Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.F00664 Erythranthe guttata HOM05D004762 ORTHO05D005972 4.6e-269 930.6 465 100.0
SalBow6G6782 Salvia bowleyana HOM05D004762 ORTHO05D005972 2.5e-235 818.5 463 86.4
CANSAT56G2662 Cannabis sativa HOM05D004762 ORTHO05D005972 1.5e-211 739.6 455 78.5
PGSC0003DMG400019183 Solanum tuberosum HOM05D004762 ORTHO05D005972 9.7e-211 736.9 458 78.2
Solyc10g076800.2 Solanum lycopersicum HOM05D004762 ORTHO05D005972 3.7e-210 734.9 458 77.9
Cc08_g07190 Coffea canephora HOM05D004762 ORTHO05D005972 5.9e-208 727.6 468 77.1
Ciclev10031450m.g Citrus clementina HOM05D004762 ORTHO05D005972 5.0e-207 724.5 465 75.3
CAN.G1087.1 Capsicum annuum HOM05D004762 ORTHO05D005972 8.5e-207 723.8 457 76.6
QL06p052059 Quercus lobata HOM05D004762 ORTHO05D005972 8.5e-207 723.8 449 78.6
Peaxi162Scf00284g00722 Petunia axillaris HOM05D004762 ORTHO05D005972 2.5e-206 722.2 460 76.1
Hma1.2p1_0145F.1_g065350 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 4.2e-206 721.5 452 77.2
Atru.BG.273.p Acer truncatum HOM05D004762 ORTHO05D005972 5.5e-206 721.1 424 80.9
CAN.G1305.22 Capsicum annuum HOM05D004762 ORTHO05D005972 1.6e-205 719.5 457 75.9
CiPaw.01G300200 Carya illinoinensis HOM05D004762 ORTHO05D005972 2.1e-205 719.2 455 76.5
TAR636G3670 Trochodendron aralioides HOM05D004762 ORTHO05D005972 6.1e-205 717.6 460 75.7
Oeu043882.1 Olea europaea HOM05D004762 ORTHO05D005972 1.0e-204 716.8 514 71.2
Nitab4.5_0000797g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.4e-204 716.5 462 75.1
CSS0039953 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 3.0e-204 715.3 456 76.8
CSS0044129 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 3.0e-204 715.3 456 76.8
Nitab4.5_0013304g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 3.0e-204 715.3 462 75.1
Rhsim03G0145100 Rhododendron simsii HOM05D004762 ORTHO05D005972 1.5e-203 713.0 456 75.2
RcHm_v2.0_Chr1g0370541 Rosa chinensis HOM05D004762 ORTHO05D005972 1.5e-203 713.0 457 75.3
Manes.07G131500 Manihot esculenta HOM05D004762 ORTHO05D005972 2.0e-203 712.6 462 75.3
GSVIVG01032791001 Vitis vinifera HOM05D004762 ORTHO05D005972 2.0e-203 712.6 449 76.6
FvH4_7g24680 Fragaria vesca HOM05D004762 ORTHO05D005972 2.6e-203 712.2 463 73.9
TWI53G2041 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 2.6e-203 712.2 453 75.5
CsaV3_5G010300 Cucumis sativus L. HOM05D004762 ORTHO05D005972 4.4e-203 711.4 453 76.8
Potri.012G095500 Populus trichocarpa HOM05D004762 ORTHO05D005972 4.4e-203 711.4 464 74.8
Oeu011273.2 Olea europaea HOM05D004762 ORTHO05D005972 5.7e-203 711.1 549 66.5
Duzib106G1587 Durio zibethinus HOM05D004762 ORTHO05D005972 1.3e-202 709.9 453 75.5
Thecc.10G014000 Theobroma cacao HOM05D004762 ORTHO05D005972 1.1e-201 706.8 461 75.3
Gorai.013G017200 Gossypium raimondii HOM05D004762 ORTHO05D005972 2.4e-201 705.7 458 75.5
MD01G1154800 Malus domestica HOM05D004762 ORTHO05D005972 2.4e-201 705.7 461 75.3
Lj8A64T49 Lonicera japonica HOM05D004762 ORTHO05D005972 7.0e-201 704.1 451 76.3
Sed0015827 Sechium edule HOM05D004762 ORTHO05D005972 7.0e-201 704.1 455 74.9
FAN10G2322 Fragaria x ananassa HOM05D004762 ORTHO05D005972 1.2e-200 703.4 463 73.0
COL.COLO4_25767 Corchorus olitorius HOM05D004762 ORTHO05D005972 2.7e-200 702.2 454 75.1
Eucgr.G03076 Eucalyptus grandis HOM05D004762 ORTHO05D005972 3.5e-200 701.8 460 74.3
Lalb_Chr04g0254441 Lupinus albus HOM05D004762 ORTHO05D005972 4.5e-200 701.4 461 73.8
Gohir.D13G015700 Gossypium hirsutum HOM05D004762 ORTHO05D005972 5.9e-200 701.0 454 75.6
TWI09G1175 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 5.9e-200 701.0 450 75.3
MD07G1223900 Malus domestica HOM05D004762 ORTHO05D005972 5.0e-199 698.0 449 75.7
FAN06G2944 Fragaria x ananassa HOM05D004762 ORTHO05D005972 8.5e-199 697.2 492 69.7
Cfa001301 Carpinus fangiana HOM05D004762 ORTHO05D005972 1.1e-198 696.8 465 73.8
COL.COLO4_23625 Corchorus olitorius HOM05D004762 ORTHO05D005972 1.1e-198 696.8 454 74.7
Haze_17244 Corylus avellana HOM05D004762 ORTHO05D005972 1.5e-198 696.4 458 74.7
Psat4g160680 Pisum sativum HOM05D004762 ORTHO05D005972 1.5e-198 696.4 465 72.5
EL10Ac2g04854 Beta vulgaris HOM05D004762 ORTHO05D005972 2.5e-198 695.7 458 72.7
Prupe.2G252400 Prunus persica HOM05D004762 ORTHO05D005972 4.2e-198 694.9 449 75.7
Sc10g0002460 Simmondsia chinensis HOM05D004762 ORTHO05D005972 5.5e-198 694.5 449 75.3
Medtr8g027750 Medicago truncatula HOM05D004762 ORTHO05D005972 7.2e-198 694.1 459 73.6
vmacro06958 Vaccinium macrocarpon HOM05D004762 ORTHO05D005972 1.6e-197 693.0 496 70.2
AUR62012271 Chenopodium quinoa HOM05D004762 ORTHO05D005972 2.1e-197 692.6 463 72.6
AT2G40190 Arabidopsis thaliana HOM05D004762 ORTHO05D005972 2.7e-197 692.2 456 73.2
HanXRQChr14g0459541 Helianthus annuus HOM05D004762 ORTHO05D005972 8.0e-197 690.6 451 74.1
arahy.Tifrunner.gnm1.ann1.BGVI4S Arachis hypogaea HOM05D004762 ORTHO05D005972 1.4e-196 689.9 452 74.3
ClCG07G004360 Citrullus lanatus HOM05D004762 ORTHO05D005972 1.4e-196 689.9 486 71.0
Glyma.07G056300 Glycine max HOM05D004762 ORTHO05D005972 1.4e-196 689.9 459 73.2
Phvul.010G113600 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 1.8e-196 689.5 459 73.6
DCAR_007786 Daucus carota HOM05D004762 ORTHO05D005972 2.3e-196 689.1 436 77.1
Nn1g09364 Nelumbo nucifera HOM05D004762 ORTHO05D005972 2.3e-196 689.1 439 75.6
Glyma.16G025200 Glycine max HOM05D004762 ORTHO05D005972 6.8e-196 687.6 456 73.7
ECA238G4598 Erigeron canadensis HOM05D001399 ORTHO05D001670 1.2e-195 686.8 423 77.8
AL108U10020 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 2.0e-195 686.0 449 73.9
Carub.0004s2241 Capsella rubella HOM05D004762 ORTHO05D005972 2.0e-195 686.0 449 73.5
Aqoxy7G00585 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 4.4e-195 684.9 459 71.7
FAN01G2296 Fragaria x ananassa HOM05D004762 ORTHO05D005972 4.4e-195 684.9 509 66.8
Lj3g0010190 Lotus japonicus HOM05D004762 ORTHO05D005972 4.4e-195 684.9 460 72.6
Thhalv10016619m.g Eutrema salsugineum HOM05D004762 ORTHO05D005972 1.3e-194 683.3 455 72.5
VMungo0331G1989 Vigna mungo HOM05D004762 ORTHO05D005972 1.3e-194 683.3 459 73.2
arahy.Tifrunner.gnm1.ann1.YY9F0M Arachis hypogaea HOM05D004762 ORTHO05D005972 1.7e-194 682.9 478 70.7
Ca_23540_v3 Cicer arietinum L. HOM05D004762 ORTHO05D005972 1.1e-193 680.2 488 69.5
Sp4g22540 Schrenkiella parvula HOM05D004762 ORTHO05D005972 2.4e-193 679.1 448 72.5
arahy.Tifrunner.gnm1.ann1.NBD53L Arachis hypogaea HOM05D004762 ORTHO05D005972 7.0e-193 677.6 465 71.6
BcaB02g09041 Brassica carinata HOM05D004762 ORTHO05D005972 4.5e-192 674.9 429 73.4
SGA_v2.0_scaffold44G16679 Striga asiatica HOM05D004762 ORTHO05D005972 1.0e-191 673.7 383 84.6
FAN03G0495 Fragaria x ananassa HOM05D004762 ORTHO05D005972 1.9e-190 669.5 482 68.7
A05p06240 Brassica napus HOM05D004762 ORTHO05D005972 2.5e-190 669.1 446 71.1
Lsat_1_v5_gn_2_124101 Lactuca sativa HOM05D004762 ORTHO05D005972 2.5e-190 669.1 459 72.1
Gohir.A13G014500 Gossypium hirsutum HOM05D004762 ORTHO05D005972 3.3e-190 668.7 450 72.9
Aa31LG5G19380 Aethionema arabicum HOM05D004762 ORTHO05D005972 4.2e-190 668.3 452 70.8
BcaC02g12138 Brassica carinata HOM05D004762 ORTHO05D005972 4.2e-190 668.3 455 70.1
BraA05t19588Z Brassica rapa HOM05D004762 ORTHO05D005972 4.2e-190 668.3 446 71.1
C04p07190 Brassica napus HOM05D004762 ORTHO05D005972 9.5e-190 667.2 455 69.9
Hma1.2p1_0523F.1_g172170 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 9.5e-190 667.2 452 72.1
PSO017G1441 Papaver somniferum HOM05D004762 ORTHO05D005972 4.7e-189 664.8 453 69.8
Sabra15G0114600 Salix brachista HOM05D004762 ORTHO05D005972 4.7e-189 664.8 602 58.5
BolC4t22343H Brassica oleracea HOM05D004762 ORTHO05D005972 6.1e-189 664.5 456 70.0
PSO675G7276 Papaver somniferum HOM05D004762 ORTHO05D005972 1.4e-188 663.3 449 71.0
AL4G37920 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 4.0e-188 661.8 449 72.2
PSO478G3676 Papaver somniferum HOM05D004762 ORTHO05D005972 6.8e-188 661.0 457 70.0
PGR142G3177 Punica granatum HOM05D004762 ORTHO05D005972 1.4e-185 653.3 457 69.4
PSO017G5956 Papaver somniferum HOM05D004762 ORTHO05D005972 2.3e-183 646.0 471 67.1
CDE02G4330 Ceratophyllum demersum HOM05D004762 ORTHO05D005972 1.4e-180 636.7 459 66.9
ATR0580G181 Amborella trichopoda HOM05D004762 ORTHO05D005972 1.8e-180 636.3 457 68.5
Zm00001eb030250 Zea mays HOM05D004762 ORTHO05D005972 3.1e-180 635.6 449 67.0
HPP92_020134 Vanilla planifolia HOM05D004762 ORTHO05D005972 1.0e-175 620.5 423 70.0
DCAR_024818 Daucus carota HOM05D004762 ORTHO05D005972 3.3e-174 615.5 455 65.9
MELO3C018365.2 Cucumis melo HOM05D004762 ORTHO05D005972 1.3e-170 603.6 371 78.4
AUR62022908 Chenopodium quinoa HOM05D004762 ORTHO05D005972 3.0e-167 592.4 378 75.7
SGA_v2.0_scaffold60G20982 Striga asiatica HOM05D004762 ORTHO05D005972 8.6e-167 590.9 481 65.1
Hma1.2p1_2705F.1_g327160 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 2.3e-164 582.8 362 78.5
unitig_748.g8448 Utricularia gibba HOM05D004762 ORTHO05D005972 6.4e-162 574.7 451 65.0
TPR.G15355 Trifolium pratense HOM05D004762 ORTHO05D005972 5.1e-159 565.1 364 75.3
Actinidia33916 Actinidia chinensis HOM05D004762 ORTHO05D005972 1.0e-151 540.8 390 70.3
Pp3c14_26870 Physcomitrium patens HOM05D004762 ORTHO05D005972 1.0e-151 540.8 452 60.4
Mapoly0096s0017 Marchantia polymorpha HOM05D004762 ORTHO05D005972 2.3e-151 539.7 454 61.0
AagrBONN_evm.TU.Sc2ySwM_228.3247 Anthoceros agrestis HOM05D004762 ORTHO05D005972 7.3e-150 534.6 455 59.1
SMO358G0322 Selaginella moellendorffii HOM05D004762 ORTHO05D005972 6.2e-141 505.0 447 58.8
Dinv21748 Davidia involucrata HOM05D004762 ORTHO05D005972 3.4e-131 472.6 277 80.5
CBR_g12682 Chara braunii HOM05D004762 ORTHO05D005972 1.3e-130 470.7 443 55.8
BcaC02g12136 Brassica carinata HOM05D004762 ORTHO05D005972 2.5e-129 466.5 378 63.8
Sopen10g028440 Solanum pennellii HOM05D004762 ORTHO05D005972 5.3e-124 448.7 279 76.3
Hund15913 Selenicereus undatus HOM05D004762 ORTHO05D005972 2.0e-123 446.8 453 53.2
CARHR135230 Cardamine hirsuta HOM05D004762 ORTHO05D005972 1.0e-119 434.5 273 74.0
MCO10G125 Micromonas commoda HOM05D004762 ORTHO05D005972 1.4e-108 397.5 519 44.7
PSO017G2836 Papaver somniferum HOM05D004762 ORTHO05D005972 1.1e-102 377.9 244 70.5
Os12g0583000 Oryza sativa ssp. japonica HOM05D004762 ORTHO05D005972 7.0e-100 368.6 256 69.5
PRCOL_00001728 Prasinoderma coloniale HOM05D004762 ORTHO05D005972 2.2e-98 363.6 427 45.9
Gohir.D06G056233 Gossypium hirsutum HOM05D004762 ORTHO05D005972 4.1e-92 342.8 253 70.0
Cre01.g058521 Chlamydomonas reinhardtii HOM05D004762 ORTHO05D005972 1.5e-89 334.3 540 40.0
Haze_26859 Corylus avellana HOM05D004762 ORTHO05D005972 2.6e-86 323.6 457 38.9
Gorai.004G138800 Gossypium raimondii HOM05D004762 ORTHO05D005972 2.5e-81 307.0 258 62.8
Gohir.D08G135600 Gossypium hirsutum HOM05D004762 ORTHO05D005972 7.2e-81 305.4 247 64.4
BraA04t18511Z Brassica rapa HOM05D004762 ORTHO05D001193 6.8e-71 272.3 239 59.8
Cpa.g.sc1441.3 Carica papaya HOM05D004762 ORTHO05D005972 7.3e-65 252.3 163 71.2
BcaB01g03555 Brassica carinata HOM05D004762 ORTHO05D005972 6.8e-63 245.7 203 63.1
Potri.015G093000 Populus trichocarpa HOM05D004762 ORTHO05D005972 4.4e-62 243.0 184 66.8
Aqoxy4G02491 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 3.2e-60 236.9 202 61.9
A04p29970 Brassica napus HOM05D004762 ORTHO05D001193 7.3e-57 225.7 239 52.7
TAR633G0702 Trochodendron aralioides HOM05D003030 ORTHO05D003610 4.4e-54 216.5 150 72.7
Aqoxy4G02490 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 2.2e-53 214.2 162 64.2
Nitab4.5_0006049g0030 Nicotiana tabacum HOM05D004762 ORTHO05D005972 2.1e-43 181.0 119 73.9
Phvul.010G113266 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 4.3e-41 173.3 120 69.2
Aqoxy4G02489 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 7.6e-38 162.5 105 77.1
QL11p009420 Quercus lobata HOM05D004762 ORTHO05D005972 6.4e-37 159.5 107 77.6
SEGI_20752 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 1.1e-36 158.7 111 68.5
BcaB06g29139 Brassica carinata HOM05D004762 ORTHO05D005972 3.9e-34 150.2 106 69.8
Hma1.2p1_0812F.1_g222370 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 1.1e-33 148.7 340 32.1
EL10Ac2g03328 Beta vulgaris HOM05D004762 ORTHO05D005972 2.5e-33 147.5 105 70.5
TPR.G10834 Trifolium pratense HOM05D004762 ORTHO05D005972 2.0e-30 137.9 95 66.3
EL10Ac6g13956 Beta vulgaris HOM05D004762 ORTHO05D005972 1.3e-29 135.2 90 72.2
Nitab4.5_0001180g0090 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.3e-29 135.2 97 62.9
BcaC01g05421 Brassica carinata HOM05D002909 ORTHO05D000493 4.2e-20 103.6 71 74.6
C03p26800 Brassica napus HOM05D000223 ORTHO05D001193 4.2e-20 103.6 71 74.6
BolC3t15065H Brassica oleracea HOM05D000223 ORTHO05D001193 4.2e-20 103.6 71 74.6
EL10Ac6g14685 Beta vulgaris HOM05D004762 ORTHO05D005972 9.3e-20 102.4 107 50.5
arahy.Tifrunner.gnm1.ann1.38D1EG Arachis hypogaea HOM05D005637 ORTHO05D006983 3.9e-18 97.1 65 69.2
arahy.Tifrunner.gnm1.ann1.SGI312 Arachis hypogaea HOM05D004762 ORTHO05D005972 3.7e-16 90.5 68 63.2
SEGI_02041 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 9.0e-15 85.9 96 47.9
EL10Ac3g06411 Beta vulgaris HOM05D004762 ORTHO05D005972 8.4e-13 79.3 44 81.8
Nitab4.5_0004804g0050 Nicotiana tabacum HOM05D004762 ORTHO05D005972 4.6e-11 73.6 60 58.3
Lsat_1_v5_gn_3_79340 Lactuca sativa HOM05D004762 ORTHO05D231769 1.8e-10 71.6 67 59.7
Gohir.D05G318650 Gossypium hirsutum HOM05D004762 ORTHO05D005972 2.1e-08 64.7 47 68.1
Gohir.D07G108366 Gossypium hirsutum HOM05D004762 ORTHO05D046822 2.1e-08 64.7 43 74.4
Gorai.012G079400 Gossypium raimondii HOM05D004762 ORTHO05D046822 2.1e-08 64.7 47 68.1
MD13G1267900 Malus domestica HOM05D004762 ORTHO05D005972 3.7e-08 63.9 41 73.2
GSVIVG01022727001 Vitis vinifera HOM05D004762 ORTHO05D005972 3.7e-08 63.9 51 58.8
MD02G1220900 Malus domestica HOM05D004762 ORTHO05D005972 4.1e-07 60.5 38 71.1
BraA03t11487Z Brassica rapa HOM05D000223 ORTHO05D001193 1.5e-06 58.5 138 34.8
CDE06G2415 Ceratophyllum demersum HOM05D004141 ORTHO05D005416 4.5e-06 57.0 263 26.6
Sed0021837 Sechium edule HOM05D004762 ORTHO05D005972 4.5e-06 57.0 42 64.3


User provided reference genes

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