Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.F01404 Erythranthe guttata HOM05D003492 ORTHO05D005115 0.0e+00 3662.5 1828 100.0
MSTRG.8339 Avicennia marina HOM05D003492 ORTHO05D005115 0.0e+00 2977.2 1826 81.2
SGA_v2.0_scaffold365G49997 Striga asiatica HOM05D003492 ORTHO05D005115 0.0e+00 2704.5 1852 73.7
Dinv10611 Davidia involucrata HOM05D003492 ORTHO05D005115 0.0e+00 2529.6 1854 69.5
GSVIVG01032797001 Vitis vinifera HOM05D003492 ORTHO05D005115 0.0e+00 2426.4 1930 64.7
Sopen06g014600 Solanum pennellii HOM05D003492 ORTHO05D005115 0.0e+00 2414.8 1818 67.3
Gohir.D10G252000 Gossypium hirsutum HOM05D003492 ORTHO05D005115 0.0e+00 2394.8 1826 66.8
CSS0013780 Camellia sinensis var. sinensis HOM05D003492 ORTHO05D005115 0.0e+00 2394.0 1826 67.4
Manes.07G131200 Manihot esculenta HOM05D003492 ORTHO05D005115 0.0e+00 2394.0 1826 66.0
Prupe.2G252000 Prunus persica HOM05D003492 ORTHO05D005115 0.0e+00 2393.6 1826 66.1
Gorai.011G292500 Gossypium raimondii HOM05D003492 ORTHO05D005115 0.0e+00 2392.8 1826 66.7
QL08p063313 Quercus lobata HOM05D003492 ORTHO05D005115 0.0e+00 2392.1 1942 63.1
Nn2g10890 Nelumbo nucifera HOM05D003492 ORTHO05D005115 0.0e+00 2387.8 1831 65.5
CANSAT56G1673 Cannabis sativa HOM05D003492 ORTHO05D005115 0.0e+00 2385.9 1838 65.6
TWI09G0940 Tripterygium wilfordii HOM05D003492 ORTHO05D005115 0.0e+00 2383.2 1834 65.2
Potri.008G070300 Populus trichocarpa HOM05D003492 ORTHO05D005115 0.0e+00 2375.9 1832 65.5
Duzib106G0351 Durio zibethinus HOM05D003492 ORTHO05D005115 0.0e+00 2369.0 1827 65.8
FvH4_7g24630 Fragaria vesca HOM05D003492 ORTHO05D005115 0.0e+00 2364.0 1839 65.0
vmacro10035 Vaccinium macrocarpon HOM05D003492 ORTHO05D005115 0.0e+00 2359.7 1939 63.2
RcHm_v2.0_Chr1g0370461 Rosa chinensis HOM05D003492 ORTHO05D005115 0.0e+00 2357.4 1835 65.0
MD07G1223400 Malus domestica HOM05D003492 ORTHO05D005115 0.0e+00 2355.9 1828 65.2
Lsat_1_v5_gn_2_124500 Lactuca sativa HOM05D003492 ORTHO05D005115 0.0e+00 2354.7 1840 65.3
Cfa001305 Carpinus fangiana HOM05D003492 ORTHO05D005115 0.0e+00 2353.9 1793 66.4
Rhsim09G0177900 Rhododendron simsii HOM05D003492 ORTHO05D005115 0.0e+00 2350.1 1945 62.6
FAN06G4945 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2346.2 1845 64.6
FAN10G4174 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2343.5 1857 64.1
Atru.chr12.67 Acer truncatum HOM05D003492 ORTHO05D005115 0.0e+00 2342.4 1829 65.2
FAN01G1605 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2322.0 1893 63.0
MELO3C026794.2 Cucumis melo HOM05D003492 ORTHO05D005115 0.0e+00 2297.7 1820 63.3
Solyc06g048460.2 Solanum lycopersicum HOM05D003492 ORTHO05D005115 0.0e+00 2297.7 1694 68.9
Thecc.10G014500 Theobroma cacao HOM05D003492 ORTHO05D005115 0.0e+00 2297.7 1698 68.4
HanXRQChr14g0459601 Helianthus annuus HOM05D003492 ORTHO05D005115 0.0e+00 2297.3 1823 63.9
Sed0003450 Sechium edule HOM05D003492 ORTHO05D005115 0.0e+00 2297.3 1822 63.2
PSO339G2087 Papaver somniferum HOM05D003492 ORTHO05D005115 0.0e+00 2295.4 1832 63.6
Aqoxy4G02502 Aquilegia oxysepala HOM05D003492 ORTHO05D005115 0.0e+00 2294.6 1834 63.2
ClCG07G004320 Citrullus lanatus HOM05D003492 ORTHO05D005115 0.0e+00 2291.9 1820 63.1
PSO384G0172 Papaver somniferum HOM05D003492 ORTHO05D005115 0.0e+00 2286.5 1832 63.5
Sabra08G0051700 Salix brachista HOM05D003492 ORTHO05D005115 0.0e+00 2286.1 1969 60.7
CsaV3_5G010260 Cucumis sativus L. HOM05D003492 ORTHO05D005115 0.0e+00 2280.8 1820 63.0
ECA238G3428 Erigeron canadensis HOM05D003492 ORTHO05D005115 0.0e+00 2276.9 1832 63.2
TPR.G38386 Trifolium pratense HOM05D003492 ORTHO05D005115 0.0e+00 2276.5 1822 62.8
Psat2g032000 Pisum sativum HOM05D003492 ORTHO05D005115 0.0e+00 2256.1 1836 62.0
arahy.Tifrunner.gnm1.ann1.J7W2E5 Arachis hypogaea HOM05D003492 ORTHO05D005115 0.0e+00 2254.6 1831 62.5
Lalb_Chr04g0250511 Lupinus albus HOM05D003492 ORTHO05D005115 0.0e+00 2250.7 1825 62.7
Glyma.02G258100 Glycine max HOM05D003492 ORTHO05D005115 0.0e+00 2246.9 1833 62.2
Phvul.008G222900 Phaseolus vulgaris HOM05D003492 ORTHO05D005115 0.0e+00 2241.8 1826 61.9
LjContig00357g0011776 Lotus japonicus HOM05D003492 ORTHO05D005115 0.0e+00 2240.7 1822 62.2
Haze_17240 Corylus avellana HOM05D003492 ORTHO05D005115 0.0e+00 2239.2 1893 61.5
Medtr5g082890 Medicago truncatula HOM05D003492 ORTHO05D005115 0.0e+00 2237.6 1825 62.0
arahy.Tifrunner.gnm1.ann1.V2YUX7 Arachis hypogaea HOM05D003492 ORTHO05D005115 0.0e+00 2236.1 1869 61.3
Ca_05974_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 0.0e+00 2234.9 1825 61.8
DCAR_011823 Daucus carota HOM05D003492 ORTHO05D005115 0.0e+00 2224.9 1725 65.7
Eucgr.G03070 Eucalyptus grandis HOM05D003492 ORTHO05D005115 0.0e+00 2199.5 1728 64.0
Sc11g0005130 Simmondsia chinensis HOM05D003492 ORTHO05D005115 0.0e+00 2197.5 1818 62.4
THA.LOC104816541 Tarenaya hassleriana HOM05D003492 ORTHO05D005115 0.0e+00 2192.2 1832 61.7
VMungo0647G1152 Vigna mungo HOM05D003492 ORTHO05D005115 0.0e+00 2185.6 1826 61.0
Glyma.14G058400 Glycine max HOM05D003492 ORTHO05D005115 0.0e+00 2179.1 1826 60.4
AUR62012268 Chenopodium quinoa HOM05D003492 ORTHO05D005115 0.0e+00 2152.5 1819 61.0
PGR142G1812 Punica granatum HOM05D003492 ORTHO05D005115 0.0e+00 2151.3 1828 60.5
Gohir.A10G240100 Gossypium hirsutum HOM05D003492 ORTHO05D005115 0.0e+00 2137.8 1595 67.8
AL6G15450 Arabidopsis lyrata HOM05D003492 ORTHO05D005115 0.0e+00 2127.4 1825 60.1
Sp6g37310 Schrenkiella parvula HOM05D003492 ORTHO05D005115 0.0e+00 2124.4 1829 60.4
AT5G05560 Arabidopsis thaliana HOM05D003492 ORTHO05D005115 0.0e+00 2124.0 1823 60.1
AUR62022903 Chenopodium quinoa HOM05D003492 ORTHO05D005115 0.0e+00 2112.4 1828 59.8
EL10Ac2g04850 Beta vulgaris HOM05D003492 ORTHO05D005115 0.0e+00 2109.0 1947 57.2
Carub.0006s0446 Capsella rubella HOM05D003492 ORTHO05D005115 0.0e+00 2107.0 1835 59.7
BcaB01g05759 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 2102.8 1830 59.9
Nitab4.5_0000797g0050 Nicotiana tabacum HOM05D003492 ORTHO05D005115 0.0e+00 2100.9 1760 63.1
C02p02390 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 2098.2 1845 59.9
BraA03t09597Z Brassica rapa HOM05D003492 ORTHO05D005115 0.0e+00 2072.4 1836 58.8
CARHR207700 Cardamine hirsuta HOM05D003492 ORTHO05D005115 0.0e+00 2068.9 1825 59.6
BraA02t04853Z Brassica rapa HOM05D003492 ORTHO05D005115 0.0e+00 2066.2 1868 58.8
BcaB01g05953 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 2055.4 1826 59.0
BolC2t06204H Brassica oleracea HOM05D003492 ORTHO05D005115 0.0e+00 2048.5 1863 58.6
C03p02660 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 2045.8 1851 58.5
A03p02330 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 2040.8 1836 58.2
ATR0681G383 Amborella trichopoda HOM05D003492 ORTHO05D005115 0.0e+00 2031.9 1838 56.7
BolC3t12820H Brassica oleracea HOM05D003492 ORTHO05D005115 0.0e+00 2018.0 1862 57.6
Aa31LG11G6620 Aethionema arabicum HOM05D003492 ORTHO05D005115 0.0e+00 2005.7 1848 57.4
Ah.16g103640 Amaranthus hybridus HOM05D003492 ORTHO05D005115 0.0e+00 1968.4 1826 56.9
unitig_60.g25675 Utricularia gibba HOM05D003492 ORTHO05D005115 0.0e+00 1938.7 1875 56.6
Thhalv10012420m.g Eutrema salsugineum HOM05D003492 ORTHO05D005115 0.0e+00 1925.6 1840 56.0
Cpa.g.sc19.161 Carica papaya HOM05D003492 ORTHO05D005115 0.0e+00 1921.7 1865 55.9
Ciclev10030498m.g Citrus clementina HOM05D003492 ORTHO05D005115 0.0e+00 1920.6 1450 66.4
TAR623G0495 Trochodendron aralioides HOM05D003492 ORTHO05D005115 0.0e+00 1848.2 1472 64.3
Oeu049666.1 Olea europaea HOM05D003492 ORTHO05D005115 0.0e+00 1820.4 1409 67.3
BcaB05g21711 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 1728.0 1522 59.6
Cc02_g06280 Coffea canephora HOM05D003492 ORTHO05D005115 0.0e+00 1727.2 1326 65.9
Hund15919 Selenicereus undatus HOM05D003492 ORTHO05D005115 0.0e+00 1633.6 1219 67.8
FAN03G1412 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 1627.8 1211 67.2
Pp3c11_19460 Physcomitrium patens HOM05D003492 ORTHO05D005115 0.0e+00 1453.0 1931 43.4
CiPaw.01G300000 Carya illinoinensis HOM05D003492 ORTHO05D005115 0.0e+00 1426.0 972 73.0
Mapoly0044s0071 Marchantia polymorpha HOM05D003492 ORTHO05D005115 0.0e+00 1423.3 1909 42.8
AagrBONN_evm.TU.Sc2ySwM_344.5492 Anthoceros agrestis HOM05D003492 ORTHO05D005115 0.0e+00 1395.6 1778 44.9
Nitab4.5_0011089g0010 Nicotiana tabacum HOM05D003492 ORTHO05D005115 0.0e+00 1357.0 1354 55.4
Actinidia13945 Actinidia chinensis HOM05D003492 ORTHO05D005115 0.0e+00 1330.9 1051 64.3
Os05g0354300 Oryza sativa ssp. japonica HOM05D003492 ORTHO05D005115 0.0e+00 1181.4 943 62.8
Zm00001eb286110 Zea mays HOM05D003492 ORTHO05D005115 0.0e+00 1164.8 1220 51.1
Peaxi162Scf00284g00913 Petunia axillaris HOM05D003492 ORTHO05D005115 0.0e+00 1160.6 782 74.2
MBI15_g19421_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 0.0e+00 1155.6 1155 54.1
SMO331G0080 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 0.0e+00 1144.8 1811 38.9
Lj8C65G6 Lonicera japonica HOM05D003492 ORTHO05D005115 0.0e+00 1109.7 919 63.9
HPP92_012039 Vanilla planifolia HOM05D003492 ORTHO05D005115 0.0e+00 1104.4 904 62.3
CBR_g22845 Chara braunii HOM05D003492 ORTHO05D005115 8.9e-300 1034.6 2207 33.9
Peaxi162Scf00284g00912 Petunia axillaris HOM05D003492 ORTHO05D005115 6.2e-293 1011.9 913 58.4
CAN.G78.68 Capsicum annuum HOM05D003492 ORTHO05D005115 2.2e-266 923.7 815 59.3
SMO105G0008 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 2.4e-220 770.8 813 51.2
CDE12G0911 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 5.7e-214 749.6 724 53.5
CAN.G1193.3 Capsicum annuum HOM05D003492 ORTHO05D005115 1.2e-211 741.9 513 71.5
Actinidia13944 Actinidia chinensis HOM05D003492 ORTHO05D005115 7.5e-206 722.6 551 65.9
SHI03328 Sapria himalayana HOM05D003492 ORTHO05D005115 3.8e-202 710.3 513 68.0
CiPaw.01G300100 Carya illinoinensis HOM05D003492 ORTHO05D005115 4.8e-197 693.3 635 57.8
FAN03G1608 Fragaria x ananassa HOM05D003492 ORTHO05D005115 8.3e-189 666.0 629 55.5
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 1.5e-182 645.2 871 46.2
Rhsim10G0095300 Rhododendron simsii HOM05D003492 ORTHO05D005115 4.1e-180 637.1 565 61.1
SEGI_27844 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 3.0e-178 630.9 523 60.0
MCO04G065 Micromonas commoda HOM05D003492 ORTHO05D005115 1.4e-172 612.1 887 41.5
CDE12G0028 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 2.6e-166 591.3 1078 36.5
SalBow5G5368 Salvia bowleyana HOM05D003492 ORTHO05D005115 7.6e-150 536.6 373 72.1
SEGI_00595 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 1.7e-149 535.4 730 43.0
SHI03332 Sapria himalayana HOM05D003492 ORTHO05D005115 2.9e-149 534.6 432 62.3
Cc02_g06300 Coffea canephora HOM05D003492 ORTHO05D005115 3.5e-147 527.7 399 65.2
CAN.G1782.1 Capsicum annuum HOM05D003492 ORTHO05D005115 6.0e-147 526.9 438 62.1
CAN.G78.71 Capsicum annuum HOM05D003492 ORTHO05D005115 2.7e-131 474.9 324 72.8
Hund29345 Selenicereus undatus HOM05D003492 ORTHO05D005115 7.6e-126 456.8 535 47.7
Hund28567 Selenicereus undatus HOM05D003492 ORTHO05D005115 1.2e-118 433.0 547 45.7
Lj8A65G43 Lonicera japonica HOM05D003492 ORTHO05D005115 7.4e-113 413.7 309 70.2
Cre13.g579100 Chlamydomonas reinhardtii HOM05D003492 ORTHO05D005115 7.7e-110 403.7 838 34.7
Actinidia35642 Actinidia chinensis HOM05D003492 ORTHO05D005115 9.7e-105 386.7 386 56.5
HPP92_012038 Vanilla planifolia HOM05D003492 ORTHO05D005115 1.8e-103 382.5 379 53.8
TAR623G0911 Trochodendron aralioides HOM05D003492 ORTHO05D005115 1.2e-102 379.8 327 59.6
Nitab4.5_0011089g0020 Nicotiana tabacum HOM05D003492 ORTHO05D005115 3.2e-100 371.7 394 54.6
Gorai.011G292700 Gossypium raimondii HOM05D003492 ORTHO05D005115 8.2e-96 357.1 253 71.1
Hma1.2p1_0235F.1_g098570 Hydrangea macrophylla HOM05D003492 ORTHO05D005115 4.5e-94 351.3 338 55.6
CAN.G78.70 Capsicum annuum HOM05D003492 ORTHO05D005115 3.7e-88 331.6 186 86.6
Cfa022850 Carpinus fangiana HOM05D003492 ORTHO05D005115 4.8e-88 331.3 1012 28.5
Ca_30996_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 6.8e-82 310.8 309 54.0
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 2.0e-70 272.7 422 40.3
Lj8A65T41 Lonicera japonica HOM05D003492 ORTHO05D005115 1.7e-56 226.5 179 63.7
Psat2g110320 Pisum sativum HOM05D003492 ORTHO05D005115 3.6e-51 208.8 337 38.0
HPP92_012036 Vanilla planifolia HOM05D003492 ORTHO05D005115 6.6e-45 188.0 229 44.5
CAN.G78.73 Capsicum annuum HOM05D003492 ORTHO05D005115 9.9e-41 174.1 301 34.9
Lsat_1_v5_gn_2_57160 Lactuca sativa HOM05D003492 ORTHO05D022499 3.8e-40 172.2 227 42.3
Thhalv10015394m.g Eutrema salsugineum HOM05D003492 ORTHO05D035223 1.2e-38 167.2 148 60.1
Cc02_g06290 Coffea canephora HOM05D003492 ORTHO05D005115 1.7e-37 163.3 101 78.2
Lsat_1_v5_gn_4_75100 Lactuca sativa HOM05D003492 ORTHO05D016080 3.3e-36 159.1 116 63.8
Psat7g005400 Pisum sativum HOM05D003492 ORTHO05D024801 1.3e-35 157.1 357 34.5
Psat1g148680 Pisum sativum HOM05D003492 ORTHO05D024801 1.1e-34 154.1 132 57.6
Lsat_1_v5_gn_1_82880 Lactuca sativa HOM05D003492 ORTHO05D005115 1.5e-33 150.2 109 70.6
MBI08_g18764_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 5.8e-33 148.3 169 47.3
SEGI_03313 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 1.6e-30 140.2 213 37.6
HPP92_012037 Vanilla planifolia HOM05D003492 ORTHO05D005115 1.0e-29 137.5 159 45.3
CAN.G78.72 Capsicum annuum HOM05D003492 ORTHO05D019467 3.0e-29 136.0 160 45.6
SEGI_23081 Sequoiadendron giganteum HOM05D003492 ORTHO05D019467 4.3e-28 132.1 202 36.6
Duzib114G0096 Durio zibethinus HOM05D003492 ORTHO05D005115 2.4e-26 126.3 124 55.6
SHI03336 Sapria himalayana HOM05D003492 ORTHO05D005115 6.9e-26 124.8 131 49.6
SHI03333 Sapria himalayana HOM05D003492 ORTHO05D005115 4.5e-25 122.1 166 41.0
Psat2g065680 Pisum sativum HOM05D003492 ORTHO05D005115 7.6e-25 121.3 120 50.0
Rhsim10G0095400 Rhododendron simsii HOM05D003492 ORTHO05D005115 7.6e-25 121.3 103 58.3
MBI12_g24829_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D011152 4.9e-24 118.6 176 38.1
Lsat_1_v5_gn_9_80501 Lactuca sativa HOM05D003662 ORTHO05D001824 3.2e-23 115.9 144 49.3
Psat4g081200 Pisum sativum HOM05D003492 ORTHO05D000696 1.8e-21 110.2 101 52.5
SHI03327 Sapria himalayana HOM05D003492 ORTHO05D000001 3.9e-21 109.0 455 24.0
Lsat_1_v5_gn_7_99341 Lactuca sativa HOM05D003492 ORTHO05D016080 1.9e-20 106.7 105 52.4
Lj8C65T9 Lonicera japonica HOM05D003492 ORTHO05D019467 3.3e-20 105.9 130 42.3
Actinidia03517 Actinidia chinensis HOM05D003492 ORTHO05D005115 5.6e-20 105.1 54 83.3
BcaB01g05927 Brassica carinata HOM05D003492 ORTHO05D016080 7.4e-20 104.8 124 48.4
CAN.G1193.2 Capsicum annuum HOM05D003492 ORTHO05D019467 2.1e-19 103.2 127 42.5
Actinidia00955 Actinidia chinensis HOM05D003492 ORTHO05D019467 4.0e-18 99.0 109 46.8
SHI03335 Sapria himalayana HOM05D003492 ORTHO05D005115 3.4e-17 95.9 86 54.7
CAN.G78.69 Capsicum annuum HOM05D003492 ORTHO05D024801 7.6e-17 94.7 71 67.6
Psat7g097320 Pisum sativum HOM05D003492 ORTHO05D024801 7.6e-17 94.7 100 52.0
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 1.9e-15 90.1 82 53.7
Lj8A65T40 Lonicera japonica HOM05D003492 ORTHO05D005115 2.0e-09 70.1 71 56.3
GSVIVG01034775001 Vitis vinifera HOM05D003492 ORTHO05D035223 2.6e-09 69.7 58 69.0
CAN.G3101.1 Capsicum annuum HOM05D003492 ORTHO05D005115 1.0e-08 67.8 71 50.7
Lsat_1_v5_gn_6_70980 Lactuca sativa HOM05D000917 ORTHO05D016080 1.3e-08 67.4 56 60.7
Actinidia02211 Actinidia chinensis HOM05D003492 ORTHO05D005115 1.7e-08 67.0 86 44.2
DCAR_011824 Daucus carota HOM05D003492 ORTHO05D005115 2.9e-08 66.2 76 48.7
HanXRQChr15g0464841 Helianthus annuus HOM05D003492 ORTHO05D005115 2.9e-08 66.2 75 50.7
Lsat_1_v5_gn_8_83220 Lactuca sativa HOM05D003492 ORTHO05D016080 3.8e-08 65.9 72 47.2
MBI18_g01105_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 3.2e-07 62.8 60 56.7
Lsat_1_v5_gn_1_119241 Lactuca sativa HOM05D003492 ORTHO05D016080 3.6e-06 59.3 56 50.0


User provided reference genes

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