Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.F02078 Erythranthe guttata HOM05D008047 ORTHO05D009832 3.5e-77 291.6 151 100.0
MSTRG.9235 Avicennia marina HOM05D008047 ORTHO05D009832 1.5e-40 169.9 139 58.3
Oeu034726.1 Olea europaea HOM05D008047 ORTHO05D009832 5.0e-39 164.9 136 57.4
SGA_v2.0_scaffold286G47135 Striga asiatica HOM05D008047 ORTHO05D009832 1.6e-34 149.8 111 61.3
FAN14G5573 Fragaria x ananassa HOM05D000154 ORTHO05D000092 2.8e-26 122.5 99 54.5
FAN09G4097 Fragaria x ananassa HOM05D008047 ORTHO05D009832 4.8e-26 121.7 137 43.1
FvH4_6g54420 Fragaria vesca HOM05D008047 ORTHO05D009832 8.2e-26 120.9 137 43.1
FAN09G0295 Fragaria x ananassa HOM05D008047 ORTHO05D009832 1.1e-25 120.6 137 43.1
GSVIVG01032956001 Vitis vinifera HOM05D008047 ORTHO05D009832 2.4e-25 119.4 134 47.0
Rhsim08G0038000 Rhododendron simsii HOM05D008047 ORTHO05D009832 6.9e-25 117.9 130 46.2
Atru.chr6.2719 Acer truncatum HOM05D008047 ORTHO05D009832 1.2e-24 117.1 104 52.9
Cc05_g15210 Coffea canephora HOM05D008047 ORTHO05D009832 1.5e-24 116.7 84 58.3
Prupe.3G314800 Prunus persica HOM05D008047 ORTHO05D009832 1.5e-24 116.7 107 53.3
QL02p068705 Quercus lobata HOM05D008047 ORTHO05D009832 1.5e-24 116.7 148 43.2
FAN05G0159 Fragaria x ananassa HOM05D008047 ORTHO05D009832 3.4e-24 115.5 135 42.2
SGA_v2.0_scaffold122G33226 Striga asiatica HOM05D008047 ORTHO05D009832 4.5e-24 115.2 138 50.7
Thecc.04G050500 Theobroma cacao HOM05D008047 ORTHO05D009832 4.5e-24 115.2 143 43.4
FAN02G1422 Fragaria x ananassa HOM05D008047 ORTHO05D009832 5.0e-23 111.7 100 51.0
Sc07g0003900 Simmondsia chinensis HOM05D008047 ORTHO05D009832 6.5e-23 111.3 150 42.7
Gohir.A05G333400 Gossypium hirsutum HOM05D000489 ORTHO05D009832 8.5e-23 110.9 141 46.1
Cpa.g.sc70.44 Carica papaya HOM05D008047 ORTHO05D009832 1.1e-22 110.5 115 43.5
Glyma.16G148900 Glycine max HOM05D008047 ORTHO05D009832 1.1e-22 110.5 133 45.1
Gohir.D04G073100 Gossypium hirsutum HOM05D008047 ORTHO05D009832 1.4e-22 110.2 140 45.7
Gorai.012G082400 Gossypium raimondii HOM05D008047 ORTHO05D009832 1.4e-22 110.2 140 45.7
Eucgr.I01575 Eucalyptus grandis HOM05D008047 ORTHO05D009832 1.9e-22 109.8 133 44.4
Haze_14960 Corylus avellana HOM05D008047 ORTHO05D009832 3.2e-22 109.0 134 40.3
BcaC04g24244 Brassica carinata HOM05D000233 ORTHO05D009832 4.2e-22 108.6 120 47.5
Lj5g0012387 Lotus japonicus HOM05D008047 ORTHO05D009832 4.2e-22 108.6 118 44.1
MD17G1004800 Malus domestica HOM05D008047 ORTHO05D009832 5.5e-22 108.2 104 48.1
ClCG05G012510 Citrullus lanatus HOM05D008047 ORTHO05D009832 7.2e-22 107.8 96 46.9
Ciclev10018048m.g Citrus clementina HOM05D008047 ORTHO05D009832 7.2e-22 107.8 143 41.3
Phvul.004G068800 Phaseolus vulgaris HOM05D008047 ORTHO05D009832 7.2e-22 107.8 143 41.3
Cfa007157 Carpinus fangiana HOM05D008047 ORTHO05D009832 9.4e-22 107.5 132 42.4
ECA232G1047 Erigeron canadensis HOM05D008047 ORTHO05D009832 9.4e-22 107.5 118 49.2
HanXRQChr09g0255591 Helianthus annuus HOM05D008047 ORTHO05D009832 1.2e-21 107.1 115 52.2
A02p02240 Brassica napus HOM05D000233 ORTHO05D009832 1.6e-21 106.7 119 47.9
Manes.04G094800 Manihot esculenta HOM05D008047 ORTHO05D009832 1.6e-21 106.7 135 41.5
SalBow3G4242 Salvia bowleyana HOM05D008047 ORTHO05D009832 1.6e-21 106.7 113 43.4
TWI32G1069 Tripterygium wilfordii HOM05D008047 ORTHO05D009832 1.6e-21 106.7 135 41.5
Lsat_1_v5_gn_4_185720 Lactuca sativa HOM05D008047 ORTHO05D009832 2.1e-21 106.3 118 47.5
DCAR_014455 Daucus carota HOM05D008047 ORTHO05D009832 2.7e-21 105.9 147 40.8
BcaNung04178 Brassica carinata HOM05D000233 ORTHO05D009832 3.6e-21 105.5 145 44.8
A10p24460 Brassica napus HOM05D000233 ORTHO05D009832 6.1e-21 104.8 141 41.8
C02p06480 Brassica napus HOM05D000233 ORTHO05D009832 6.1e-21 104.8 119 47.1
BolC2t06594H Brassica oleracea HOM05D000233 ORTHO05D009832 6.1e-21 104.8 119 47.1
BraA10t44511Z Brassica rapa HOM05D000233 ORTHO05D009832 6.1e-21 104.8 141 41.8
Sp6g30100 Schrenkiella parvula HOM05D008047 ORTHO05D009832 6.1e-21 104.8 120 46.7
THA.LOC104822430 Tarenaya hassleriana HOM05D008047 ORTHO05D009832 6.1e-21 104.8 134 42.5
Medtr4g011070 Medicago truncatula HOM05D008047 ORTHO05D009832 7.9e-21 104.4 134 41.0
RcHm_v2.0_Chr2g0176671 Rosa chinensis HOM05D008047 ORTHO05D009832 7.9e-21 104.4 101 45.5
TAR622G0472 Trochodendron aralioides HOM05D008047 ORTHO05D009832 1.4e-20 103.6 162 35.8
Psat7g255760 Pisum sativum HOM05D008047 ORTHO05D009832 1.8e-20 103.2 145 36.6
AL6G24550 Arabidopsis lyrata HOM05D008047 ORTHO05D009832 3.0e-20 102.4 143 40.6
CARHR199530 Cardamine hirsuta HOM05D008047 ORTHO05D009832 3.0e-20 102.4 119 46.2
Hund04128 Selenicereus undatus HOM05D008047 ORTHO05D009832 3.0e-20 102.4 111 43.2
Nitab4.5_0008306g0030 Nicotiana tabacum HOM05D008047 ORTHO05D009832 5.2e-20 101.7 132 45.5
Lj7P618T36 Lonicera japonica HOM05D008047 ORTHO05D009832 6.7e-20 101.3 88 54.5
Aa31LG11G15460 Aethionema arabicum HOM05D008047 ORTHO05D009832 8.8e-20 100.9 121 40.5
Thhalv10014913m.g Eutrema salsugineum HOM05D008047 ORTHO05D009832 1.5e-19 100.1 140 43.6
VMungo0464G1119 Vigna mungo HOM05D008047 ORTHO05D009832 1.5e-19 100.1 96 43.8
Potri.013G131500 Populus trichocarpa HOM05D008047 ORTHO05D009832 3.3e-19 99.0 146 39.0
MELO3C014762.2 Cucumis melo HOM05D000489 ORTHO05D009832 4.4e-19 98.6 111 41.4
CAN.G855.49 Capsicum annuum HOM05D008047 ORTHO05D009832 5.7e-19 98.2 126 42.1
PGR142G2733 Punica granatum HOM05D008047 ORTHO05D009832 5.7e-19 98.2 134 44.8
PGSC0003DMG400020710 Solanum tuberosum HOM05D008047 ORTHO05D009832 9.7e-19 97.4 92 48.9
BcaC04g19068 Brassica carinata HOM05D000233 ORTHO05D009832 1.7e-18 96.7 115 47.0
TPR.G7287 Trifolium pratense HOM05D008047 ORTHO05D009832 1.7e-18 96.7 150 37.3
Ah.02g128750 Amaranthus hybridus HOM05D000154 ORTHO05D000092 2.2e-18 96.3 127 39.4
AT5G13900 Arabidopsis thaliana HOM05D008047 ORTHO05D009832 2.2e-18 96.3 120 43.3
CsaV3_3G020010 Cucumis sativus L. HOM05D000489 ORTHO05D009832 2.8e-18 95.9 111 40.5
EL10Ac6g13897 Beta vulgaris HOM05D001858 ORTHO05D009832 3.7e-18 95.5 139 35.3
Nitab4.5_0003120g0010 Nicotiana tabacum HOM05D008047 ORTHO05D009832 8.2e-18 94.4 148 37.8
Solyc01g103060.4 Solanum lycopersicum HOM05D008047 ORTHO05D009832 8.2e-18 94.4 134 39.6
Nn3g16226 Nelumbo nucifera HOM05D008047 ORTHO05D009832 1.8e-17 93.2 121 43.0
AUR62017473 Chenopodium quinoa HOM05D001858 ORTHO05D009832 4.1e-17 92.0 117 40.2
Peaxi162Scf00011g01846 Petunia axillaris HOM05D008047 ORTHO05D009832 4.1e-17 92.0 88 50.0
Sabra13G0111000 Salix brachista HOM05D008047 ORTHO05D009832 1.6e-16 90.1 130 35.4
CANSAT64G2909 Cannabis sativa HOM05D008047 ORTHO05D009832 1.3e-15 87.0 118 41.5
Nitab4.5_0004668g0080 Nicotiana tabacum HOM05D008047 ORTHO05D009832 2.2e-15 86.3 90 52.2
Nn3g16225 Nelumbo nucifera HOM05D008047 ORTHO05D009832 1.0e-12 77.4 103 37.9
PGR142G1223 Punica granatum HOM05D008047 ORTHO05D009832 1.8e-12 76.6 139 38.8
AUR62042859 Chenopodium quinoa HOM05D008047 ORTHO05D009832 2.3e-12 76.3 107 39.3
MBI04_g15075_MAGBIO Magnolia biondii HOM05D000489 ORTHO05D009832 4.0e-12 75.5 105 37.1
MBI04_g47855_MAGBIO Magnolia biondii HOM05D000489 ORTHO05D009832 4.0e-12 75.5 105 37.1
CSS0048801 Camellia sinensis var. sinensis HOM05D008047 ORTHO05D009832 1.5e-11 73.6 66 53.0
PSO478G1745 Papaver somniferum HOM05D008047 ORTHO05D009832 3.7e-10 68.9 56 53.6
PSO017G1597 Papaver somniferum HOM05D008047 ORTHO05D009832 8.2e-10 67.8 56 51.8
C09p63200 Brassica napus HOM05D008047 ORTHO05D009832 4.1e-09 65.5 52 55.8
Carub.0006s1209 Capsella rubella HOM05D008047 ORTHO05D009832 1.2e-08 63.9 140 32.1
FAN24G1682 Fragaria x ananassa HOM05D000489 ORTHO05D000372 1.6e-08 63.5 114 31.6
RcHm_v2.0_Chr6g0290491 Rosa chinensis HOM05D000489 ORTHO05D000372 1.6e-08 63.5 114 32.5
Sopen01g045480 Solanum pennellii HOM05D008164 ORTHO05D010222 2.7e-08 62.8 81 43.2
FAN20G0305 Fragaria x ananassa HOM05D000489 ORTHO05D000372 3.5e-08 62.4 114 33.3
Nitab4.5_0000460g0010 Nicotiana tabacum HOM05D008047 ORTHO05D009832 3.5e-08 62.4 63 46.0
Manes.15G030500 Manihot esculenta HOM05D000489 ORTHO05D000372 4.5e-08 62.0 130 30.0
FAN15G3173 Fragaria x ananassa HOM05D000489 ORTHO05D000372 5.9e-08 61.6 114 32.5
Atru.chr4.2436 Acer truncatum HOM05D000489 ORTHO05D000372 7.7e-08 61.2 158 31.6
Atru.ctg752_3.51 Acer truncatum HOM05D000489 ORTHO05D000372 7.7e-08 61.2 158 31.6
COL.COLO4_11867 Corchorus olitorius HOM05D000489 ORTHO05D000372 7.7e-08 61.2 121 30.6
TWI18G0704 Tripterygium wilfordii HOM05D000489 ORTHO05D000372 7.7e-08 61.2 115 33.0
DCAR_002376 Daucus carota HOM05D000489 ORTHO05D000372 1.0e-07 60.8 163 29.4
DCAR_030662 Daucus carota HOM05D000489 ORTHO05D000372 1.0e-07 60.8 160 30.0
FAN13G1983 Fragaria x ananassa HOM05D001858 ORTHO05D001838 1.0e-07 60.8 88 35.2
CiPaw.02G099000 Carya illinoinensis HOM05D000489 ORTHO05D000372 1.3e-07 60.5 122 28.7
Haze_00869 Corylus avellana HOM05D000489 ORTHO05D000372 1.3e-07 60.5 123 30.9
FvH4_5g00460 Fragaria vesca HOM05D001858 ORTHO05D001838 1.3e-07 60.5 88 35.2
FAN27G0343 Fragaria x ananassa HOM05D000489 ORTHO05D000372 1.3e-07 60.5 127 30.7
Medtr1g071730 Medicago truncatula HOM05D000489 ORTHO05D000372 1.3e-07 60.5 137 27.7
FvH4_2g23211 Fragaria vesca HOM05D000489 ORTHO05D000372 1.7e-07 60.1 127 29.9
FAN18G0727 Fragaria x ananassa HOM05D001858 ORTHO05D001838 1.7e-07 60.1 88 35.2
Lj5g0025398 Lotus japonicus HOM05D000489 ORTHO05D000372 1.7e-07 60.1 126 28.6
FvH4_4g16110 Fragaria vesca HOM05D000489 ORTHO05D000372 2.2e-07 59.7 160 30.0
FAN12G1589 Fragaria x ananassa HOM05D000489 ORTHO05D000372 2.2e-07 59.7 160 30.0
Rhsim02G0026700 Rhododendron simsii HOM05D000489 ORTHO05D000372 2.2e-07 59.7 140 31.4
COL.COLO4_13397 Corchorus olitorius HOM05D008047 ORTHO05D009832 2.9e-07 59.3 72 48.6
Ciclev10006599m.g Citrus clementina HOM05D000489 ORTHO05D000372 3.8e-07 58.9 149 30.9
FAN20G1637 Fragaria x ananassa HOM05D000489 ORTHO05D000372 3.8e-07 58.9 119 30.3
FAN27G2841 Fragaria x ananassa HOM05D000489 ORTHO05D000372 3.8e-07 58.9 119 30.3
Lj5g0016314 Lotus japonicus HOM05D000489 ORTHO05D000372 3.8e-07 58.9 99 30.3
Rhsim13G0026800 Rhododendron simsii HOM05D000489 ORTHO05D000372 3.8e-07 58.9 118 33.9
HPP92_006122 Vanilla planifolia HOM05D000489 ORTHO05D000372 3.8e-07 58.9 105 40.0
DCAR_024172 Daucus carota HOM05D000489 ORTHO05D000372 5.0e-07 58.5 140 31.4
FAN17G1366 Fragaria x ananassa HOM05D000489 ORTHO05D000372 5.0e-07 58.5 160 30.0
AUR62032324 Chenopodium quinoa HOM05D000489 ORTHO05D000372 6.5e-07 58.2 122 32.8
MELO3C012661.2 Cucumis melo HOM05D000489 ORTHO05D000372 6.5e-07 58.2 123 34.1
Dinv14010 Davidia involucrata HOM05D000489 ORTHO05D000372 6.5e-07 58.2 134 28.4
GSVIVG01018008001 Vitis vinifera HOM05D000489 ORTHO05D000372 6.5e-07 58.2 109 31.2
FAN22G0316 Fragaria x ananassa HOM05D000489 ORTHO05D000372 8.5e-07 57.8 147 32.0
QL06p001777 Quercus lobata HOM05D000489 ORTHO05D000372 8.5e-07 57.8 128 29.7
THA.LOC104808556 Tarenaya hassleriana HOM05D000489 ORTHO05D000372 8.5e-07 57.8 107 32.7
CANSAT25G3026 Cannabis sativa HOM05D000489 ORTHO05D000372 1.1e-06 57.4 94 34.0
Ca_09742_v3 Cicer arietinum L. HOM05D000489 ORTHO05D000372 1.1e-06 57.4 114 31.6
FAN07G1345 Fragaria x ananassa HOM05D000489 ORTHO05D000372 1.1e-06 57.4 160 29.4
Glyma.10G028100 Glycine max HOM05D000489 ORTHO05D000372 1.1e-06 57.4 122 27.9
Potri.008G155100 Populus trichocarpa HOM05D000489 ORTHO05D000372 1.1e-06 57.4 103 30.1
Sabra10G0058100 Salix brachista HOM05D000489 ORTHO05D000372 1.1e-06 57.4 98 31.6
Actinidia23526 Actinidia chinensis HOM05D000489 ORTHO05D000372 1.5e-06 57.0 121 28.9
Aqoxy2G03422 Aquilegia oxysepala HOM05D000489 ORTHO05D000372 1.5e-06 57.0 119 31.1
MBI05_g20779_MAGBIO Magnolia biondii HOM05D000489 ORTHO05D000372 1.5e-06 57.0 147 29.3
MD16G1196700 Malus domestica HOM05D000489 ORTHO05D000372 1.5e-06 57.0 136 27.9
Sabra08G0118200 Salix brachista HOM05D000489 ORTHO05D000372 1.5e-06 57.0 103 31.1
Sc17g0001290 Simmondsia chinensis HOM05D000489 ORTHO05D000372 1.5e-06 57.0 127 29.1
COL.COLO4_09062 Corchorus olitorius HOM05D000489 ORTHO05D000372 1.9e-06 56.6 108 31.5
Dinv32909 Davidia involucrata HOM05D000489 ORTHO05D000372 1.9e-06 56.6 107 32.7
FvH4_2g23220 Fragaria vesca HOM05D000489 ORTHO05D000372 1.9e-06 56.6 119 29.4
Manes.03G176600 Manihot esculenta HOM05D000489 ORTHO05D000372 1.9e-06 56.6 104 31.7
Peaxi162Scf00402g00511 Petunia axillaris HOM05D000489 ORTHO05D000372 1.9e-06 56.6 133 31.6
Prupe.8G237900 Prunus persica HOM05D000489 ORTHO05D000372 1.9e-06 56.6 123 30.1
RcHm_v2.0_Chr6g0290511 Rosa chinensis HOM05D000489 ORTHO05D000372 1.9e-06 56.6 97 30.9
GSVIVG01001177001 Vitis vinifera HOM05D000489 ORTHO05D000372 1.9e-06 56.6 157 29.9
CiPaw.01G168500 Carya illinoinensis HOM05D000489 ORTHO05D000372 2.5e-06 56.2 122 27.0
Ciclev10021499m.g Citrus clementina HOM05D000489 ORTHO05D000372 2.5e-06 56.2 131 29.8
Gohir.D11G129700 Gossypium hirsutum HOM05D000489 ORTHO05D000372 2.5e-06 56.2 111 35.1
Actinidia08483 Actinidia chinensis HOM05D000489 ORTHO05D000372 3.2e-06 55.8 129 31.8
arahy.Tifrunner.gnm1.ann1.2B1HMX Arachis hypogaea HOM05D000489 ORTHO05D000372 3.2e-06 55.8 121 29.8
AUR62028597 Chenopodium quinoa HOM05D003852 ORTHO05D003095 3.2e-06 55.8 129 30.2
FAN08G1163 Fragaria x ananassa HOM05D001858 ORTHO05D001838 3.2e-06 55.8 136 29.4
Hund09506 Selenicereus undatus HOM05D000489 ORTHO05D000372 3.2e-06 55.8 157 28.0
TWI53G0660 Tripterygium wilfordii HOM05D000489 ORTHO05D000372 3.2e-06 55.8 139 28.1
CSS0028459 Camellia sinensis var. sinensis HOM05D000489 ORTHO05D000372 4.2e-06 55.5 132 30.3
CiPaw.02G099100 Carya illinoinensis HOM05D000489 ORTHO05D000372 4.2e-06 55.5 97 33.0
Eucgr.H03442 Eucalyptus grandis HOM05D000489 ORTHO05D000372 4.2e-06 55.5 118 30.5
Glyma.11G008000 Glycine max HOM05D000489 ORTHO05D000372 4.2e-06 55.5 123 28.5
QL12p020991 Quercus lobata HOM05D000489 ORTHO05D000372 4.2e-06 55.5 106 33.0
Thecc.01G275000 Theobroma cacao HOM05D000489 ORTHO05D000372 5.5e-06 55.1 103 30.1
vmacro15354 Vaccinium macrocarpon HOM05D000489 ORTHO05D000372 5.5e-06 55.1 140 29.3
DCAR_018434 Daucus carota HOM05D000489 ORTHO05D000372 7.2e-06 54.7 125 32.8
Gohir.A09G217000 Gossypium hirsutum HOM05D000489 ORTHO05D000372 7.2e-06 54.7 102 30.4
Hma1.2p1_1868F.1_g305930 Hydrangea macrophylla HOM05D001858 ORTHO05D001838 7.2e-06 54.7 88 31.8
Manes.05G079400 Manihot esculenta HOM05D000489 ORTHO05D000372 7.2e-06 54.7 102 34.3
Potri.002G050500 Populus trichocarpa HOM05D000489 ORTHO05D000372 7.2e-06 54.7 98 35.7
Potri.010G085400 Populus trichocarpa HOM05D000489 ORTHO05D000372 7.2e-06 54.7 103 30.1
SalBow1G4970 Salvia bowleyana HOM05D001858 ORTHO05D001838 7.2e-06 54.7 88 34.1
Sc13g0004530 Simmondsia chinensis HOM05D000489 ORTHO05D000372 7.2e-06 54.7 90 34.4
Sc13g0006080 Simmondsia chinensis HOM05D000489 ORTHO05D000372 7.2e-06 54.7 90 34.4
Thecc.04G234700 Theobroma cacao HOM05D000489 ORTHO05D000372 7.2e-06 54.7 117 30.8
Duzib052G0439 Durio zibethinus HOM05D000489 ORTHO05D000372 9.4e-06 54.3 116 31.0
Glyma.20G146800 Glycine max HOM05D000489 ORTHO05D000372 9.4e-06 54.3 148 31.1


User provided reference genes

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