Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.F00838 Erythranthe guttata HOM05D005094 ORTHO05D006271 9.0e-66 253.4 128 100.0
Migut.N02437 Erythranthe guttata HOM05D005094 ORTHO05D006271 2.8e-43 178.7 97 94.8
MSTRG.12396 Avicennia marina HOM05D005094 ORTHO05D006271 1.0e-37 160.2 97 84.5
Solyc06g073950.3 Solanum lycopersicum HOM05D005094 ORTHO05D006271 2.6e-33 145.6 97 77.3
Sopen06g030350 Solanum pennellii HOM05D005094 ORTHO05D006271 2.6e-33 145.6 97 77.3
Nitab4.5_0007630g0010 Nicotiana tabacum HOM05D005094 ORTHO05D006271 7.7e-33 144.1 97 77.3
unitig_8.g3656 Utricularia gibba HOM05D005094 ORTHO05D006271 1.3e-32 143.3 97 76.3
Oeu058195.3 Olea europaea HOM05D005094 ORTHO05D006271 1.7e-32 142.9 97 79.4
unitig_22.g5683 Utricularia gibba HOM05D005094 ORTHO05D006271 2.2e-32 142.5 97 76.3
Actinidia07282 Actinidia chinensis HOM05D005094 ORTHO05D006271 5.0e-32 141.4 80 86.2
Oeu048825.1 Olea europaea HOM05D005094 ORTHO05D006271 5.0e-32 141.4 97 76.3
SGA_v2.0_scaffold268G46196 Striga asiatica HOM05D005094 ORTHO05D006271 5.0e-32 141.4 97 76.3
PGSC0003DMG400002984 Solanum tuberosum HOM05D005094 ORTHO05D006271 8.5e-32 140.6 97 76.3
Glyma.12G189400 Glycine max HOM05D005094 ORTHO05D006271 1.1e-31 140.2 81 82.7
Lj3g0019788 Lotus japonicus HOM05D005094 ORTHO05D006271 1.1e-31 140.2 83 81.9
GSVIVG01037590001 Vitis vinifera HOM05D005094 ORTHO05D006271 1.9e-31 139.4 80 83.8
Hma1.2p1_0101F.1_g049550 Hydrangea macrophylla HOM05D005094 ORTHO05D006271 2.5e-31 139.0 80 83.8
Ca_01630_v3 Cicer arietinum L. HOM05D005094 ORTHO05D006271 3.2e-31 138.7 80 85.0
Solyc11g071930.2 Solanum lycopersicum HOM05D005094 ORTHO05D006271 3.2e-31 138.7 97 75.3
Sopen11g029600 Solanum pennellii HOM05D005094 ORTHO05D006271 3.2e-31 138.7 97 75.3
Ciclev10029128m.g Citrus clementina HOM05D005094 ORTHO05D006271 4.2e-31 138.3 83 79.5
TAR636G3194 Trochodendron aralioides HOM05D005094 ORTHO05D006271 4.2e-31 138.3 77 88.3
arahy.Tifrunner.gnm1.ann1.23FIWR Arachis hypogaea HOM05D005094 ORTHO05D006271 5.5e-31 137.9 100 71.0
arahy.Tifrunner.gnm1.ann1.1B470G Arachis hypogaea HOM05D005094 ORTHO05D006271 7.2e-31 137.5 83 80.7
CAN.G689.3 Capsicum annuum HOM05D005094 ORTHO05D006271 7.2e-31 137.5 97 75.3
Dinv18848 Davidia involucrata HOM05D005094 ORTHO05D006271 9.4e-31 137.1 79 84.8
Glyma.13G312400 Glycine max HOM05D005094 ORTHO05D006271 9.4e-31 137.1 81 81.5
TAR633G0299 Trochodendron aralioides HOM05D005094 ORTHO05D006271 1.2e-30 136.7 77 87.0
vmacro14320 Vaccinium macrocarpon HOM05D005094 ORTHO05D006271 1.2e-30 136.7 80 81.2
PSO339G5010 Papaver somniferum HOM05D005094 ORTHO05D006271 1.6e-30 136.3 82 81.7
PSO384G0916 Papaver somniferum HOM05D005094 ORTHO05D006271 1.6e-30 136.3 82 81.7
Peaxi162Scf00429g00211 Petunia axillaris HOM05D005094 ORTHO05D006271 2.1e-30 136.0 97 73.2
Phvul.005G118800 Phaseolus vulgaris HOM05D005094 ORTHO05D006271 2.7e-30 135.6 81 81.5
CiPaw.14G093900 Carya illinoinensis HOM05D005094 ORTHO05D006271 3.6e-30 135.2 79 82.3
Gohir.A05G077850 Gossypium hirsutum HOM05D005094 ORTHO05D006271 6.1e-30 134.4 80 81.2
Gohir.D05G080650 Gossypium hirsutum HOM05D005094 ORTHO05D006271 6.1e-30 134.4 80 81.2
Gorai.009G082400 Gossypium raimondii HOM05D005094 ORTHO05D006271 6.1e-30 134.4 80 81.2
HanXRQChr13g0420191 Helianthus annuus HOM05D005094 ORTHO05D006271 6.1e-30 134.4 83 79.5
Lsat_1_v5_gn_3_114781 Lactuca sativa HOM05D005094 ORTHO05D006271 7.9e-30 134.0 83 80.7
MD11G1174000 Malus domestica HOM05D005094 ORTHO05D006271 1.0e-29 133.7 77 83.1
CSS0045075 Camellia sinensis var. sinensis HOM05D005094 ORTHO05D006271 1.4e-29 133.3 81 79.0
Eucgr.J00577 Eucalyptus grandis HOM05D005094 ORTHO05D006271 1.4e-29 133.3 77 84.4
HanXRQChr03g0091071 Helianthus annuus HOM05D005094 ORTHO05D006271 1.4e-29 133.3 79 82.3
Sed0013610 Sechium edule HOM05D005094 ORTHO05D006271 1.4e-29 133.3 82 79.3
Hund18798 Selenicereus undatus HOM05D005094 ORTHO05D006271 1.4e-29 133.3 78 83.3
MELO3C015043.2 Cucumis melo HOM05D005094 ORTHO05D006271 1.8e-29 132.9 82 80.5
Duzib170G0543 Durio zibethinus HOM05D005094 ORTHO05D006271 1.8e-29 132.9 80 81.2
PGR119G0969 Punica granatum HOM05D005094 ORTHO05D006271 1.8e-29 132.9 80 80.0
QL01p019499 Quercus lobata HOM05D005094 ORTHO05D006271 1.8e-29 132.9 83 77.1
Atru.chr3.3099 Acer truncatum HOM05D005094 ORTHO05D006271 2.3e-29 132.5 78 82.1
Aqoxy1G00640 Aquilegia oxysepala HOM05D005094 ORTHO05D006271 2.3e-29 132.5 76 85.5
arahy.Tifrunner.gnm1.ann1.S09H8L Arachis hypogaea HOM05D005094 ORTHO05D006271 2.3e-29 132.5 81 77.8
Lalb_Chr24g0393351 Lupinus albus HOM05D005094 ORTHO05D006271 2.3e-29 132.5 101 70.3
Prupe.6G145600 Prunus persica HOM05D005094 ORTHO05D006271 2.3e-29 132.5 77 81.8
CAN.G1463.12 Capsicum annuum HOM05D005094 ORTHO05D006271 3.0e-29 132.1 98 71.4
Nitab4.5_0010585g0010 Nicotiana tabacum HOM05D005094 ORTHO05D006271 3.0e-29 132.1 97 69.1
Potri.001G215800 Populus trichocarpa HOM05D005094 ORTHO05D006271 3.0e-29 132.1 83 75.9
CsaV3_1G043920 Cucumis sativus L. HOM05D005094 ORTHO05D006271 3.9e-29 131.7 82 79.3
Medtr2g087520 Medicago truncatula HOM05D005094 ORTHO05D006271 3.9e-29 131.7 82 76.8
arahy.Tifrunner.gnm1.ann1.5LCH1K Arachis hypogaea HOM05D005094 ORTHO05D006271 6.7e-29 131.0 81 76.5
CANSAT54G2440 Cannabis sativa HOM05D005094 ORTHO05D006271 6.7e-29 131.0 80 78.8
Manes.04G062000 Manihot esculenta HOM05D005094 ORTHO05D006271 6.7e-29 131.0 83 77.1
Psat5g261040 Pisum sativum HOM05D005094 ORTHO05D006271 6.7e-29 131.0 81 77.8
EL10Ac7g16288 Beta vulgaris HOM05D005094 ORTHO05D006271 8.8e-29 130.6 90 72.2
ClCG03G012000 Citrullus lanatus HOM05D005094 ORTHO05D006271 8.8e-29 130.6 78 83.3
DCAR_014060 Daucus carota HOM05D005094 ORTHO05D006271 8.8e-29 130.6 82 74.4
ECA240G4521 Erigeron canadensis HOM05D005094 ORTHO05D006271 8.8e-29 130.6 80 78.8
FAN08G3356 Fragaria x ananassa HOM05D005925 ORTHO05D007270 8.8e-29 130.6 80 76.2
Rhsim01G0200800 Rhododendron simsii HOM05D005094 ORTHO05D006271 8.8e-29 130.6 94 70.2
VMungo1080G0255 Vigna mungo HOM05D005094 ORTHO05D006271 8.8e-29 130.6 79 79.7
RcHm_v2.0_Chr7g0218521 Rosa chinensis HOM05D005094 ORTHO05D006271 1.1e-28 130.2 77 79.2
THA.LOC104810936 Tarenaya hassleriana HOM05D005094 ORTHO05D006271 1.1e-28 130.2 88 72.7
Lj2A957G10 Lonicera japonica HOM05D005094 ORTHO05D006271 1.5e-28 129.8 80 77.5
Thecc.09G271300 Theobroma cacao HOM05D005094 ORTHO05D006271 1.5e-28 129.8 79 81.0
Sc21g0006770 Simmondsia chinensis HOM05D005094 ORTHO05D006271 2.0e-28 129.4 79 78.5
CDE06G0118 Ceratophyllum demersum HOM05D005094 ORTHO05D006271 2.6e-28 129.0 77 80.5
FvH4_5g27361 Fragaria vesca HOM05D005094 ORTHO05D006271 2.6e-28 129.0 77 77.9
FAN04G2258 Fragaria x ananassa HOM05D005925 ORTHO05D007270 2.6e-28 129.0 80 75.0
FAN18G1621 Fragaria x ananassa HOM05D005925 ORTHO05D007270 2.6e-28 129.0 77 77.9
AUR62020223 Chenopodium quinoa HOM05D005094 ORTHO05D006271 4.4e-28 128.3 91 71.4
Cc01_g07820 Coffea canephora HOM05D005094 ORTHO05D006271 5.7e-28 127.9 97 70.1
Sabra16G0127800 Salix brachista HOM05D005094 ORTHO05D006271 5.7e-28 127.9 103 65.0
MBI06_g20956_MAGBIO Magnolia biondii HOM05D005094 ORTHO05D006271 7.4e-28 127.5 77 81.8
TWI79G0842 Tripterygium wilfordii HOM05D005094 ORTHO05D006271 7.4e-28 127.5 87 73.6
Aa31LG1G13330 Aethionema arabicum HOM05D005094 ORTHO05D006271 9.7e-28 127.1 87 71.3
COL.COLO4_25411 Corchorus olitorius HOM05D005094 ORTHO05D006271 9.7e-28 127.1 76 80.3
FAN13G1680 Fragaria x ananassa HOM05D005925 ORTHO05D007270 1.3e-27 126.7 83 72.3
Potri.009G016700 Populus trichocarpa HOM05D005094 ORTHO05D006271 1.7e-27 126.3 82 74.4
SalBow3G2633 Salvia bowleyana HOM05D005094 ORTHO05D006271 2.2e-27 125.9 71 85.9
Haze_23570 Corylus avellana HOM05D005094 ORTHO05D006271 6.3e-27 124.4 94 67.0
AL6G33050 Arabidopsis lyrata HOM05D005094 ORTHO05D006271 1.8e-26 122.9 85 70.6
AT5G22080 Arabidopsis thaliana HOM05D005094 ORTHO05D006271 1.8e-26 122.9 85 70.6
BcaB08g36455 Brassica carinata HOM05D005094 ORTHO05D006271 1.8e-26 122.9 85 70.6
BcaC04g19539 Brassica carinata HOM05D005094 ORTHO05D006271 1.8e-26 122.9 85 70.6
A10p18680 Brassica napus HOM05D005094 ORTHO05D006271 1.8e-26 122.9 85 70.6
BNapus_Darmor_BZH_scaffold_38p00890 Brassica napus HOM05D005094 ORTHO05D006271 1.8e-26 122.9 85 70.6
C09p54620 Brassica napus HOM05D005094 ORTHO05D006271 1.8e-26 122.9 85 70.6
BolC2t07135H Brassica oleracea HOM05D005094 ORTHO05D006271 1.8e-26 122.9 85 70.6
BolC9t58328H Brassica oleracea HOM05D005094 ORTHO05D006271 1.8e-26 122.9 85 70.6
BraA02t05635Z Brassica rapa HOM05D004977 ORTHO05D006454 1.8e-26 122.9 85 70.6
Pp3c14_160 Physcomitrium patens HOM05D005094 ORTHO05D006271 1.8e-26 122.9 79 72.2
Pp3c14_168 Physcomitrium patens HOM05D005094 ORTHO05D006271 1.8e-26 122.9 79 72.2
PGSC0003DMG400005935 Solanum tuberosum HOM05D005094 ORTHO05D006271 1.8e-26 122.9 111 59.5
Carub.0006s1972 Capsella rubella HOM05D005094 ORTHO05D006271 2.4e-26 122.5 85 70.6
Duzib168G1065 Durio zibethinus HOM05D005094 ORTHO05D006271 2.4e-26 122.5 77 77.9
Thhalv10014509m.g Eutrema salsugineum HOM05D005094 ORTHO05D006271 2.4e-26 122.5 85 70.6
Os03g0261500 Oryza sativa ssp. japonica HOM05D005094 ORTHO05D006271 2.4e-26 122.5 92 68.5
HPP92_002190 Vanilla planifolia HOM05D005094 ORTHO05D006271 3.1e-26 122.1 81 74.1
SMO361G0106 Selaginella moellendorffii HOM05D005094 ORTHO05D006271 5.3e-26 121.3 76 75.0
Sp6g23110 Schrenkiella parvula HOM05D005094 ORTHO05D006271 9.1e-26 120.6 85 68.2
Zm00001eb011420 Zea mays HOM05D005094 ORTHO05D006271 9.1e-26 120.6 81 74.1
CARHR191450 Cardamine hirsuta HOM05D005094 ORTHO05D006271 1.5e-25 119.8 77 72.7
AagrBONN_evm.TU.Sc2ySwM_362.382 Anthoceros agrestis HOM05D005094 ORTHO05D006271 2.6e-25 119.0 79 70.9
BraA10t43948Z Brassica rapa HOM05D005094 ORTHO05D006271 3.5e-25 118.6 74 75.7
SHI25260 Sapria himalayana HOM05D005094 ORTHO05D006271 5.9e-25 117.9 80 73.8
Mapoly0009s0161 Marchantia polymorpha HOM05D005094 ORTHO05D006271 1.3e-24 116.7 97 62.9
SEGI_09358 Sequoiadendron giganteum HOM05D005094 ORTHO05D006271 1.2e-22 110.2 76 71.1
CDE08G0906 Ceratophyllum demersum HOM05D005094 ORTHO05D006271 3.6e-22 108.6 69 75.4
Oeu058196.1 Olea europaea HOM05D005094 ORTHO05D006271 3.6e-22 108.6 53 92.5
BcaC03g13856 Brassica carinata HOM05D005094 ORTHO05D006271 8.0e-22 107.5 82 64.6
CBR_g39052 Chara braunii HOM05D005094 ORTHO05D006271 8.0e-22 107.5 75 68.0
MD03G1156500 Malus domestica HOM05D005094 ORTHO05D006271 2.3e-21 105.9 79 72.2
MELO3C000325.2 Cucumis melo HOM05D005094 ORTHO05D006271 1.3e-19 100.1 68 73.5
MCO03G485 Micromonas commoda HOM05D005094 ORTHO05D006271 6.3e-19 97.8 76 60.5
ATR0665G096 Amborella trichopoda HOM05D005094 ORTHO05D006271 8.2e-19 97.4 53 81.1
Nn2g14337 Nelumbo nucifera HOM05D005094 ORTHO05D006271 8.2e-19 97.4 53 83.0
Nn6g34655 Nelumbo nucifera HOM05D005094 ORTHO05D006271 1.1e-18 97.1 53 81.1
BcaB01g04743 Brassica carinata HOM05D005094 ORTHO05D006271 4.1e-18 95.1 103 51.5
Nitab4.5_0005360g0020 Nicotiana tabacum HOM05D005094 ORTHO05D006271 1.6e-17 93.2 74 64.9
Cre12.g557950 Chlamydomonas reinhardtii HOM05D005094 ORTHO05D006271 2.0e-17 92.8 73 61.6
PRCOL_00005229 Prasinoderma coloniale HOM05D005094 ORTHO05D006271 2.5e-15 85.9 74 50.0
SGA_v2.0_scaffold16G07505 Striga asiatica HOM05D005094 ORTHO05D006271 4.7e-14 81.6 109 50.5
AUR62001557 Chenopodium quinoa HOM05D005094 ORTHO05D006271 4.1e-10 68.6 77 50.6
CBR_g58400 Chara braunii HOM05D004490 ORTHO05D005353 2.5e-07 59.3 89 34.8
SalBow1G6353 Salvia bowleyana HOM05D005094 ORTHO05D006271 1.2e-06 57.0 63 52.4
AagrBONN_evm.TU.Sc2ySwM_228.3521 Anthoceros agrestis HOM05D004490 ORTHO05D005353 1.6e-06 56.6 79 41.8
AL2G20400 Arabidopsis lyrata HOM05D004490 ORTHO05D005353 2.1e-06 56.2 63 42.9
AT1G65280 Arabidopsis thaliana HOM05D004490 ORTHO05D005353 2.1e-06 56.2 63 42.9
BcaB01g01408 Brassica carinata HOM05D004490 ORTHO05D005353 2.1e-06 56.2 63 42.9
Carub.0002s1095 Capsella rubella HOM05D004490 ORTHO05D005353 2.1e-06 56.2 63 42.9
Pp3c14_7350 Physcomitrium patens HOM05D004490 ORTHO05D005353 2.1e-06 56.2 66 47.0
BcaC04g20957 Brassica carinata HOM05D004490 ORTHO05D005353 2.7e-06 55.8 63 42.9
A09p29500 Brassica napus HOM05D004490 ORTHO05D005353 2.7e-06 55.8 63 42.9
BolC9t56586H Brassica oleracea HOM05D004490 ORTHO05D005353 2.7e-06 55.8 63 42.9
BraA09t38516Z Brassica rapa HOM05D004490 ORTHO05D005353 2.7e-06 55.8 63 42.9
Cfa018184 Carpinus fangiana HOM05D004490 ORTHO05D005353 2.7e-06 55.8 63 44.4
Zm00001eb427930 Zea mays HOM05D004490 ORTHO05D005353 2.7e-06 55.8 63 46.0
Mapoly0003s0077 Marchantia polymorpha HOM05D004490 ORTHO05D005353 3.6e-06 55.5 66 42.4
TWI63G0531 Tripterygium wilfordii HOM05D004490 ORTHO05D005353 3.6e-06 55.5 59 42.4
CARHR056930 Cardamine hirsuta HOM05D004490 ORTHO05D005353 4.7e-06 55.1 63 41.3
QL02p033840 Quercus lobata HOM05D004490 ORTHO05D005353 4.7e-06 55.1 60 43.3
THA.LOC104816311 Tarenaya hassleriana HOM05D004490 ORTHO05D005353 4.7e-06 55.1 63 41.3
Eucgr.F04124 Eucalyptus grandis HOM05D004490 ORTHO05D005353 6.1e-06 54.7 59 42.4
Thhalv10028527m.g Eutrema salsugineum HOM05D004490 ORTHO05D005353 6.1e-06 54.7 63 41.3
Os01g0521500 Oryza sativa ssp. japonica HOM05D004490 ORTHO05D005353 6.1e-06 54.7 63 42.9
arahy.Tifrunner.gnm1.ann1.2Y7GNB Arachis hypogaea HOM05D004490 ORTHO05D005353 8.0e-06 54.3 60 41.7
arahy.Tifrunner.gnm1.ann1.90XUFN Arachis hypogaea HOM05D004490 ORTHO05D005353 8.0e-06 54.3 60 41.7
Duzib168G1131 Durio zibethinus HOM05D001406 ORTHO05D002467 8.0e-06 54.3 99 36.4
FvH4_3g44932 Fragaria vesca HOM05D004490 ORTHO05D005353 8.0e-06 54.3 40 55.0
Glyma.20G175700 Glycine max HOM05D004490 ORTHO05D005353 8.0e-06 54.3 60 41.7
Rhsim01G0073200 Rhododendron simsii HOM05D001406 ORTHO05D002467 8.0e-06 54.3 95 34.7
Rhsim01G0073900 Rhododendron simsii HOM05D001406 ORTHO05D002467 8.0e-06 54.3 95 34.7
Sed0010515 Sechium edule HOM05D004490 ORTHO05D005353 8.0e-06 54.3 60 41.7
GSVIVG01034483001 Vitis vinifera HOM05D004490 ORTHO05D005353 8.0e-06 54.3 59 42.4


User provided reference genes

Program Settings