Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.F01706 Erythranthe guttata HOM05D004585 ORTHO05D005640 2.4e-119 432.2 217 100.0
SGA_v2.0_scaffold113G31721 Striga asiatica HOM05D004585 ORTHO05D005640 4.7e-91 338.2 217 77.4
MSTRG.412 Avicennia marina HOM05D004585 ORTHO05D005640 2.4e-87 325.9 211 75.4
SGA_v2.0_scaffold10G05319 Striga asiatica HOM05D004585 ORTHO05D005640 2.7e-86 322.4 217 74.7
SGA_v2.0_scaffold154G37190 Striga asiatica HOM05D004585 ORTHO05D005640 1.1e-84 317.0 216 71.8
Actinidia18578 Actinidia chinensis HOM05D004585 ORTHO05D005640 8.0e-83 310.8 218 68.8
vmacro21510 Vaccinium macrocarpon HOM05D004585 ORTHO05D005640 3.1e-82 308.9 218 69.3
Oeu027977.1 Olea europaea HOM05D004585 ORTHO05D005640 6.8e-82 307.8 217 70.0
SalBow6G2458 Salvia bowleyana HOM05D004585 ORTHO05D005640 1.2e-81 307.0 251 65.7
Sopen06g031130 Solanum pennellii HOM05D004585 ORTHO05D005640 3.4e-81 305.4 220 69.5
PGSC0003DMG400000462 Solanum tuberosum HOM05D004585 ORTHO05D005640 5.8e-81 304.7 219 68.5
Cc02_g10240 Coffea canephora HOM05D004585 ORTHO05D005640 1.7e-80 303.1 222 68.0
CSS0035600 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D000484 2.9e-80 302.4 216 68.1
PGSC0003DMG400007128 Solanum tuberosum HOM05D004585 ORTHO05D005640 4.9e-80 301.6 220 69.1
Hma1.2p1_0567F.1_g180100 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 6.4e-80 301.2 218 69.3
Peaxi162Scf00150g00411 Petunia axillaris HOM05D004585 ORTHO05D005640 6.4e-80 301.2 216 68.1
Nitab4.5_0000442g0080 Nicotiana tabacum HOM05D004585 ORTHO05D005640 8.3e-80 300.8 215 68.4
Sopen11g026360 Solanum pennellii HOM05D004585 ORTHO05D005640 8.3e-80 300.8 219 68.5
Actinidia06707 Actinidia chinensis HOM05D004585 ORTHO05D005640 3.2e-79 298.9 218 67.0
Dinv20840 Davidia involucrata HOM05D004585 ORTHO05D005640 7.0e-79 297.7 217 68.2
Rhsim03G0106100 Rhododendron simsii HOM05D004585 ORTHO05D005640 7.0e-79 297.7 219 66.7
HanXRQChr14g0456901 Helianthus annuus HOM05D004585 ORTHO05D005640 7.8e-78 294.3 207 69.1
HanXRQChr10g0319081 Helianthus annuus HOM05D004585 ORTHO05D005640 1.3e-77 293.5 210 68.1
Lsat_1_v5_gn_2_86220 Lactuca sativa HOM05D004585 ORTHO05D005640 2.3e-77 292.7 218 65.1
Cfa011225 Carpinus fangiana HOM05D004585 ORTHO05D005640 6.6e-77 291.2 218 67.9
TAR633G1318 Trochodendron aralioides HOM05D004585 ORTHO05D005640 8.6e-77 290.8 219 64.4
Gorai.013G013300 Gossypium raimondii HOM05D004585 ORTHO05D005640 1.1e-76 290.4 218 66.1
Gohir.D13G012100 Gossypium hirsutum HOM05D004585 ORTHO05D005640 3.3e-76 288.9 218 66.1
Haze_02611 Corylus avellana HOM05D004585 ORTHO05D005640 4.3e-76 288.5 218 67.4
Thecc.10G109700 Theobroma cacao HOM05D004585 ORTHO05D005640 4.3e-76 288.5 218 66.5
Thecc.K0008500 Theobroma cacao HOM05D004585 ORTHO05D005640 4.3e-76 288.5 218 66.5
GSVIVG01021851001 Vitis vinifera HOM05D004585 ORTHO05D005640 7.3e-76 287.7 218 67.4
Hma1.2p1_0026F.1_g016750 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 9.5e-76 287.3 218 67.4
Gohir.A13G011400 Gossypium hirsutum HOM05D004585 ORTHO05D005640 1.2e-75 287.0 218 65.1
THA.LOC104816458 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 3.6e-75 285.4 222 65.3
ECA238G4124 Erigeron canadensis HOM05D004585 ORTHO05D005640 1.1e-74 283.9 217 64.1
Lj3A931T47 Lonicera japonica HOM05D004585 ORTHO05D005640 1.1e-74 283.9 204 70.1
Phvul.005G089300 Phaseolus vulgaris HOM05D004585 ORTHO05D005640 1.1e-74 283.9 216 63.9
Sc09g0005570 Simmondsia chinensis HOM05D004585 ORTHO05D005640 1.1e-74 283.9 208 66.3
PGR142G4346 Punica granatum HOM05D004585 ORTHO05D005640 1.4e-74 283.5 219 63.9
Cfa013557 Carpinus fangiana HOM05D004585 ORTHO05D005640 2.3e-74 282.7 218 65.1
Duzib128G1105 Durio zibethinus HOM05D004585 ORTHO05D005640 2.3e-74 282.7 223 64.1
Solyc06g074720.4 Solanum lycopersicum HOM05D004585 ORTHO05D005640 3.1e-74 282.3 207 69.1
TAR633G2635 Trochodendron aralioides HOM05D004585 ORTHO05D005640 4.0e-74 282.0 219 62.1
CiPaw.01G204400 Carya illinoinensis HOM05D004585 ORTHO05D005640 5.2e-74 281.6 217 65.4
arahy.Tifrunner.gnm1.ann1.48LUDE Arachis hypogaea HOM05D004585 ORTHO05D005640 6.8e-74 281.2 220 63.6
Prupe.1G580700 Prunus persica HOM05D004585 ORTHO05D005640 8.9e-74 280.8 223 65.0
arahy.Tifrunner.gnm1.ann1.CB8VHN Arachis hypogaea HOM05D004585 ORTHO05D005640 1.5e-73 280.0 220 63.6
Eucgr.G02711 Eucalyptus grandis HOM05D004585 ORTHO05D005640 7.5e-73 277.7 220 62.3
Nn3g20167 Nelumbo nucifera HOM05D004585 ORTHO05D005640 9.8e-73 277.3 220 62.7
Ca_04982_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 2.9e-72 275.8 216 63.9
Ca_11096_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 2.9e-72 275.8 216 63.9
THA.LOC104823192 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 3.7e-72 275.4 223 64.6
Glyma.09G111400 Glycine max HOM05D004585 ORTHO05D005640 6.4e-72 274.6 220 63.6
PSO675G5749 Papaver somniferum HOM05D004585 ORTHO05D005640 6.4e-72 274.6 227 62.1
PSO717G0039 Papaver somniferum HOM05D004585 ORTHO05D005640 8.3e-72 274.2 229 62.0
Psat6g221600 Pisum sativum HOM05D004585 ORTHO05D005640 1.1e-71 273.9 216 63.0
Thhalv10014607m.g Eutrema salsugineum HOM05D004585 ORTHO05D005640 2.4e-71 272.7 224 61.6
Nitab4.5_0003470g0110 Nicotiana tabacum HOM05D004585 ORTHO05D005640 2.4e-71 272.7 212 65.1
BcaC06g32168 Brassica carinata HOM05D004585 ORTHO05D005640 9.2e-71 270.8 225 60.0
Sed0007729 Sechium edule HOM05D004585 ORTHO05D005640 1.2e-70 270.4 216 62.0
A10p31500 Brassica napus HOM05D004585 ORTHO05D005640 1.6e-70 270.0 225 60.0
C09p72190 Brassica napus HOM05D004585 ORTHO05D005640 1.6e-70 270.0 225 60.0
BolC9t59963H Brassica oleracea HOM05D004585 ORTHO05D005640 1.6e-70 270.0 225 60.0
BraA10t45196Z Brassica rapa HOM05D004585 ORTHO05D005640 1.6e-70 270.0 225 60.0
Aa31LG3G3420 Aethionema arabicum HOM05D004585 ORTHO05D005640 2.1e-70 269.6 222 63.5
Manes.05G202500 Manihot esculenta HOM05D004585 ORTHO05D005640 2.1e-70 269.6 216 61.1
Medtr1g108290 Medicago truncatula HOM05D004585 ORTHO05D005640 3.5e-70 268.9 217 61.8
PSO173G0033 Papaver somniferum HOM05D004585 ORTHO05D005640 4.6e-70 268.5 229 61.1
TPR.G4853 Trifolium pratense HOM05D004585 ORTHO05D005640 4.6e-70 268.5 216 62.5
Lalb_Chr14g0365991 Lupinus albus HOM05D004585 ORTHO05D005640 6.0e-70 268.1 217 62.2
Dinv30656 Davidia involucrata HOM05D004585 ORTHO05D005640 7.8e-70 267.7 218 62.8
Sed0016970 Sechium edule HOM05D004585 ORTHO05D005640 1.0e-69 267.3 216 62.5
VMungo1080G1669 Vigna mungo HOM05D004585 ORTHO05D005640 1.0e-69 267.3 216 60.2
CARHR208690 Cardamine hirsuta HOM05D004585 ORTHO05D005640 1.3e-69 266.9 224 59.8
ClCG08G008100 Citrullus lanatus HOM05D004585 ORTHO05D005640 1.7e-69 266.5 216 61.6
Lalb_Chr22g0354511 Lupinus albus HOM05D004585 ORTHO05D005640 1.7e-69 266.5 217 61.8
Sp6g38180 Schrenkiella parvula HOM05D004585 ORTHO05D005640 1.7e-69 266.5 224 61.2
TWI38G0710 Tripterygium wilfordii HOM05D004585 ORTHO05D005640 1.7e-69 266.5 217 60.4
RcHm_v2.0_Chr4g0433501 Rosa chinensis HOM05D004585 ORTHO05D005640 2.3e-69 266.2 217 63.6
MELO3C019883.2 Cucumis melo HOM05D004585 ORTHO05D005640 3.0e-69 265.8 216 61.6
Glyma.02G173000 Glycine max HOM05D004585 ORTHO05D005640 3.9e-69 265.4 218 62.8
Lj6g0005217 Lotus japonicus HOM05D004585 ORTHO05D005640 3.9e-69 265.4 215 60.0
Potri.010G234800 Populus trichocarpa HOM05D004585 ORTHO05D005640 3.9e-69 265.4 219 59.8
CANSAT56G4487 Cannabis sativa HOM05D004585 ORTHO05D005640 6.6e-69 264.6 217 60.4
CsaV3_6G004080 Cucumis sativus L. HOM05D004585 ORTHO05D005640 6.6e-69 264.6 216 61.6
BcaC03g12939 Brassica carinata HOM05D004585 ORTHO05D005640 8.6e-69 264.2 225 59.1
Ah.03g136890 Amaranthus hybridus HOM05D004585 ORTHO05D005640 1.9e-68 263.1 194 63.9
C02p02000 Brassica napus HOM05D004585 ORTHO05D005640 1.9e-68 263.1 225 58.7
BraA02t04819Z Brassica rapa HOM05D004585 ORTHO05D005640 1.9e-68 263.1 221 60.2
Hund06922 Selenicereus undatus HOM05D004585 ORTHO05D005640 1.9e-68 263.1 210 62.9
Hund13887 Selenicereus undatus HOM05D004585 ORTHO05D005640 2.5e-68 262.7 189 65.6
Ah.16g102420 Amaranthus hybridus HOM05D004585 ORTHO05D005640 7.3e-68 261.2 195 64.6
Carub.0006s0352 Capsella rubella HOM05D004585 ORTHO05D005640 1.2e-67 260.4 222 59.0
Sabra10G0182000 Salix brachista HOM05D004585 ORTHO05D005640 1.2e-67 260.4 219 58.9
MD08G1243300 Malus domestica HOM05D004585 ORTHO05D005640 1.6e-67 260.0 225 58.7
Atru.chr12.969 Acer truncatum HOM05D004585 ORTHO05D005640 2.1e-67 259.6 218 60.6
QL04p041242 Quercus lobata HOM05D004585 ORTHO05D005640 8.1e-67 257.7 219 59.4
Haze_22178 Corylus avellana HOM05D004585 ORTHO05D005640 3.1e-66 255.8 218 61.0
EL10Ac2g03709 Beta vulgaris HOM05D004585 ORTHO05D005640 4.0e-66 255.4 191 62.3
Cpa.g.sc128.48 Carica papaya HOM05D004585 ORTHO05D005640 5.2e-66 255.0 203 62.1
CDE04G0123 Ceratophyllum demersum HOM05D004585 ORTHO05D005640 5.2e-66 255.0 218 58.7
Ciclev10013752m.g Citrus clementina HOM05D004585 ORTHO05D005640 6.8e-66 254.6 218 60.1
AL6G14230 Arabidopsis lyrata HOM05D004585 ORTHO05D005640 1.7e-64 250.0 223 58.7
FvH4_5g27351 Fragaria vesca HOM05D004585 ORTHO05D005640 1.7e-64 250.0 226 57.5
CSS0012030 Camellia sinensis var. sinensis HOM05D004585 ORTHO05D005640 3.8e-64 248.8 223 58.7
CDE02G2408 Ceratophyllum demersum HOM05D000251 ORTHO05D002506 3.8e-64 248.8 218 57.8
AUR62003699 Chenopodium quinoa HOM05D004585 ORTHO05D005640 6.4e-64 248.1 190 61.6
FAN26G1691 Fragaria x ananassa HOM05D004585 ORTHO05D005640 6.4e-64 248.1 226 58.0
PSO210G0756 Papaver somniferum HOM05D004585 ORTHO05D005640 1.4e-63 246.9 207 60.9
AT5G04600 Arabidopsis thaliana HOM05D004585 ORTHO05D005640 7.1e-63 244.6 223 56.5
COL.COLO4_33895 Corchorus olitorius HOM05D004585 ORTHO05D005640 7.1e-63 244.6 193 64.2
EL10Ac4g08678 Beta vulgaris HOM05D004585 ORTHO05D005640 4.6e-62 241.9 179 62.6
EL10Ac4g08675 Beta vulgaris HOM05D004585 ORTHO05D005640 7.8e-62 241.1 182 62.1
ATR0068G115 Amborella trichopoda HOM05D004585 ORTHO05D005640 2.3e-61 239.6 217 53.5
Os08g0412200 Oryza sativa ssp. japonica HOM05D004585 ORTHO05D005640 2.5e-60 236.1 219 55.3
HPP92_008213 Vanilla planifolia HOM05D004585 ORTHO05D005640 5.6e-60 235.0 218 56.4
Atru.chr10.1244 Acer truncatum HOM05D004585 ORTHO05D005640 9.6e-60 234.2 186 63.4
FAN13G1680 Fragaria x ananassa HOM05D005925 ORTHO05D007270 2.1e-59 233.0 259 50.2
FAN18G1621 Fragaria x ananassa HOM05D005925 ORTHO05D007270 2.1e-59 233.0 259 50.2
DCAR_012470 Daucus carota HOM05D004585 ORTHO05D005640 5.1e-53 211.8 148 69.6
Medtr4g127330 Medicago truncatula HOM05D004585 ORTHO05D005640 9.6e-52 207.6 185 59.5
COL.COLO4_27310 Corchorus olitorius HOM05D004585 ORTHO05D005640 2.8e-51 206.1 148 66.9
Zm00001eb178930 Zea mays HOM05D004585 ORTHO05D005640 1.1e-50 204.1 200 55.0
Ciclev10033004m.g Citrus clementina HOM05D004585 ORTHO05D005640 2.2e-48 196.4 149 63.8
Lj9A82T44 Lonicera japonica HOM05D004585 ORTHO05D005640 8.4e-48 194.5 150 66.7
Pp3c8_3240 Physcomitrium patens HOM05D004585 ORTHO05D005640 3.0e-45 186.0 216 44.0
Pp3c3_32540 Physcomitrium patens HOM05D004585 ORTHO05D005640 2.5e-44 183.0 200 44.5
Oeu046197.1 Olea europaea HOM05D004585 ORTHO05D005640 9.6e-44 181.0 147 59.9
Mapoly0059s0023 Marchantia polymorpha HOM05D004585 ORTHO05D005640 1.6e-43 180.3 179 48.6
BolC2t06157H Brassica oleracea HOM05D004585 ORTHO05D005640 3.6e-43 179.1 163 54.0
DCAR_001331 Daucus carota HOM05D004585 ORTHO05D005640 2.4e-42 176.4 148 61.5
TPR.G31410 Trifolium pratense HOM05D004585 ORTHO05D005640 3.1e-42 176.0 137 64.2
AagrBONN_evm.TU.Sc2ySwM_228.827 Anthoceros agrestis HOM05D004585 ORTHO05D005640 3.0e-37 159.5 146 52.7
AUR62018007 Chenopodium quinoa HOM05D004585 ORTHO05D005640 6.7e-37 158.3 129 58.9
Lj6g0027575 Lotus japonicus HOM05D004585 ORTHO05D005640 4.3e-36 155.6 122 61.5
SMO117G0347 Selaginella moellendorffii HOM05D004585 ORTHO05D005640 3.7e-35 152.5 196 40.8
Cre08.g368500 Chlamydomonas reinhardtii HOM05D004585 ORTHO05D005640 6.9e-34 148.3 175 41.1
unitig_26.g9455 Utricularia gibba HOM05D004585 ORTHO05D005640 6.9e-34 148.3 221 44.3
MCO05G308 Micromonas commoda HOM05D004585 ORTHO05D005640 2.9e-32 142.9 153 43.1
Aqoxy1G00240 Aquilegia oxysepala HOM05D004585 ORTHO05D005640 8.4e-32 141.4 113 61.1
CBR_g11154 Chara braunii HOM05D004585 ORTHO05D005640 1.1e-31 141.0 230 37.0
PRCOL_00003387 Prasinoderma coloniale HOM05D004585 ORTHO05D005640 1.1e-31 141.0 160 41.9
Cfa021710 Carpinus fangiana HOM05D004585 ORTHO05D005640 6.7e-29 131.7 183 39.3
Oeu060262.1 Olea europaea HOM05D004585 ORTHO05D005640 4.8e-27 125.6 89 69.7
BcaC06g32170 Brassica carinata HOM05D004585 ORTHO05D005640 5.7e-20 102.1 66 71.2
TPR.G32073 Trifolium pratense HOM05D004585 ORTHO05D005640 1.6e-19 100.5 73 65.8
Haze_26093 Corylus avellana HOM05D004585 ORTHO05D005640 1.8e-18 97.1 162 33.3
Oeu053518.1 Olea europaea HOM05D004585 ORTHO05D005640 1.1e-15 87.8 49 81.6
MD15G1436900 Malus domestica HOM05D004585 ORTHO05D005640 4.2e-15 85.9 74 56.8
COL.COLO4_14104 Corchorus olitorius HOM05D004585 ORTHO05D005736 9.4e-15 84.7 78 50.0
EL10Ac7g17659 Beta vulgaris HOM05D004585 ORTHO05D005640 4.6e-14 82.4 69 50.7
COL.COLO4_17533 Corchorus olitorius HOM05D001240 ORTHO05D002450 7.9e-14 81.6 78 48.7
MD15G1437000 Malus domestica HOM05D004585 ORTHO05D005640 8.8e-13 78.2 49 67.3
BcaB01g05909 Brassica carinata HOM05D004585 ORTHO05D005640 3.3e-12 76.3 54 64.8
SalBow3G2087 Salvia bowleyana HOM05D004585 ORTHO05D005640 4.8e-11 72.4 42 81.0
MD15G1437100 Malus domestica HOM05D004585 ORTHO05D005640 6.3e-11 72.0 76 51.3
EL10Ac2g02998 Beta vulgaris HOM05D000461 ORTHO05D005640 4.5e-09 65.9 52 53.8
vmacro07224 Vaccinium macrocarpon HOM05D004585 ORTHO05D037280 2.5e-07 60.1 44 59.1
Lj1P996T49 Lonicera japonica HOM05D003145 ORTHO05D003586 4.2e-07 59.3 91 36.3
DCAR_009360 Daucus carota HOM05D003145 ORTHO05D003586 7.2e-07 58.5 90 34.4
Glyma.09G232800 Glycine max HOM05D004585 ORTHO05D005640 7.2e-07 58.5 69 49.3
CAN.G530.9 Capsicum annuum HOM05D000115 ORTHO05D000645 9.4e-07 58.2 38 68.4
CSS0040420 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 1.2e-06 57.8 97 30.9
Lsat_1_v5_gn_8_8220 Lactuca sativa HOM05D001543 ORTHO05D001722 1.2e-06 57.8 66 40.9
CSS0022791 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 2.1e-06 57.0 97 30.9
CSS0037848 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 2.1e-06 57.0 97 30.9
CSS0043481 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 2.1e-06 57.0 97 30.9
PSO478G2622 Papaver somniferum HOM05D004585 ORTHO05D037280 2.7e-06 56.6 33 72.7
EL10Ac4g07530 Beta vulgaris HOM05D000285 ORTHO05D000241 3.6e-06 56.2 107 30.8
PSO447G0101 Papaver somniferum HOM05D004585 ORTHO05D037280 4.7e-06 55.8 33 72.7
Actinidia37137 Actinidia chinensis HOM05D000285 ORTHO05D000241 7.9e-06 55.1 79 35.4
Hma1.2p1_0099F.1_g048970 Hydrangea macrophylla HOM05D001543 ORTHO05D001722 7.9e-06 55.1 66 39.4


User provided reference genes

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