHO05D005650 3.1e-99 365.2 189 93.7
SGA_v2.0_scaffold67G22647 Striga asiatica HOM05D004362 ORTHO05D005650 1.3e-97 359.8 188 92.0
unitig_88.g27714 Utricularia gibba HOM05D004362 ORTHO05D005650 2.9e-97 358.6 189 92.1
SalBow2G1272 Salvia bowleyana HOM05D004362 ORTHO05D005650 2.1e-95 352.4 189 89.4
MSTRG.3927 Avicennia marina HOM05D004362 ORTHO05D005650 1.8e-94 349.4 189 90.5
Oeu027731.1 Olea europaea HOM05D004362 ORTHO05D005650 2.9e-89 332.0 189 85.7
Cc00_g10540 Coffea canephora HOM05D004362 ORTHO05D005650 2.7e-87 325.5 189 86.8
CAN.G134.195 Capsicum annuum HOM05D004362 ORTHO05D005650 1.7e-84 316.2 189 83.1
DCAR_003777 Daucus carota HOM05D004362 ORTHO05D005650 4.8e-84 314.7 189 83.6
Peaxi162Scf00399g00066 Petunia axillaris HOM05D004362 ORTHO05D005650 1.1e-83 313.5 189 83.1
Rhsim04G0220600 Rhododendron simsii HOM05D004362 ORTHO05D005650 1.8e-83 312.8 189 83.6
CSS0031921 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 3.1e-83 312.0 189 83.1
CSS0044915 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 3.1e-83 312.0 189 83.1
Sopen01g041670 Solanum pennellii HOM05D004362 ORTHO05D005650 5.4e-83 311.2 189 82.5
vmacro08137 Vaccinium macrocarpon HOM05D004362 ORTHO05D005650 5.4e-83 311.2 189 83.1
Actinidia01468 Actinidia chinensis HOM05D004362 ORTHO05D005650 7.0e-83 310.8 189 83.6
Solyc01g098100.2 Solanum lycopersicum HOM05D004362 ORTHO05D005650 7.0e-83 310.8 189 82.5
Sopen00g012890 Solanum pennellii HOM05D004362 ORTHO05D005650 7.0e-83 310.8 189 82.5
PGSC0003DMG400022496 Solanum tuberosum HOM05D004362 ORTHO05D005650 9.1e-83 310.5 189 82.0
Nitab4.5_0000250g0130 Nicotiana tabacum HOM05D004362 ORTHO05D005650 1.2e-82 310.1 189 81.0
Aqoxy2G03013 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 5.9e-82 307.8 189 81.0
Lsat_1_v5_gn_7_66041 Lactuca sativa HOM05D004362 ORTHO05D005650 5.9e-82 307.8 189 81.0
Nn8g40841 Nelumbo nucifera HOM05D004362 ORTHO05D005650 5.9e-82 307.8 189 82.0
TAR362G1261 Trochodendron aralioides HOM05D004362 ORTHO05D005650 7.7e-82 307.4 189 81.5
Nitab4.5_0002393g0040 Nicotiana tabacum HOM05D004362 ORTHO05D005650 1.0e-81 307.0 189 79.4
HanXRQChr05g0151141 Helianthus annuus HOM05D004362 ORTHO05D005650 1.3e-81 306.6 189 79.9
HanXRQChr15g0467261 Helianthus annuus HOM05D004362 ORTHO05D005650 1.3e-81 306.6 189 79.9
TAR633G1411 Trochodendron aralioides HOM05D004362 ORTHO05D005650 1.3e-81 306.6 189 81.5
Lj6P674T13 Lonicera japonica HOM05D004362 ORTHO05D005650 2.3e-81 305.8 189 81.0
Hma1.2p1_0698F.1_g205210 Hydrangea macrophylla HOM05D004362 ORTHO05D005650 2.9e-81 305.4 189 81.0
Aqoxy5G03978 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 1.1e-80 303.5 189 80.4
ECA246G2248 Erigeron canadensis HOM05D004362 ORTHO05D005650 1.9e-80 302.8 189 78.3
CARHR290260 Cardamine hirsuta HOM05D004362 ORTHO05D005650 3.3e-80 302.0 189 80.4
Manes.03G194200 Manihot esculenta HOM05D004362 ORTHO05D005650 5.5e-80 301.2 189 78.8
PSO063G3233 Papaver somniferum HOM05D004362 ORTHO05D005650 7.2e-80 300.8 189 79.9
PSO170G0314 Papaver somniferum HOM05D004362 ORTHO05D005650 7.2e-80 300.8 189 79.9
PSO675G6259 Papaver somniferum HOM05D004362 ORTHO05D005650 7.2e-80 300.8 189 79.9
A03p49320 Brassica napus HOM05D004362 ORTHO05D005650 9.5e-80 300.4 189 79.9
BraA03t14033Z Brassica rapa HOM05D004362 ORTHO05D005650 9.5e-80 300.4 189 79.9
PSO541G6165 Papaver somniferum HOM05D004362 ORTHO05D005650 9.5e-80 300.4 189 79.4
Nn4g25890 Nelumbo nucifera HOM05D004362 ORTHO05D005650 1.2e-79 300.1 189 80.4
THA.LOC104820258 Tarenaya hassleriana HOM05D004362 ORTHO05D005650 1.2e-79 300.1 189 81.0
ATR0706G220 Amborella trichopoda HOM05D004362 ORTHO05D005650 1.6e-79 299.7 189 77.8
BcaC06g32960 Brassica carinata HOM05D004362 ORTHO05D005650 1.6e-79 299.7 189 79.9
C07p47390 Brassica napus HOM05D004362 ORTHO05D005650 1.6e-79 299.7 189 79.9
BolC7t45266H Brassica oleracea HOM05D004362 ORTHO05D005650 1.6e-79 299.7 189 79.9
CANSAT11G1206 Cannabis sativa HOM05D004362 ORTHO05D005650 1.6e-79 299.7 189 79.9
CANSAT56G3245 Cannabis sativa HOM05D004362 ORTHO05D005650 1.6e-79 299.7 189 79.9
Manes.15G013200 Manihot esculenta HOM05D004362 ORTHO05D005650 2.1e-79 299.3 189 77.8
BcaC07g37931 Brassica carinata HOM05D004362 ORTHO05D005650 4.7e-79 298.1 189 79.4
A08p11960 Brassica napus HOM05D004362 ORTHO05D005650 4.7e-79 298.1 189 79.4
BraA08t33187Z Brassica rapa HOM05D004362 ORTHO05D005650 4.7e-79 298.1 189 79.4
BcaC06g32963 Brassica carinata HOM05D004362 ORTHO05D005650 6.1e-79 297.7 189 79.4
Sp7g14130 Schrenkiella parvula HOM05D004362 ORTHO05D005650 1.0e-78 297.0 189 79.4
Cpa.g.sc16.164 Carica papaya HOM05D004362 ORTHO05D005650 1.4e-78 296.6 189 78.3
Ciclev10005994m.g Citrus clementina HOM05D004362 ORTHO05D005650 1.4e-78 296.6 189 78.8
Aa31LG10G6340 Aethionema arabicum HOM05D004362 ORTHO05D005650 1.8e-78 296.2 189 79.4
Sed0020990 Sechium edule HOM05D004362 ORTHO05D005650 2.3e-78 295.8 189 78.3
MD03G1177300 Malus domestica HOM05D004362 ORTHO05D005650 3.0e-78 295.4 189 78.8
SEGI_37753 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 3.0e-78 295.4 189 76.7
BolC1t02658H Brassica oleracea HOM05D004362 ORTHO05D005650 4.0e-78 295.0 189 78.8
Dinv29769 Davidia involucrata HOM05D004362 ORTHO05D005650 4.0e-78 295.0 181 81.2
CiPaw.01G149400 Carya illinoinensis HOM05D004362 ORTHO05D005650 5.2e-78 294.7 189 78.3
A01p21760 Brassica napus HOM05D004362 ORTHO05D005650 6.8e-78 294.3 189 78.3
BraA01t02085Z Brassica rapa HOM05D004362 ORTHO05D005650 6.8e-78 294.3 189 78.3
MELO3C006657.2 Cucumis melo HOM05D004362 ORTHO05D005650 6.8e-78 294.3 189 78.3
Thhalv10026330m.g Eutrema salsugineum HOM05D004362 ORTHO05D005650 6.8e-78 294.3 189 78.3
FvH4_4g00380 Fragaria vesca HOM05D004362 ORTHO05D005650 8.9e-78 293.9 189 78.3
RcHm_v2.0_Chr7g0221961 Rosa chinensis HOM05D004362 ORTHO05D005650 8.9e-78 293.9 189 77.8
BcaC09g50269 Brassica carinata HOM05D004362 ORTHO05D005650 1.2e-77 293.5 191 79.1
C01p27110 Brassica napus HOM05D004362 ORTHO05D005650 1.2e-77 293.5 191 79.1
BolC8t48316H Brassica oleracea HOM05D004362 ORTHO05D005650 1.2e-77 293.5 189 77.2
FAN22G1477 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.2e-77 293.5 189 78.3
RcHm_v2.0_Chr1g0332291 Rosa chinensis HOM05D004362 ORTHO05D005650 1.2e-77 293.5 189 77.8
AL7G39540 Arabidopsis lyrata HOM05D004362 ORTHO05D005650 1.5e-77 293.1 189 78.3
AT4G15770 Arabidopsis thaliana HOM05D004362 ORTHO05D005650 1.5e-77 293.1 189 78.3
Carub.0007s2590 Capsella rubella HOM05D004362 ORTHO05D005650 1.5e-77 293.1 189 78.3
FvH4_6g25030 Fragaria vesca HOM05D004362 ORTHO05D005650 2.0e-77 292.7 189 77.8
FAN17G1564 Fragaria x ananassa HOM05D004362 ORTHO05D005650 2.0e-77 292.7 189 77.8
Prupe.3G093900 Prunus persica HOM05D004362 ORTHO05D005650 2.0e-77 292.7 189 78.3
CsaV3_3G014560 Cucumis sativus L. HOM05D004362 ORTHO05D005650 2.6e-77 292.4 189 77.8
Glyma.05G031500 Glycine max HOM05D004362 ORTHO05D005650 2.6e-77 292.4 189 76.2
Glyma.17G095400 Glycine max HOM05D004362 ORTHO05D005650 2.6e-77 292.4 189 76.2
MD17G1218500 Malus domestica HOM05D004362 ORTHO05D005650 2.6e-77 292.4 189 78.3
Lj6g0015098 Lotus japonicus HOM05D004362 ORTHO05D005650 3.4e-77 292.0 189 77.8
Atru.chr4.2815 Acer truncatum HOM05D004362 ORTHO05D005650 4.4e-77 291.6 189 76.7
QL06p008685 Quercus lobata HOM05D004362 ORTHO05D005650 4.4e-77 291.6 188 78.2
VMungo1383G0988 Vigna mungo HOM05D004362 ORTHO05D005650 1.3e-76 290.0 189 76.2
Phvul.003G104500 Phaseolus vulgaris HOM05D004362 ORTHO05D005650 1.7e-76 289.7 189 76.2
Cfa015376 Carpinus fangiana HOM05D004362 ORTHO05D005650 2.8e-76 288.9 189 77.8
Haze_01219 Corylus avellana HOM05D004362 ORTHO05D005650 2.8e-76 288.9 189 77.8
Eucgr.L03020 Eucalyptus grandis HOM05D004362 ORTHO05D005650 2.8e-76 288.9 189 76.7
Ca_15496_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 3.7e-76 288.5 189 76.2
PGR031G1479 Punica granatum HOM05D004362 ORTHO05D005650 3.7e-76 288.5 189 77.2
Medtr3g112090 Medicago truncatula HOM05D004362 ORTHO05D005650 4.9e-76 288.1 189 76.2
TPR.G3221 Trifolium pratense HOM05D004362 ORTHO05D005650 4.9e-76 288.1 189 75.1
TWI53G0131 Tripterygium wilfordii HOM05D004362 ORTHO05D005650 6.3e-76 287.7 189 76.7
Thecc.04G283400 Theobroma cacao HOM05D004362 ORTHO05D005650 8.3e-76 287.3 186 76.9
arahy.Tifrunner.gnm1.ann1.F4LE79 Arachis hypogaea HOM05D004362 ORTHO05D005650 1.1e-75 287.0 189 76.2
CDE05G0863 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 1.1e-75 287.0 189 74.6
Potri.010G024400 Populus trichocarpa HOM05D004362 ORTHO05D005650 1.1e-75 287.0 189 75.1
Duzib052G0564 Durio zibethinus HOM05D004362 ORTHO05D005650 1.8e-75 286.2 186 76.9
CDE05G1737 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 2.4e-75 285.8 189 74.6
Duzib212G1021 Durio zibethinus HOM05D004362 ORTHO05D005650 2.4e-75 285.8 186 76.9
Gohir.D01G023472 Gossypium hirsutum HOM05D004362 ORTHO05D005650 2.4e-75 285.8 186 76.3
Gorai.002G028000 Gossypium raimondii HOM05D004362 ORTHO05D005650 2.4e-75 285.8 186 76.3
Sabra10G0014700 Salix brachista HOM05D004362 ORTHO05D005650 3.1e-75 285.4 189 74.1
Ca_21528_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 5.4e-75 284.6 189 74.1
Sed0024198 Sechium edule HOM05D004362 ORTHO05D005650 7.0e-75 284.3 189 74.1
TPR.G12330 Trifolium pratense HOM05D004362 ORTHO05D005650 7.0e-75 284.3 189 74.6
Gohir.A01G031201 Gossypium hirsutum HOM05D004362 ORTHO05D005650 2.0e-74 282.7 186 75.8
Lalb_Chr07g0177681 Lupinus albus HOM05D004362 ORTHO05D005650 2.7e-74 282.3 189 74.1
HPP92_025218 Vanilla planifolia HOM05D004362 ORTHO05D005650 5.9e-74 281.2 189 73.5
Potri.008G209600 Populus trichocarpa HOM05D004362 ORTHO05D005650 1.0e-73 280.4 189 74.6
SHI00272 Sapria himalayana HOM05D004362 ORTHO05D005650 1.3e-73 280.0 189 73.5
FAN12G1395 Fragaria x ananassa HOM05D002675 ORTHO05D003322 8.6e-73 277.3 180 77.2
CDE05G2612 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 1.1e-72 276.9 181 74.6
Psat7g055160 Pisum sativum HOM05D004362 ORTHO05D005650 1.9e-72 276.2 189 73.5
EL10Ac1g01907 Beta vulgaris HOM05D004362 ORTHO05D005650 2.8e-71 272.3 191 74.3
Ah.05g167830 Amaranthus hybridus HOM05D004362 ORTHO05D005650 3.6e-71 271.9 189 72.5
Sc19g0005120 Simmondsia chinensis HOM05D004362 ORTHO05D005650 4.7e-71 271.6 189 74.6
AUR62010283 Chenopodium quinoa HOM05D004362 ORTHO05D005650 8.0e-71 270.8 191 73.8
BcaB04g18325 Brassica carinata HOM05D004362 ORTHO05D005650 1.4e-70 270.0 189 74.6
Mapoly0063s0083 Marchantia polymorpha HOM05D004362 ORTHO05D005650 1.7e-68 263.1 189 68.3
SMO361G0267 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 1.9e-67 259.6 190 70.0
SMO361G0579 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 1.9e-67 259.6 190 70.0
Pp3c15_15310 Physcomitrium patens HOM05D004362 ORTHO05D005650 3.2e-67 258.8 189 68.8
arahy.Tifrunner.gnm1.ann1.U4RKM8 Arachis hypogaea HOM05D004362 ORTHO05D005650 7.0e-67 257.7 170 75.3
AagrBONN_evm.TU.Sc2ySwM_228.5155 Anthoceros agrestis HOM05D004362 ORTHO05D005650 1.2e-66 256.9 189 66.7
FAN02G1421 Fragaria x ananassa HOM05D004362 ORTHO05D005650 2.7e-66 255.8 175 73.1
EL10Ac1g01881 Beta vulgaris HOM05D004362 ORTHO05D005650 3.0e-65 252.3 180 73.3
AUR62039106 Chenopodium quinoa HOM05D004362 ORTHO05D005650 1.5e-64 250.0 180 72.2
Dinv44388 Davidia involucrata HOM05D004362 ORTHO05D005650 6.2e-63 244.6 189 69.8
GSVIVG01038238001 Vitis vinifera HOM05D004362 ORTHO05D005650 1.8e-62 243.0 189 68.3
BcaC06g33449 Brassica carinata HOM05D004362 ORTHO05D005650 6.8e-62 241.1 178 71.9
MCO05G615 Micromonas commoda HOM05D004362 ORTHO05D005650 6.8e-62 241.1 188 64.4
Lalb_Chr13g0303661 Lupinus albus HOM05D004362 ORTHO05D005650 8.9e-62 240.7 189 66.7
CBR_g101 Chara braunii HOM05D004362 ORTHO05D005650 1.5e-61 240.0 190 64.2
GSVIVG01017749001 Vitis vinifera HOM05D004362 ORTHO05D005650 9.8e-61 237.3 189 67.2
Zm00001eb257450 Zea mays HOM05D004362 ORTHO05D005650 6.4e-60 234.6 188 61.2
Os07g0670600 Oryza sativa ssp. japonica HOM05D004362 ORTHO05D005650 4.6e-58 228.4 188 60.6
Cre12.g528900 Chlamydomonas reinhardtii HOM05D004362 ORTHO05D005650 2.5e-56 222.6 189 56.6
PRCOL_00000387 Prasinoderma coloniale HOM05D004362 ORTHO05D005650 4.3e-56 221.9 178 62.4
Psat0s12239g0040 Pisum sativum HOM05D004362 ORTHO05D005650 7.5e-53 211.1 182 61.0
SEGI_14868 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 3.2e-51 205.7 189 59.8
Prupe.7G009000 Prunus persica HOM05D004362 ORTHO05D005650 4.6e-50 201.8 166 67.5
Oeu027660.1 Olea europaea HOM05D004362 ORTHO05D005650 3.0e-49 199.1 115 84.3
Haze_26515 Corylus avellana HOM05D004362 ORTHO05D005650 2.6e-45 186.0 188 49.5
Psat5g016440 Pisum sativum HOM05D004362 ORTHO05D005650 1.4e-38 163.7 120 67.5
Psat7g055200 Pisum sativum HOM05D004362 ORTHO05D005650 6.9e-38 161.4 104 76.9
SEGI_29823 Sequoiadendron giganteum HOM05D004362 ORTHO05D000001 3.4e-37 159.1 124 66.9
Actinidia40262 Actinidia chinensis HOM05D004362 ORTHO05D005650 3.5e-34 149.1 85 87.1
Eucgr.C01884 Eucalyptus grandis HOM05D004362 ORTHO05D191638 8.7e-33 144.4 123 65.0
FAN05G2426 Fragaria x ananassa HOM05D004362 ORTHO05D005650 2.5e-32 142.9 174 50.0
FAN14G4293 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.6e-31 140.2 189 46.0
TPR.G35112 Trifolium pratense HOM05D004362 ORTHO05D005650 7.1e-27 124.8 78 76.9
BcaC02g09747 Brassica carinata HOM05D004362 ORTHO05D094801 2.0e-21 106.7 92 63.0
Psat4g036040 Pisum sativum HOM05D004362 ORTHO05D327968 4.9e-20 102.1 65 73.8
EL10Ac2g03799 Beta vulgaris HOM05D004362 ORTHO05D090253 1.1e-08 64.3 39 74.4
Prupe.7G008800 Prunus persica HOM05D004362 ORTHO05D334194 4.8e-07 58.9 35 77.1


User provided reference genes

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