Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.F01538 Erythranthe guttata HOM05D004899 ORTHO05D006580 2.2e-203 712.2 394 100.0
MSTRG.8229 Avicennia marina HOM05D004899 ORTHO05D006580 7.0e-178 627.5 394 88.3
SalBow6G5574 Salvia bowleyana HOM05D004899 ORTHO05D006580 1.9e-170 602.8 417 82.5
SGA_v2.0_scaffold426G51496 Striga asiatica HOM05D004899 ORTHO05D006580 1.3e-168 596.7 394 83.5
Dinv06242 Davidia involucrata HOM05D004899 ORTHO05D006580 1.8e-165 586.3 394 83.0
CSS0003371 Camellia sinensis var. sinensis HOM05D004899 ORTHO05D006580 5.8e-164 581.3 394 82.0
Actinidia34758 Actinidia chinensis HOM05D004899 ORTHO05D006580 1.1e-162 577.0 394 81.2
Rhsim09G0133700 Rhododendron simsii HOM05D004899 ORTHO05D006580 2.1e-161 572.8 394 80.7
PGSC0003DMG400023503 Solanum tuberosum HOM05D004899 ORTHO05D006580 2.7e-161 572.4 394 81.5
Solyc05g054950.2 Solanum lycopersicum HOM05D004899 ORTHO05D006580 4.6e-161 571.6 394 81.5
Manes.08G140200 Manihot esculenta HOM05D004899 ORTHO05D006580 6.6e-160 567.8 394 81.2
Sopen05g033410 Solanum pennellii HOM05D004899 ORTHO05D006580 6.6e-160 567.8 394 81.2
Cc02_g08720 Coffea canephora HOM05D004899 ORTHO05D006580 9.6e-159 563.9 404 80.0
Peaxi162Scf00015g02911 Petunia axillaris HOM05D004899 ORTHO05D006580 9.6e-159 563.9 394 79.7
CiPaw.08G118600 Carya illinoinensis HOM05D004899 ORTHO05D006580 2.8e-158 562.4 394 78.7
CAN.G1465.15 Capsicum annuum HOM05D004899 ORTHO05D006580 8.1e-158 560.8 394 79.9
Potri.019G020000 Populus trichocarpa HOM05D004899 ORTHO05D006580 1.4e-157 560.1 394 76.9
GSVIVG01023441001 Vitis vinifera HOM05D004899 ORTHO05D006580 5.2e-157 558.1 394 79.7
Potri.013G047800 Populus trichocarpa HOM05D004899 ORTHO05D006580 9.0e-157 557.4 394 76.9
TAR362G0172 Trochodendron aralioides HOM05D004899 ORTHO05D006580 9.0e-157 557.4 394 78.9
ClCG11G010490 Citrullus lanatus HOM05D004899 ORTHO05D006580 2.0e-156 556.2 394 78.9
Thecc.05G269900 Theobroma cacao HOM05D004899 ORTHO05D006580 2.6e-156 555.8 394 77.9
Lj2A44T81 Lonicera japonica HOM05D004899 ORTHO05D006580 1.3e-155 553.5 438 72.8
CANSAT54G0581 Cannabis sativa HOM05D004899 ORTHO05D006580 1.7e-155 553.1 394 78.2
Duzib106G1539 Durio zibethinus HOM05D004899 ORTHO05D006580 2.9e-155 552.4 394 76.9
MELO3C008694.2 Cucumis melo HOM05D004899 ORTHO05D006580 6.4e-155 551.2 394 78.4
Sabra19G0032200 Salix brachista HOM05D004899 ORTHO05D006580 6.4e-155 551.2 394 77.7
CsaV3_2G009880 Cucumis sativus L. HOM05D004899 ORTHO05D006580 8.4e-155 550.8 394 78.2
PGR142G4366 Punica granatum HOM05D004899 ORTHO05D006580 8.4e-155 550.8 394 78.4
FvH4_6g01740 Fragaria vesca HOM05D004899 ORTHO05D006580 1.9e-154 549.7 394 77.2
RcHm_v2.0_Chr3g0449481 Rosa chinensis HOM05D004899 ORTHO05D006580 3.2e-154 548.9 394 77.4
FAN14G2287 Fragaria x ananassa HOM05D004899 ORTHO05D006580 2.1e-153 546.2 394 76.6
FAN14G4075 Fragaria x ananassa HOM05D004899 ORTHO05D006580 2.1e-153 546.2 394 76.6
Prupe.6G350900 Prunus persica HOM05D004899 ORTHO05D006580 2.1e-153 546.2 394 78.7
FAN05G0331 Fragaria x ananassa HOM05D004899 ORTHO05D006580 4.6e-153 545.0 394 76.4
FAN05G3121 Fragaria x ananassa HOM05D004899 ORTHO05D006580 4.6e-153 545.0 394 76.4
TWI36G0265 Tripterygium wilfordii HOM05D004899 ORTHO05D006580 7.8e-153 544.3 392 76.0
FAN09G4068 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.0e-152 543.9 394 76.4
Eucgr.B02154 Eucalyptus grandis HOM05D004899 ORTHO05D006580 1.3e-152 543.5 394 77.9
MBI07_g12932_MAGBIO Magnolia biondii HOM05D004899 ORTHO05D006580 3.9e-152 542.0 395 78.5
QL03p029772 Quercus lobata HOM05D004899 ORTHO05D006580 6.6e-152 541.2 410 75.4
MD04G1231200 Malus domestica HOM05D004899 ORTHO05D006580 8.7e-152 540.8 395 77.5
Nn1g02931 Nelumbo nucifera HOM05D004899 ORTHO05D006580 8.7e-152 540.8 394 77.7
HanXRQChr08g0216941 Helianthus annuus HOM05D004899 ORTHO05D006580 2.5e-151 539.3 394 74.4
Sp3g03310 Schrenkiella parvula HOM05D004899 ORTHO05D006580 7.3e-151 537.7 395 71.1
Gohir.A11G246300 Gossypium hirsutum HOM05D004899 ORTHO05D006580 1.3e-150 537.0 394 74.9
AL3G14410 Arabidopsis lyrata HOM05D004899 ORTHO05D006580 3.6e-150 535.4 395 70.9
Gohir.D11G256500 Gossypium hirsutum HOM05D004899 ORTHO05D006580 3.6e-150 535.4 394 75.1
Carub.0003s0362 Capsella rubella HOM05D004899 ORTHO05D006580 6.2e-150 534.6 395 70.6
Gorai.007G274800 Gossypium raimondii HOM05D004899 ORTHO05D006580 6.2e-150 534.6 394 75.1
Sed0011238 Sechium edule HOM05D004899 ORTHO05D006580 1.1e-149 533.9 397 76.3
THA.LOC104820770 Tarenaya hassleriana HOM05D004899 ORTHO05D006580 3.1e-149 532.3 395 70.6
Lsat_1_v5_gn_8_25181 Lactuca sativa HOM05D004899 ORTHO05D006580 6.9e-149 531.2 397 74.3
AT3G04460 Arabidopsis thaliana HOM05D004899 ORTHO05D006580 1.2e-148 530.4 395 70.4
ECA233G1223 Erigeron canadensis HOM05D004899 ORTHO05D006580 2.6e-148 529.3 394 71.3
Thhalv10020878m.g Eutrema salsugineum HOM05D004899 ORTHO05D006580 7.6e-148 527.7 397 70.0
Sc20g0000690 Simmondsia chinensis HOM05D004899 ORTHO05D006580 7.6e-148 527.7 394 73.1
Aqoxy5G00161 Aquilegia oxysepala HOM05D004899 ORTHO05D006580 2.9e-147 525.8 394 76.9
Aa31LG5G14890 Aethionema arabicum HOM05D004899 ORTHO05D006580 4.2e-146 521.9 395 71.9
unitig_899.g15065 Utricularia gibba HOM05D004899 ORTHO05D006580 4.2e-146 521.9 387 79.3
PSO674G0057 Papaver somniferum HOM05D004899 ORTHO05D006580 4.6e-145 518.5 394 73.9
Hund22166 Selenicereus undatus HOM05D004899 ORTHO05D006580 7.9e-145 517.7 394 70.8
EL10Ac4g08990 Beta vulgaris HOM05D004899 ORTHO05D006580 2.3e-144 516.2 394 70.1
Ciclev10024089m.g Citrus clementina HOM05D004899 ORTHO05D006580 3.0e-144 515.8 370 78.1
arahy.Tifrunner.gnm1.ann1.A8VMLZ Arachis hypogaea HOM05D004899 ORTHO05D006580 3.9e-144 515.4 396 77.0
A03p33610 Brassica napus HOM05D004899 ORTHO05D006580 3.9e-144 515.4 395 69.1
arahy.Tifrunner.gnm1.ann1.VXFY9N Arachis hypogaea HOM05D004899 ORTHO05D006580 5.1e-144 515.0 396 76.8
BolC3t16350H Brassica oleracea HOM05D004899 ORTHO05D006580 6.7e-144 514.6 395 69.4
BcaC01g04376 Brassica carinata HOM05D004899 ORTHO05D006580 4.3e-143 511.9 395 68.9
C03p40810 Brassica napus HOM05D004899 ORTHO05D006580 4.3e-143 511.9 395 68.9
BraA03t12536Z Brassica rapa HOM05D004899 ORTHO05D006580 1.3e-142 510.4 400 68.5
Nitab4.5_0003965g0030 Nicotiana tabacum HOM05D004899 ORTHO05D006580 4.8e-142 508.4 394 75.1
DCAR_023087 Daucus carota HOM05D004899 ORTHO05D006580 6.2e-142 508.1 393 73.8
Glyma.03G250100 Glycine max HOM05D004899 ORTHO05D006580 1.4e-141 506.9 394 75.4
Atru.chr2.1001 Acer truncatum HOM05D004899 ORTHO05D006580 1.8e-141 506.5 370 77.3
A05p43040 Brassica napus HOM05D004899 ORTHO05D006580 1.8e-141 506.5 394 65.2
Glyma.19G247700 Glycine max HOM05D004899 ORTHO05D006580 2.4e-141 506.1 394 75.4
COL.COLO4_15501 Corchorus olitorius HOM05D004899 ORTHO05D006580 2.6e-140 502.7 378 73.5
VMungo0540G0495 Vigna mungo HOM05D004899 ORTHO05D006580 3.4e-140 502.3 394 74.1
Phvul.006G104800 Phaseolus vulgaris HOM05D004899 ORTHO05D006580 9.9e-140 500.7 394 73.6
Zm00001eb046420 Zea mays HOM05D004899 ORTHO05D006580 9.9e-140 500.7 395 72.2
Os10g0467200 Oryza sativa ssp. japonica HOM05D004899 ORTHO05D006580 1.3e-139 500.4 395 71.9
AUR62040914 Chenopodium quinoa HOM05D004899 ORTHO05D006580 4.9e-139 498.4 394 64.7
Ca_11390_v3 Cicer arietinum L. HOM05D004899 ORTHO05D006580 4.9e-139 498.4 394 75.1
BcaB04g19333 Brassica carinata HOM05D004899 ORTHO05D006580 1.6e-137 493.4 378 68.0
vmacro10377 Vaccinium macrocarpon HOM05D004899 ORTHO05D006580 2.5e-135 486.1 426 68.1
Lj1g0026343 Lotus japonicus HOM05D004899 ORTHO05D006580 4.3e-135 485.3 410 70.7
Lalb_Chr04g0253351 Lupinus albus HOM05D004899 ORTHO05D006580 6.9e-133 478.0 402 70.9
TPR.G10414 Trifolium pratense HOM05D004899 ORTHO05D006580 9.0e-133 477.6 396 71.7
CDE05G2618 Ceratophyllum demersum HOM05D004899 ORTHO05D006580 7.6e-132 474.6 398 68.8
ATR0736G049 Amborella trichopoda HOM05D004899 ORTHO05D006580 6.7e-128 461.5 395 68.4
Nitab4.5_0000914g0090 Nicotiana tabacum HOM05D004899 ORTHO05D006580 6.7e-128 461.5 394 71.6
BcaC05g30197 Brassica carinata HOM05D004899 ORTHO05D006580 7.4e-127 458.0 403 62.0
BcaC05g29943 Brassica carinata HOM05D004899 ORTHO05D006580 1.4e-125 453.8 394 61.4
AUR62004828 Chenopodium quinoa HOM05D004899 ORTHO05D006580 1.4e-122 443.7 358 66.8
Medtr1g116380 Medicago truncatula HOM05D004899 ORTHO05D006580 1.1e-117 427.6 372 69.9
C05p62800 Brassica napus HOM05D004899 ORTHO05D006580 2.4e-109 399.8 381 59.1
Ah.06g191810 Amaranthus hybridus HOM05D004899 ORTHO05D006580 6.9e-109 398.3 394 54.3
Psat0s1997g0040 Pisum sativum HOM05D004899 ORTHO05D006580 2.6e-103 379.8 346 69.9
SMO367G0182 Selaginella moellendorffii HOM05D004899 ORTHO05D006580 1.2e-97 360.9 394 52.3
HPP92_008536 Vanilla planifolia HOM05D004899 ORTHO05D006580 3.1e-93 346.3 287 72.8
Pp3c17_6400 Physcomitrium patens HOM05D004899 ORTHO05D006580 4.2e-90 335.9 399 48.9
AagrBONN_evm.TU.Sc2ySwM_228.2413 Anthoceros agrestis HOM05D004899 ORTHO05D006580 1.5e-87 327.4 399 48.1
Cpa.g.sc306.4 Carica papaya HOM05D004899 ORTHO05D006580 5.7e-87 325.5 394 50.0
CARHR078590 Cardamine hirsuta HOM05D004899 ORTHO05D006580 9.8e-87 324.7 247 67.6
Haze_04413 Corylus avellana HOM05D004899 ORTHO05D006580 1.7e-86 323.9 328 64.0
Mapoly0097s0077 Marchantia polymorpha HOM05D004899 ORTHO05D006580 3.5e-76 289.7 294 55.1
RhsimUnG0045000 Rhododendron simsii HOM05D004899 ORTHO05D006580 5.0e-75 285.8 378 47.4
SHI31416 Sapria himalayana HOM05D004899 ORTHO05D006580 9.2e-69 265.0 389 51.7
MD12G1249500 Malus domestica HOM05D004899 ORTHO05D006580 6.0e-68 262.3 302 51.7
CANSAT80G2786 Cannabis sativa HOM05D004899 ORTHO05D006580 1.6e-65 254.2 182 68.7
CANSAT80G2333 Cannabis sativa HOM05D004899 ORTHO05D006580 4.7e-65 252.7 182 68.1
Oeu050631.1 Olea europaea HOM05D004899 ORTHO05D006580 8.9e-64 248.4 292 52.4
CBR_g51833 Chara braunii HOM05D004899 ORTHO05D006580 5.4e-53 212.6 540 32.0
CARHR078600 Cardamine hirsuta HOM05D004899 ORTHO05D006580 5.6e-50 202.6 153 73.2
Cre06.g263602 Chlamydomonas reinhardtii HOM05D004899 ORTHO05D006580 1.4e-48 198.0 419 32.5
Hma1.2p1_1336F.1_g276500 Hydrangea macrophylla HOM05D004899 ORTHO05D006580 4.4e-47 193.0 122 77.9
TPR.G8890 Trifolium pratense HOM05D001167 ORTHO05D001054 1.1e-45 188.3 165 59.4
BolC5t34933H Brassica oleracea HOM05D004899 ORTHO05D006580 1.9e-45 187.6 125 76.8
MCO09G554 Micromonas commoda HOM05D004899 ORTHO05D006580 7.3e-42 175.6 407 33.2
MD00G1148800 Malus domestica HOM05D004899 ORTHO05D006580 1.2e-41 174.9 205 49.8
PRCOL_00005674 Prasinoderma coloniale HOM05D004899 ORTHO05D006580 1.1e-37 161.8 407 32.2
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 9.3e-37 158.7 165 51.5
BraA05t23048Z Brassica rapa HOM05D004899 ORTHO05D006580 1.2e-36 158.3 92 85.9
Oeu040904.1 Olea europaea HOM05D004899 ORTHO05D006580 2.4e-32 144.1 71 91.5
C01p22380 Brassica napus HOM05D004899 ORTHO05D006580 6.4e-30 136.0 137 53.3
Cc06_g01540 Coffea canephora HOM05D004899 ORTHO05D006580 3.2e-29 133.7 125 64.8
Cc05_g01300 Coffea canephora HOM05D004899 ORTHO05D006580 4.2e-29 133.3 88 79.5
MD08G1214200 Malus domestica HOM05D004899 ORTHO05D006580 4.8e-25 119.8 81 74.1
SEGI_05516 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 8.1e-25 119.0 88 68.2
BolC6t38557H Brassica oleracea HOM05D004899 ORTHO05D006580 5.3e-24 116.3 123 52.8
BraA04t16133Z Brassica rapa HOM05D004899 ORTHO05D006580 4.5e-23 113.2 104 57.7
BcaC06g35909 Brassica carinata HOM05D004899 ORTHO05D006580 1.7e-22 111.3 150 42.7
Cc06_g14670 Coffea canephora HOM05D004899 ORTHO05D006580 2.9e-22 110.5 130 63.8
SEGI_08581 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 3.2e-21 107.1 148 41.2
Psat3g057720 Pisum sativum HOM05D004899 ORTHO05D006580 4.8e-17 93.2 50 78.0
SalBow6G6423 Salvia bowleyana HOM05D031023 ORTHO05D019122 1.2e-15 88.6 46 93.5
FAN18G0756 Fragaria x ananassa HOM05D004899 ORTHO05D019122 5.8e-15 86.3 80 61.2
SEGI_06182 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 1.4e-13 81.6 48 68.8
FvH4_3g30700 Fragaria vesca HOM05D004899 ORTHO05D019122 4.2e-13 80.1 51 78.4
BcaC09g50711 Brassica carinata HOM05D004899 ORTHO05D006580 8.7e-11 72.4 120 38.3
Psat3g113200 Pisum sativum HOM05D004899 ORTHO05D034818 1.9e-10 71.2 41 75.6
FvH4_4g13630 Fragaria vesca HOM05D004899 ORTHO05D019122 2.5e-10 70.9 44 79.5
Cc04_g06470 Coffea canephora HOM05D004899 ORTHO05D034818 9.7e-10 68.9 38 86.8
Haze_02280 Corylus avellana HOM05D000013 ORTHO05D000689 9.0e-08 62.4 35 82.9
FAN05G0601 Fragaria x ananassa HOM05D004899 ORTHO05D006580 2.6e-07 60.8 57 49.1


User provided reference genes

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