Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 0.0e+00 1085.1 544 100.0
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 6.0e-244 847.4 544 79.2
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 1.9e-226 789.3 532 75.6
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 4.8e-225 784.6 543 73.3
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 6.9e-224 780.8 492 78.3
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 8.1e-217 757.3 511 74.0
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 1.8e-216 756.1 503 74.4
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 2.4e-216 755.7 495 73.5
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 5.3e-216 754.6 475 77.7
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 5.3e-216 754.6 496 75.8
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 9.9e-215 750.4 475 78.3
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 8.4e-214 747.3 537 69.8
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 1.1e-213 746.9 519 73.8
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 1.4e-213 746.5 499 75.2
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 4.2e-213 745.0 526 71.1
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 7.1e-213 744.2 539 69.9
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 2.1e-212 742.7 547 69.7
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 2.1e-212 742.7 501 72.7
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 2.7e-212 742.3 511 73.6
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 1.8e-211 739.6 530 69.4
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 3.9e-211 738.4 529 70.1
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 8.7e-211 737.3 533 70.0
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 1.9e-210 736.1 525 70.9
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 1.3e-209 733.4 516 70.5
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 1.3e-209 733.4 513 70.8
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 8.2e-209 730.7 538 69.0
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 1.4e-208 729.9 492 73.6
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 1.8e-208 729.6 493 72.6
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 2.4e-208 729.2 552 66.7
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 4.0e-208 728.4 492 72.4
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 3.4e-207 725.3 478 75.1
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 1.4e-205 719.9 475 74.5
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 4.2e-205 718.4 496 73.8
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 4.2e-205 718.4 489 71.2
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 9.3e-205 717.2 475 73.5
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 9.3e-205 717.2 474 73.4
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 9.3e-205 717.2 525 69.1
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 2.7e-204 715.7 513 70.0
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 2.7e-204 715.7 489 72.2
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 3.5e-204 715.3 490 71.8
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 3.5e-204 715.3 528 68.2
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 1.3e-203 713.4 551 66.8
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 1.5e-202 709.9 502 70.9
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 7.4e-202 707.6 518 68.9
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 1.6e-201 706.4 494 70.6
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 2.8e-201 705.7 519 68.2
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 3.7e-201 705.3 475 72.6
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 3.7e-201 705.3 475 72.6
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 1.1e-200 703.7 479 72.2
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 1.4e-200 703.4 489 71.4
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 5.3e-200 701.4 489 70.3
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 9.0e-200 700.7 475 72.2
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 1.2e-199 700.3 475 72.2
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 1.2e-199 700.3 507 68.8
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 1.5e-199 699.9 474 73.0
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 2.6e-199 699.1 491 69.5
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 3.4e-199 698.7 489 69.5
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 5.9e-199 698.0 552 65.6
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 5.0e-198 694.9 501 69.9
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 8.5e-198 694.1 527 66.6
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 2.5e-197 692.6 547 65.8
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 5.5e-197 691.4 474 72.2
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 7.2e-197 691.0 500 68.2
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 7.2e-197 691.0 492 68.7
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 9.4e-197 690.6 473 70.4
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 9.4e-197 690.6 527 67.0
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 9.4e-197 690.6 469 71.9
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 1.2e-196 690.3 489 68.9
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 1.2e-196 690.3 494 68.8
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 2.1e-196 689.5 530 66.8
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 2.1e-196 689.5 472 69.3
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 3.6e-196 688.7 475 69.9
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 6.1e-196 688.0 506 67.0
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 7.9e-196 687.6 490 70.4
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 7.9e-196 687.6 528 65.7
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 1.0e-195 687.2 548 65.0
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 1.0e-195 687.2 457 74.4
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 1.8e-195 686.4 474 72.4
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 4.3e-194 681.8 591 61.6
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 7.4e-194 681.0 467 71.3
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 4.1e-192 675.2 517 66.9
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 4.1e-192 675.2 496 69.4
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 4.1e-192 675.2 469 71.0
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 2.0e-191 672.9 487 68.6
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 5.9e-191 671.4 495 68.5
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 7.7e-191 671.0 481 67.2
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 1.3e-190 670.2 486 69.1
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 2.2e-190 669.5 457 72.4
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 2.9e-190 669.1 521 66.4
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 3.8e-190 668.7 516 65.9
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 1.1e-189 667.2 522 63.6
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 1.4e-189 666.8 525 63.6
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 5.5e-189 664.8 489 67.5
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 2.1e-188 662.9 489 67.3
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 2.1e-188 662.9 482 66.4
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 2.7e-188 662.5 469 67.8
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 5.1e-187 658.3 529 63.9
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 2.2e-185 652.9 499 65.9
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 5.3e-184 648.3 569 58.5
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 3.5e-183 645.6 461 69.2
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 5.9e-183 644.8 467 69.0
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 5.9e-183 644.8 467 69.0
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.7e-182 643.3 458 68.6
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 2.2e-182 642.9 530 60.6
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 2.9e-182 642.5 520 64.4
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 5.0e-182 641.7 467 68.7
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 1.9e-181 639.8 491 68.4
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 6.7e-179 631.3 634 54.6
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 1.8e-176 623.2 474 65.4
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 2.4e-176 622.9 511 61.4
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 7.7e-175 617.8 538 62.1
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 6.1e-172 608.2 585 57.9
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.4e-171 607.1 467 65.7
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 3.0e-171 605.9 463 64.1
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 9.1e-168 594.3 539 59.7
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 6.8e-163 578.2 366 77.0
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 9.5e-157 557.8 363 75.5
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 6.1e-156 555.1 497 58.6
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 1.7e-150 537.0 500 58.8
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 8.6e-150 534.6 362 75.4
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 3.6e-148 529.3 390 66.7
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 4.4e-146 522.3 457 56.5
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 7.8e-143 511.5 466 54.7
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 1.0e-142 511.1 361 71.2
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 3.1e-139 499.6 459 55.6
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 4.4e-130 469.2 381 64.6
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 1.4e-128 464.2 341 67.4
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 3.3e-125 453.0 332 68.1
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 7.3e-125 451.8 474 51.5
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.4e-123 447.6 287 74.2
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 1.7e-110 404.1 298 69.1
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 2.3e-110 403.7 479 48.0
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 1.1e-107 394.8 243 78.2
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 1.2e-106 391.3 488 45.9
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 7.6e-106 388.7 340 59.4
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 4.9e-105 386.0 313 61.3
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 1.8e-94 350.9 215 77.2
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 1.3e-92 344.7 300 61.7
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 1.3e-92 344.7 219 75.8
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 1.8e-91 340.9 232 71.6
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 9.3e-88 328.6 455 41.8
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 1.8e-86 324.3 212 74.1
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 1.8e-83 314.3 293 56.0
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 4.1e-83 313.2 226 69.0
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 6.7e-78 295.8 274 54.7
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 1.5e-74 284.6 196 68.9
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 1.1e-72 278.5 185 75.1
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 9.7e-69 265.4 460 35.9
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 1.3e-65 255.0 267 54.3
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 3.8e-65 253.4 243 58.4
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 1.2e-63 248.4 484 34.9
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 1.9e-56 224.6 188 63.8
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 9.4e-56 222.2 159 66.0
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.0e-54 218.8 139 76.3
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 3.6e-47 193.7 283 43.5
Nn1g02104 Nelumbo nucifera HOM05D003767 ORTHO05D004507 8.6e-41 172.6 126 61.9
Eucgr.H04446 Eucalyptus grandis HOM05D003767 ORTHO05D004507 1.5e-40 171.8 114 70.2
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 6.1e-39 166.4 137 57.7
CDE02G2107 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 1.7e-36 158.3 124 62.1
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 5.4e-35 153.3 155 53.5
A10p14120 Brassica napus HOM05D000085 ORTHO05D001756 8.6e-33 146.0 94 71.3
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 8.6e-33 146.0 323 36.8
SGA_v2.0_scaffold71G23819 Striga asiatica HOM05D001920 ORTHO05D004895 3.3e-32 144.1 81 84.0
CAN.G299.1 Capsicum annuum HOM05D003767 ORTHO05D004507 4.7e-31 140.2 88 75.0
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.0e-30 139.0 80 81.2
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 4.0e-30 137.1 322 34.2
Zm00001eb126550 Zea mays HOM05D003767 ORTHO05D004507 4.4e-29 133.7 131 61.8
TAR636G1925 Trochodendron aralioides HOM05D003767 ORTHO05D004507 4.1e-27 127.1 76 77.6
TAR636G2499 Trochodendron aralioides HOM05D003767 ORTHO05D004507 6.0e-26 123.2 77 79.2
RcHm_v2.0_Chr2g0172981 Rosa chinensis HOM05D003767 ORTHO05D004507 6.6e-25 119.8 152 45.4
Zm00001eb115470 Zea mays HOM05D003767 ORTHO05D004507 7.5e-21 106.3 90 62.2
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 1.3e-20 105.5 63 77.8
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 1.7e-20 105.1 84 57.1
RcHm_v2.0_Chr2g0172961 Rosa chinensis HOM05D003767 ORTHO05D004507 4.9e-20 103.6 62 75.8
Glyma.03G240651 Glycine max HOM05D003767 ORTHO05D004507 8.3e-20 102.8 94 54.3
Zm00001eb275300 Zea mays HOM05D003767 ORTHO05D004507 1.1e-19 102.4 80 66.2
A10p03590 Brassica napus HOM05D003767 ORTHO05D004507 2.4e-19 101.3 65 69.2
VMungo0540G1019 Vigna mungo HOM05D003767 ORTHO05D004507 4.6e-18 97.1 81 50.6
RcHm_v2.0_Chr2g0172971 Rosa chinensis HOM05D003767 ORTHO05D004507 1.5e-16 92.0 64 59.4
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 2.5e-16 91.3 52 78.8
SMO304G0024 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 4.1e-11 73.9 154 36.4
RcHm_v2.0_Chr2g0172951 Rosa chinensis HOM05D003767 ORTHO05D004507 7.8e-10 69.7 51 62.7
RcHm_v2.0_Chr6g0303351 Rosa chinensis HOM05D003767 ORTHO05D004507 7.8e-10 69.7 48 68.8
SMO164G0207 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 3.3e-08 64.3 109 38.5
BcaC01g04986 Brassica carinata HOM05D002285 ORTHO05D004192 1.4e-06 58.9 44 61.4


User provided reference genes

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