Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 5.1e-233 810.8 449 100.0
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 1.7e-79 300.8 547 45.0
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 6.0e-56 222.6 508 40.4
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 3.2e-49 200.3 352 42.9
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 5.4e-49 199.5 364 42.0
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 7.8e-48 195.7 380 41.1
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 1.1e-46 191.8 364 41.8
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 1.9e-46 191.0 354 42.4
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 4.3e-46 189.9 454 39.9
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 7.3e-46 189.1 454 37.7
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 5.8e-43 179.5 371 39.6
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 9.9e-43 178.7 377 40.1
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 4.1e-41 173.3 525 36.4
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 4.1e-41 173.3 535 35.0
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 2.7e-40 170.6 531 35.6
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 1.0e-39 168.7 488 35.7
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 4.7e-37 159.8 533 35.1
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 1.4e-36 158.3 458 34.1
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 1.8e-36 157.9 547 32.9
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 1.5e-35 154.8 520 34.0
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 2.9e-34 150.6 554 31.8
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 8.4e-34 149.1 532 34.0
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 1.2e-32 145.2 513 34.9
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 6.0e-32 142.9 501 34.9
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 1.7e-31 141.4 512 31.1
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 3.0e-31 140.6 530 32.8
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 5.1e-31 139.8 499 33.7
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 6.6e-31 139.4 301 40.2
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 6.6e-31 139.4 342 38.9
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 1.3e-29 135.2 345 36.5
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 6.2e-29 132.9 516 32.2
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 1.8e-28 131.3 467 28.9
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 2.4e-28 131.0 384 31.5
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 3.1e-28 130.6 531 32.0
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 9.0e-28 129.0 552 28.6
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 2.0e-27 127.9 524 33.8
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 7.6e-27 125.9 524 33.4
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 7.6e-27 125.9 524 33.4
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 7.6e-27 125.9 355 34.1
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 9.9e-27 125.6 498 32.1
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 2.2e-26 124.4 501 31.5
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 3.8e-26 123.6 445 33.9
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 6.4e-26 122.9 453 33.8
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 8.4e-26 122.5 500 34.2
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 1.4e-25 121.7 533 31.7
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 5.4e-25 119.8 556 29.9
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 1.2e-24 118.6 377 30.2
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 2.1e-24 117.9 587 29.8
Lj8A24G36 Lonicera japonica HOM05D004189 ORTHO05D004092 2.7e-24 117.5 305 35.7
SalBow2G2574 Salvia bowleyana HOM05D004189 ORTHO05D004092 3.5e-24 117.1 122 55.7
unitig_46.g18790 Utricularia gibba HOM05D004189 ORTHO05D004092 6.0e-24 116.3 244 36.5
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 2.3e-23 114.4 362 32.3
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 5.1e-23 113.2 605 26.9
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 6.6e-23 112.8 480 32.1
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 8.7e-23 112.5 525 30.3
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.5e-22 111.7 584 27.1
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.9e-22 111.3 389 30.3
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 2.5e-22 110.9 549 31.0
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 3.3e-22 110.5 510 31.2
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 4.3e-22 110.2 388 30.4
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 4.3e-22 110.2 360 33.3
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 5.6e-22 109.8 558 31.7
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 7.3e-22 109.4 524 30.3
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 7.3e-22 109.4 526 28.7
ECA233G5127 Erigeron canadensis HOM05D004189 ORTHO05D004092 9.6e-22 109.0 255 34.5
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 9.6e-22 109.0 378 31.2
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 1.6e-21 108.2 509 31.0
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 2.1e-21 107.8 391 28.6
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 2.8e-21 107.5 587 28.4
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 3.6e-21 107.1 298 36.9
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 8.1e-21 105.9 267 36.3
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 1.4e-20 105.1 493 27.6
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 6.9e-20 102.8 511 30.9
SalBow4G1950 Salvia bowleyana HOM05D026728 ORTHO05D004092 6.9e-20 102.8 438 30.4
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 1.2e-19 102.1 468 30.6
SGA_v2.0_scaffold60G21043 Striga asiatica HOM05D004189 ORTHO05D004092 1.5e-19 101.7 225 37.8
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 2.0e-19 101.3 328 31.4
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 2.6e-19 100.9 234 40.2
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 2.6e-19 100.9 509 29.5
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 3.4e-19 100.5 515 29.9
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 4.5e-19 100.1 609 27.3
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 5.8e-19 99.8 232 39.7
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 1.7e-18 98.2 520 30.4
SalBow4G1418 Salvia bowleyana HOM05D026728 ORTHO05D004092 1.7e-18 98.2 429 29.8
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 2.9e-18 97.4 474 28.9
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 4.9e-18 96.7 610 29.0
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 6.4e-18 96.3 599 26.5
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 1.1e-17 95.5 305 35.1
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 1.9e-17 94.7 321 34.3
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 1.9e-17 94.7 403 28.8
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 2.4e-17 94.4 460 30.9
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 2.4e-17 94.4 262 37.4
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 3.2e-17 94.0 615 25.7
GSVIVG01028976001 Vitis vinifera HOM05D004189 ORTHO05D004092 3.2e-17 94.0 171 42.7
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 5.4e-17 93.2 562 28.8
DCAR_018199 Daucus carota HOM05D004189 ORTHO05D004092 5.4e-17 93.2 569 26.9
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 5.4e-17 93.2 619 26.7
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 1.2e-16 92.0 452 30.3
FAN10G2376 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.6e-16 91.7 393 29.3
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 4.6e-16 90.1 571 27.0
MELO3C003321.2 Cucumis melo HOM05D004189 ORTHO05D004092 6.0e-16 89.7 466 30.3
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 6.0e-16 89.7 489 27.6
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.0e-15 89.0 571 26.6
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 1.8e-15 88.2 671 24.9
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 2.3e-15 87.8 291 32.3
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 3.9e-15 87.0 282 35.1
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 5.1e-15 86.7 454 28.4
BraA03t10863Z Brassica rapa HOM05D004189 ORTHO05D004092 6.7e-15 86.3 258 34.5
Nn1g01463 Nelumbo nucifera HOM05D004189 ORTHO05D004092 6.7e-15 86.3 430 30.5
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 8.7e-15 85.9 405 30.4
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 8.7e-15 85.9 380 30.8
Cfa008320 Carpinus fangiana HOM05D004189 ORTHO05D004092 1.1e-14 85.5 313 31.9
ClCG09G012920 Citrullus lanatus HOM05D004189 ORTHO05D004092 2.5e-14 84.3 417 25.9
HanXRQChr06g0183811 Helianthus annuus HOM05D004189 ORTHO05D004092 2.5e-14 84.3 268 32.5
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 2.5e-14 84.3 531 28.4
BcaC01g06182 Brassica carinata HOM05D004189 ORTHO05D004092 5.6e-14 83.2 264 35.6
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 5.6e-14 83.2 385 29.1
A03p15730 Brassica napus HOM05D004189 ORTHO05D004092 1.3e-13 82.0 268 34.7
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 2.8e-13 80.9 362 29.6
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 3.7e-13 80.5 347 30.5
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 6.2e-13 79.7 535 28.0
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 1.1e-12 79.0 222 39.2
AL7G27520 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 1.8e-12 78.2 270 34.8
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 2.4e-12 77.8 275 32.7
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 4.0e-12 77.0 224 35.3
BcaB01g04200 Brassica carinata HOM05D004189 ORTHO05D004092 6.9e-12 76.3 275 31.6
Aa31LG7G12260 Aethionema arabicum HOM05D004189 ORTHO05D004092 9.0e-12 75.9 154 39.6
arahy.Tifrunner.gnm1.ann1.UM41MD Arachis hypogaea HOM05D004189 ORTHO05D004092 5.8e-11 73.2 117 47.0
Thhalv10015427m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 1.3e-10 72.0 263 30.4
BolC3t14234H Brassica oleracea HOM05D004189 ORTHO05D004092 4.9e-10 70.1 258 33.7
CsaV3_3G049950 Cucumis sativus L. HOM05D004189 ORTHO05D004092 4.9e-10 70.1 230 32.2
FAN06G3443 Fragaria x ananassa HOM05D013146 ORTHO05D004092 6.5e-10 69.7 151 36.4
Ca_25745_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 8.4e-10 69.3 265 32.1
PSO478G2886 Papaver somniferum HOM05D064671 ORTHO05D004092 1.4e-09 68.6 299 30.4
FvH4_7g29480 Fragaria vesca HOM05D013146 ORTHO05D004092 2.5e-09 67.8 151 35.8
CiPaw.03G106300 Carya illinoinensis HOM05D004189 ORTHO05D004092 5.5e-09 66.6 426 26.1
SGA_v2.0_scaffold10G05341 Striga asiatica HOM05D026728 ORTHO05D004092 5.5e-09 66.6 401 24.4
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 9.3e-09 65.9 249 30.9
Ah.07g207200 Amaranthus hybridus HOM05D032681 ORTHO05D004092 6.0e-08 63.2 238 32.4
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 7.9e-08 62.8 437 27.0
Carub.0008s1241 Capsella rubella HOM05D004189 ORTHO05D004092 1.0e-07 62.4 185 36.8
PSO782G3516 Papaver somniferum HOM05D064671 ORTHO05D004092 1.0e-07 62.4 315 27.9
Sed0019460 Sechium edule HOM05D004189 ORTHO05D004092 1.0e-07 62.4 421 24.5
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 1.3e-07 62.0 204 30.4
Lalb_Chr21g0305031 Lupinus albus HOM05D004189 ORTHO05D004092 1.8e-07 61.6 175 33.7
Medtr1g100623 Medicago truncatula HOM05D004189 ORTHO05D004092 1.8e-07 61.6 121 38.8
Phvul.004G117100 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 2.3e-07 61.2 198 32.3
Nitab4.5_0003242g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 3.0e-07 60.8 125 37.6
C03p18370 Brassica napus HOM05D004189 ORTHO05D004092 6.7e-07 59.7 247 31.2
Sp6g14580 Schrenkiella parvula HOM05D004189 ORTHO05D004092 8.7e-07 59.3 225 29.8
Nitab4.5_0002721g0060 Nicotiana tabacum HOM05D004189 ORTHO05D004092 2.5e-06 57.8 148 34.5
Glyma.16G183700 Glycine max HOM05D004189 ORTHO05D004092 4.3e-06 57.0 170 32.4
Glyma.16G192000 Glycine max HOM05D004189 ORTHO05D004092 4.3e-06 57.0 148 35.8
Sopen01g005170 Solanum pennellii HOM05D000155 ORTHO05D000022 5.7e-06 56.6 116 32.8


User provided reference genes

Program Settings